Trematomus bernacchii (emerald rockcod): 117490351
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Entry
117490351 CDS
T09643
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117490351 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117490351 (ddx46)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117490351 (ddx46)
Spliceosome [BR:
tben03041
]
Complex A
U2 snRNP components
U2 related factors
117490351 (ddx46)
Complex B
117490351 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
117490351
NCBI-ProteinID:
XP_033995955
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
MGRESRHYRKRSTSRGRSGSRSKSRSPDKRSKKDDRDRNRRERSRSRDRRRSRSRDRKRP
RRSRSRERRRSRSRDRRRSGSRTRARRSRSGSQSKNRRPDEKPRSKEKDNIDPLSDKKKI
KEEKEDEKIEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQGKK
WSLEDDEDDDEDMSAPMEGDDEEEGEEKGEDKEKEMIKEEKKEEGEMEQETPMEQEEEED
DVDTLDAYMEAVKQEVKKFNMGSMKGNDKKGGTMSVTKVMTVVKTKKGPNTHKKKGELME
NDQDAMEYSSEEEEVDLQTALTGFQTKTRKVLEPVDHGKIEYEPYRKNFYVEVPELARMT
PEDVHLYRLELEGITFKGKGCPKPIKTWVQCGVSMKILGSMKKQGYDKPTPIQAQAIPAI
MTGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPIAVIMTPTRELALQIAKECK
KFSKQLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRSTYV
VLDEADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRAMEALARRILIKPLEVQVGGR
SVVCSDVEQHVLVIEEDKKFLKLLEILGHYQEKGSVIIFVDKQEHADSLLKDLMKASYPC
MSLHGGIDQYDRDSVINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHR
AGRTGRAGNKGFAYTFITDDQVRYAGDIIKALELSGSPVPPELEQLWSSFRDQQKAEGKT
IKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKKR
VKDLSAPGATSGSAGSTSSTSSVSGGLPGLGPTSAGNIQKLEMAKRLALKINAQKNLGAE
AQDVMQQATNAILRGGTIMTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAET
VKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYL
AIESANEMAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtcgagacactacaggaagcgctctacgtctcggggccggtcaggcagc
cgatcaaagagtcgctccccggacaaacgctccaagaaggacgaccgggaccggaacagg
agggagaggtcccgcagccgagaccgccggaggtcccggtccagagacagaaaacgaccc
aggcgctccaggagcagagagaggaggaggtccagaagcagagacaggaggaggtcgggc
agcaggacccgggctcggaggtcccgatctggaagccaaagcaagaataggaggcctgat
gaaaagccaaggagcaaggagaaagacaacattgatcctttatctgacaagaaaaagata
aaagaggagaaagaggatgagaagattgaggatcaagactttgaccagaacaagcttgag
gaggagatgaggaagaggaaggagcgtgtggagaagtggagggaagagcagaggaagaag
gccatagaaaacatcggggagatcaagaaagaactggaggagatgaagcagggcaagaag
tggagcttggaggatgacgaagatgatgacgaggatatgtcggctccaatggagggggac
gatgaggaagaaggggaagagaagggggaggataaagagaaggagatgataaaggaggaa
aagaaagaggagggtgagatggagcaggagacccctatggagcaggaggaggaggaggac
gacgtggacactctggacgcctacatggaggcggtgaaacaggaagtgaagaagttcaac
atgggatccatgaaaggaaatgataagaaaggaggaacaatgtcagtaaccaaagtgatg
acggttgttaaaaccaagaagggacccaacactcacaagaagaagggtgagctgatggag
aatgaccaggatgctatggaatactcgtcagaggaggaggaggtggatctgcagacggct
ctgacgggcttccagaccaaaacgaggaaggttctagagcctgtcgatcacgggaagatt
gagtacgagccataccgcaaaaacttctatgtggaggttcctgagctcgccaggatgact
ccagaagacgtgcacttgtacaggttggaactggaaggcattacatttaaagggaagggc
tgtcccaaacctatcaagacctgggtgcagtgtggagtgtcaatgaagatcctcggttct
atgaagaaacagggctacgataagcccactcccatccaggcccaggccatccctgccatc
atgacgggccgtgacctcattggcatcgctaagaccggcagcgggaaaaccatcgccttc
ctgctgcccatgttccgacacatcatggaccagaggcccctggaggagtctgagggacca
atagctgtcatcatgactccgaccagagagttggctcttcagatcgccaaggagtgtaag
aagttctccaaacagctgggactccgggtggtgtgtgtttatggaggaacaggcatcagt
gaacagattgctgagctgaagagaggagcggagatcatcgtgtgcacaccgggaagaatg
attgacatgttgggggccaacagcggtcgagtgaccaacctgcgcagatctacatatgtg
gtgttggatgaagcagacaggatgtttgacatgggctttgagccacaggtgatgcgtatt
atagacaacgtgcgtccagaccgtcagacggtcatgttctccgccaccttccccagagct
atggaggcgctggcccgtaggatcctgatcaaacctctggaggtccaggtggggggccgc
agtgtggtctgctctgatgtggaacaacacgtgctggtgattgaggaggacaagaagttc
ctgaagcttcttgagattctgggtcactaccaggagaagggctcggtcatcatctttgtt
gacaaacaggagcatgcagactctctgctgaaagacctgatgaaagcctcgtacccctgc
atgtcactgcacggaggaattgaccagtacgacagagacagcgtcatcaacgactttaag
aacggagcatgtcgtctgatggtggccacctctgtggctgcgcgaggcctggacgtcaag
cagctaatcctggtggtcaactacaactgtcccaaccactacgaggactacgtccacagg
gccggacgcacaggccgcgcaggcaacaagggcttcgcctacaccttcatcacagacgac
caggttcgctatgcgggggatatcatcaaagccttggagctgtccggctctcctgtcccg
cctgaactggagcagctttggtcctccttcagagaccaacagaaagcggaaggtaagacc
attaagagcagcagcggcttctcagggaaaggcttcaagtttgatgaaacagaacacgcc
ttagctaatgagagaaagaagctgcagaaagctgctctcggactgcaggactctgatgac
gaggatggagccctggatattgaagagcagatcgagagcatgttcaactccaagaagcgg
gtgaaggacctgtcggctcccggggcgacctccggctctgcaggatcaacgtcctccaca
tcgtccgtctccggggggctgccaggcctcgggccgacgtctgctggaaacatccagaaa
ctggagatggccaagaggctggcgctgaagatcaacgctcagaagaacctgggcgccgag
gctcaggacgtgatgcagcaggccaccaacgccatcctgcgggggggcaccatcatgacg
ccctcggtgtcggcaaagaccatcgcagagcagctggcggagaagatcaatgccaagctg
aactacacccccgtggagaagctggaggaggagcggcaggcggctgaacaggccgagacc
gtcaagagatacgaagaggagctggagatcaatgacttccctcagacggccaggtggaag
gtgacgtctaaggaagctctgcagaggatcggtgaatactctgaggccgccatcaccatc
agaggaacatatttccctccaggcaaagagcccaaggagggagaacgcaagatctacctg
gctattgaaagtgcaaatgaaatggccgtgcagaaagccaaaacagagatcacacggttg
atcaaggaggagctcatcagattacaaaattcttaccagccgacgagcaaaggccgctac
aaagtgttgtag
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integrated database retrieval system
