Trematomus bernacchii (emerald rockcod): 117490376
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Entry
117490376 CDS
T09643
Name
(RefSeq) rab11 family-interacting protein 1 isoform X1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117490376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117490376
Membrane trafficking [BR:
tben04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
117490376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2
RBD-FIP
End3
Motif
Other DBs
NCBI-GeneID:
117490376
NCBI-ProteinID:
XP_033995988
LinkDB
All DBs
Position
Unknown
AA seq
1420 aa
AA seq
DB search
MMSLIDLDDDQRWVPTHVNVTVLRARGLRTKGKHGSRYLYTIIQVGKEKYTTGLVEKAEL
PEWNEECCFELLPGILEAGGRGDYPPGSGDLLLTVMHRVLIGLDVFLGQAVIPLDRIFQE
GMCPRDEWFKLNSKAGRKEKDRGGLQATVQFTRNNMTASMFDLTIKDKPRSAFGKLKDRV
TGRKRGDMESSSAIVPGRFAALSGSLGQPFEEGGGGPAETRDVERAEEKRSKVKDFFKGK
LRKSSDTRSCSSLASESSVSSMASDNPGPPPSLDLMSDPPSSPIYTSRVRADTHYGETAL
AKKVLASQHTTNVFTHKRAFSDEASKITTAFPRPNLAVESLKGQTMTQSKSSLCINGSHV
YDSEPSTPKSLGAHQSRLVLLEKCSPLSRSLQNLTKRSEDKGNFTGGRRWSFDKTKKEEK
EDDKEAQASSPSNQQAQAEMPATSSASVSPDKGRKLRKTLFSGGRSDSLPAKSDMNQAGS
TSEGRLRGWFGSGESQNKPRLEVSPKVESSSDVPPPLPPRSPVPPQCSSPSAPPSGHASP
DDCNHTNPFSPASPPISSSNPFPSQRNPFFEDLIAEESQRSPTFAPCTSSNSSPFHYTTL
PCTPSPDRDVKATNMAHMKRERPRPVARQISLPAIIPKAAKTKPSAPRSMSECTGEWDDS
FDAFASSRLYSPQGSLPQKQRTSQPSPSDLPGNNNTNTQAHELQTCEEEPPPLPPRRPVR
TSVNEIYSDGWLHRGQELAVHKEAYLLSQTGVASLQRGREAESKRNSISPDPHTSSETSD
SLSANSHTYANITPPGFTTDEKLKRFKYEPLEDENHRWGGMLFEQDLYGRMCRGNYGQPQ
VNRLSLNAEEIAGNNVTSVNSGPKILDSEVSVADLLNISCSSSKPDAKALEITTTRVAEP
ESNPPESTCINNNVSLSPTLEDLNMNVNNSDFGFIDSDSSSHSEVVDPLKGIRSFGGTFP
QPPEASQIAAYHVETVTTPEELFTLKDTYIRERNSSFEIPASSSKLLKVSPVYQDNCHDQ
LNNSRVSSREITARNADDIKTESRGVTARSVADLKTTQKEIDDNGNPQAKTAALNQHDAF
PGVVSARLRPKGLSRQNSNGSPSNQSLNGDREFEQFLSLVQNISEVREGPSSYLPSKSAL
SSLLSLVDSTTNQNESNETSQISSQDNTIVKSSDISFEDLHAKVAPNSRTPTKSKIGESL
LEPSFSSIPRTLSLSGDVQAKPHPTLVCCPSIHPSSMGPGAGASSTLAVAPYTSTFSTTC
TTDQPLVDARHSLFPEETQPASSLPRQESRTHPVKPLTSSQSEKKEGRSVLEKLKSTINP
GRTAHQAAAEPERSQEVRVDNTAHYQQLTNMELISLLLQQEMDMQKQDAASEQQAAKLHK
CEADLKKVKLQVRDLEDYIDNLLLRIMEQTPTLLQVKRHK
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcactgatagatctggacgatgatcagagatgggtgcccacccatgtgaatgtc
accgtgctccgggccagaggactgcgaaccaagggcaagcatggcagccgctacctctac
accatcatccaggtgggcaaagagaagtacacgaccgggctggtggagaaggcggagttg
cccgagtggaacgaggagtgctgcttcgagctgctgcccgggatcctggaggccggcggc
cggggagactaccccccggggagcggggacctgctgctgaccgtcatgcaccgggtgctc
atcggactggacgtgttcctcggacaagccgtcattcctcttgataggatatttcaggag
gggatgtgtcctcgagatgaatggttcaagctcaactccaaggcgggcagaaaggagaag
gaccgaggcgggctgcaggccacggtccagttcactcgcaacaacatgaccgccagcatg
ttcgacctcaccataaaggacaagcctcgctctgcttttggaaagctcaaggatcgagtc
acggggaggaagaggggggacatggagtcttcctcagctattgtgcccggacgcttcgca
gccctgtcaggatccctggggcagccgtttgaggaggggggcggagggccggctgagact
cgagatgtggagagagcagaggagaagaggagcaaggtgaaggacttcttcaaagggaag
ctgcgaaagtcgtctgacaccaggtcgtgttcctccctggcttcagagagcagtgtgtct
tccatggccagtgataaccccggccccccacccagcctggatctgatgtcagaccctccc
agctctcccatctacaccagcagagtgagagcggacacccattacggagagacagcttta
gctaaaaaggtgctcgccagccagcacaccacaaatgttttcactcacaagcgggccttc
agcgatgaagccagtaagatcacgacagccttccctcgcccaaaccttgcagtggagtct
ctgaagggtcagaccatgactcagtccaagtcttccttgtgtataaacggcagccacgtc
tacgactcggagccatcgactccgaagagcctcggagcccaccagtccaggctggtgctg
ctggagaaatgctccccgctgtctcgctccctgcagaacctcaccaagagaagcgaggac
aaagggaacttcaccgggggccgacgctggtcctttgacaagacgaagaaagaggaaaag
gaggacgataaggaagctcaggcgtcgtctccatcgaatcagcaagctcaggcagagatg
cccgccacctcctctgcctcggtttctcccgacaaagggaggaagctaagaaagacgcta
ttctctggagggaggagtgattctctcccagctaagtctgatatgaaccaggctggttcg
acatctgaggggaggctcagaggctggtttggctccggtgaatcccagaacaagccaagg
ctggaagtttctcctaaggtagaaagcagctcagacgtaccccctccccttcctcctcgc
tcccctgtaccccctcagtgctcctctccctccgcccccccctccggtcatgcctcacct
gatgactgcaatcacaccaatcccttctcccccgcctcaccccccatctcctcctctaac
cctttcccctcacagcgcaacccttttttcgaggatctcatagccgaggagtcacagagg
tctcctacttttgcaccttgcacctcatccaactcctccccctttcattacaccaccctg
ccctgcacacccagccctgatcgggatgttaaagctacaaatatggctcacatgaaacgg
gagcgccccaggccagttgctaggcagatatctctccctgcaataatacccaaagcagcc
aaaacaaaaccctccgcccctcgctccatgtctgagtgtacaggagaatgggacgactct
ttcgatgcctttgcctccagcaggctctactcacctcaagggagtcttcctcagaaacag
agaaccagtcaaccatctcccagtgatcttccaggtaataacaacaccaacacccaagca
cacgagctgcaaacatgtgaagaggagcctccacctttgcctccaaggagacctgtaaga
acttcagtgaatgagatttactctgatggctggttgcacagaggacaagaactagctgtc
cataaagaagcctatctgctgtctcagaccggcgtggcctcgctgcagcggggaagagaa
gcagaaagcaagaggaacagtatctctccggaccctcacaccagcagcgagacctcagac
tcgctcagcgctaactctcacacgtacgcaaatatcactccaccaggattcacgacagat
gaaaagctcaaaaggttcaaatatgaacctttggaagatgaaaaccaccgctggggaggg
atgttgttcgagcaagacttgtatggacgcatgtgcagaggaaactacggacaaccccaa
gtgaatcgtttatcgttgaatgctgaagagattgccggaaataatgtgacatccgtgaac
tcaggacctaaaatacttgatagtgaggtatctgtagcagaccttttaaacatatcatgt
tcttcctcaaaaccagatgcaaaagcactagagattacaaccactcgagtagcagagcca
gagtctaatccacctgaaagcacatgcatcaacaataatgtgtctttgtctccaaccttg
gaagatctgaacatgaatgtgaataattctgattttggctttatcgattcagatagctct
tcgcattcagaggtagttgacccactcaaaggcattaggagttttggcgggacttttcca
caaccgccagaagcttcacagatagctgcctaccatgtggagacagtcaccacacctgag
gaactgttcactttgaaggacacctacatacgggagagaaactcttcctttgaaatacct
gcatcatccagcaaactgctcaaagtctctccagtttaccaagacaattgccatgatcag
ctgaataactccagggtaagcagcagagaaatcactgctagaaatgcagacgatattaaa
actgagtccagaggtgttactgcaagaagtgttgcagatttgaaaacgacacaaaaggag
attgatgataacggaaacccacaagctaaaacagccgcacttaaccaacatgatgcattt
cctggtgtggttagtgcacgtttgagaccaaaaggactgtctcgacaaaacagcaacggc
agcccgagcaaccagagcctaaacggagacagagagttcgaacagttcttgtccctcgtt
caaaacatttccgaagtcagagaaggaccgtcgtcatatctgccctctaaatcagctctt
tcttcgttactgtcattagtagatagcactacaaatcaaaatgagtccaatgaaacatca
cagatatcttcacaagacaacacaatagtaaaatcctctgatatcagctttgaagacctt
catgctaaagtagcaccaaactcaagaacccctactaagtcaaagattggggaatctttg
ctcgaaccctctttctcctccatcccgcgcacactctccctttcaggtgacgtacaggct
aagccccaccctacccttgtttgttgcccctccatacatccctcaagcatggggcccggt
gctggagccagcagtactctggcagtggccccctacacctccaccttctccaccacctgc
accactgaccagcccctggtcgatgcacgccactcactttttcctgaggagactcagcct
gctagcagcctgccccgtcaggagagcagaactcatccagtgaaaccgttaacttccagc
caatcagagaagaaggagggtcggtcggtcctggagaagctgaagtctaccatcaacccc
ggacgcaccgcccaccaggctgctgccgaacctgagaggagtcaggaggtgagagtggac
aacacggcccactaccagcagctgaccaacatggagctgatctccctgctgctgcagcag
gagatggacatgcagaagcaggacgcggcctccgagcagcaggcggcaaagctgcacaag
tgtgaggctgatctgaaaaaggtcaagctacaggttcgagacctggaggactacattgat
aatcttttactgcgcatcatggagcagacccccacgctgcttcaagtcaaaagacacaag
tga
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