Trematomus bernacchii (emerald rockcod): 117490489 Help Entry 117490489         CDS       T09643                                  Symbol rad50 Name (RefSeq) DNA repair protein RAD50   KO K10866   DNA repair protein RAD50 [EC:3.6.-.-] Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben03440   Homologous recombination tben03450   Non-homologous end-joining tben04218   Cellular senescence Brite KEGG Orthology (KO) [BR:tben00001]  09120 Genetic Information Processing   09124 Replication and repair    03440 Homologous recombination     117490489 (rad50)    03450 Non-homologous end-joining     117490489 (rad50)  09140 Cellular Processes   09143 Cell growth and death    04218 Cellular senescence     117490489 (rad50)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:tben03032]     117490489 (rad50)    03400 DNA repair and recombination proteins [BR:tben03400]     117490489 (rad50) DNA replication proteins [BR:tben03032]  Eukaryotic type   DNA Replication Termination Factors    MRN complex     117490489 (rad50) DNA repair and recombination proteins [BR:tben03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     MRN(MRX) complex      117490489 (rad50)     BRCA1-C complex      117490489 (rad50)    NHEJ (non-homologous end-joining)     MRX complex      117490489 (rad50) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  AAA_23 Rad50_zn_hook AAA_21 AAA_15 SbcC_Walker_B SMC_N ABC_tran AAA_29 zf-met AAA_16 AAA_22 AAA_13 Motif Other DBs NCBI-GeneID:  117490489 NCBI-ProteinID:  XP_033996139 LinkDB All DBs Position Unknown AA seq 1312 aa AA seqDB search MSKIDKMSILGVRSFGIEDKDKQVITFFTPLTVLVGPNGAGKTTIIECLKYATAGELPPG SKGGAFVHDPKDAHETDVRAQIRLLFSDVNGEKVTIHRSMSCTQKAKNYSFKSLEQVITR IKDGEKVSLSSKCGELDREMISSLGVSKAVLNNVIFCHQEESNWPLCEGKALKDKFDSIF AATKYIKALETMRQLRLKQSHTVKECQVELRYLKQNKEKSQQIKETVDTKEAQLMASKDN IQQVESQIDPLENRLTDIDTKLGKVMKLDNDIKALDSRKKQMEEDNKELEETMEQVFQGS DEQLQETYQNHQRTVREKERRLTDCQKELERAGRECQRLNRVKADLLVEQGRLQLEADRH TQNIKNRDTQVRSLSSSLEMEGYDRPPFSSLQLESFNRQVTQRLDQEKETANQVMADLQE KDQQKQQSIDEMRDKKTGLERTVELKRDMQGKKQQEMRNVRTELLKLEGSSGRLQELENE LAKVERELQSAVQSSNVEELKAEVLELQREKAELDRLQRQLDQEMGLLNTHTTARTQMDM LKKDKTEKDEQVRKIKSRHNEELVSLLGHFPNKRELEDWIYSKSKEINSTRDRLAKFNKD LASNEQNKSHIAAEVRKKEQQLASDEEKFFNVCGSQDLEQDLGKLREDLEKISKQRAMLS GATAVYTQFISQLTEEREPCCPVCQRTFPSDSDLQEVISDMQSKLRLVPDKLKNTETDLK RKERKREEMMALRPVRQSIVQFQEKELPELRNRLQTVNREIERLKGDVEEQETLLGVLMS EEETAKACLQDISLMDRYLMDLKELERKIAQQAAKLQGVDLTRTIQQVSQEKQETQHKLD TTSSKMELKRKLIQDQQDQIQMLRSSANETRAEKLQLSSDMQKQQQLEEQCVECTTEIQT LTRDIREAKEQLSPLSASLEKLQQEKQELVERRRQRQEEGQEKINAIKEKVKSIGNLEKD IKKYVEDGKNEYKEQKESELQETNTQLHEAEKNKDKINKEMGNIRQDIDTQKVQERWLQD NLTLRKRVEELKEVVARREVLLKDMGNMQVLQLRQERRDADRKLEELKKNRSIAMGRQKG FEEEILHYRKELREDQYNKADERYKNKMITMRTTELVIKDLDLYYKALDQTIMKFHSMKM DEINKIIRDLWRNTYRGQDIEYVEIRSDVDENSSAGVRRRVYNYRVVMVKGDTALDMRGR CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRDNIESLAHALVEIIKSRSRQR NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITSLSTHLN NT seq 3939 nt NT seq  +upstreamnt  +downstreamnt atgtcaaagatagacaagatgagcatcttaggggtgaggagttttgggatagaggataaa gacaaacaagtcattactttcttcactccactgactgtgctagttggacccaatggagca gggaaaacgactattattgagtgccttaagtatgcaacagcaggagagcttccgcctgga tctaaaggaggggcatttgttcatgatccaaaggacgcccatgaaacagacgtgcgagca cagatccgactgttattctcagacgtcaacggagagaaagtgactatccatcgctccatg tcctgcactcagaaggcgaagaactactccttcaaaagcttggagcaagtcattacccga ataaaagacggtgagaaggtgagcttgtcatcaaagtgtggcgaactggatcgggagatg atttcttcactgggagtgtcgaaggctgtgctgaataatgtcatcttttgtcaccaagaa gagtccaactggccactttgtgagggcaaagcactcaaagacaagtttgactccatcttc gctgcaaccaagtacatcaaagctctggaaacgatgcgtcagttgcgtctcaaacagagt cacacagtgaaggagtgtcaggtggagctgcgctacctgaagcagaacaaggagaaatcc cagcagattaaagagaccgtggataccaaagaggctcagctgatggcctctaaagacaac atccagcaagtagagagccagattgatccactggagaatcgactgacggatattgacacg aaactggggaaagtgatgaagctggacaacgacatcaaggctttagacagcaggaagaaa cagatggaggaggacaacaaggagctggaggaaactatggaacaggttttccagggttca gatgagcagctgcaggagacttaccagaaccaccagaggacggtgagggagaaggagcgc aggctgacagattgccagaaggagctggagagagctggtcgagagtgtcagagactcaac agggtcaaggccgacctcctagtagaacaaggtcgtctccaactagaggctgaccgccac actcaaaacatcaagaaccgagacactcaggttcgctctttgtcgtcctctctggagatg gagggttacgacagacctcccttcagcagtcttcaacttgaaagctttaatcgtcaagtc acacagagactggatcaggagaaagagacggccaatcaggttatggctgacctgcaggaa aaggatcagcagaagcagcagtccattgacgaaatgagagataagaagaccggcctggag agaacggtggagttgaagagagacatgcagggaaagaagcaacaagaaatgaggaacgtc cggacagagctgctgaagctcgagggttcgtccggccggctgcaagaactggagaatgaa ctggctaaagtggagcgcgagctgcagagcgcggttcagagctccaacgtggaggagctg aaggccgaggtgctggagctccagagagagaaggctgaactcgaccgcttacagagacaa ctcgaccaagagatggggttgctcaacacacacaccaccgctcgcacacagatggacatg ctaaaaaaggacaagacagagaaggacgagcaggttcgtaagatcaagtctcgtcacaac gaggaactggtgtcgttgctcggccactttcccaacaagagagagctggaggactggatc tattccaagtcgaaggaaatcaacagcaccagggaccgacttgccaaattcaataaggac ctggcttcaaatgagcagaacaaaagccacatcgctgctgaggtacggaagaaggagcag cagttggccagcgacgaagagaagtttttcaatgtgtgtggcagtcaagatctggagcag gacctgggcaaactgcgagaagatctggaaaagatctccaaacaaagagccatgctatcc ggagcaacagcggtgtacacccagttcatcagccagctgacggaggagagagagccctgc tgccccgtgtgccagcggacgttcccttcagactctgatctgcaggaagtcatcagcgac atgcagtccaagctgcgcctggtgccagacaagctgaagaacacggagacggatctgaag aggaaggagaggaagagggaggagatgatggctctcagacctgtcaggcagtccattgtg cagtttcaggaaaaggagctgcctgagttgagaaaccgcctgcagactgtgaatagagaa atcgagcggctgaagggggacgtggaggagcaggagactctgctgggtgtcctcatgtca gaggaggaaaccgccaaggcctgcctgcaggacatttctctgatggacagatacctgatg gaccttaaagagttggagaggaaaatcgctcagcaggcagccaaactccagggagtagac ctgaccagaaccatccagcaagtcagtcaggagaaacaagaaacccagcacaagctagac acaacttccagcaagatggagctgaaacgcaagctgatccaggaccagcaggatcagatt cagatgctgagaagttcggcgaacgagacgagggcagagaagctccagctgagcagtgac atgcagaaacagcagcagctggaggagcagtgtgtcgagtgcaccacggaaatacagacc ctcacccgggacatcagggaagcgaaggagcagctgtcccctctgtctgcgtctctggag aagctgcagcaggagaagcaggagctggtggagcgcaggaggcagaggcaggaggagggg caggagaagatcaatgccattaaagaaaaggtgaagtcaatcggcaacttggaaaaagac atcaagaaatatgtcgaagacggcaaaaacgaatacaaagagcaaaaagagtctgagctt caagaaaccaacactcagctccacgaggctgagaagaataaagacaagatcaacaaggag atgggaaacatccgccaggacattgacactcaaaaggtccaggagcgctggttgcaggac aacctgacgttgaggaaacgtgtcgaggagttaaaggaggttgtggctagacgtgaggtt cttctgaaagacatgggcaacatgcaagtcctgcagctacgccaagaacgacgtgatgcc gaccgcaagttggaagagttgaagaagaaccgcagtattgcaatgggtcgtcaaaaaggc ttcgaggaggagatactgcattacaggaaggagctgcgagaagatcagtataacaaagct gacgagcgctacaagaacaagatgatcacaatgaggacaaccgagctggtcattaaagat ctggatctctactacaaggccctggatcaaaccatcatgaaattccacagcatgaagatg gatgagatcaacaagatcatcagagacctttggcgcaacacctacaggggtcaagacatt gagtacgtggagatccgctctgatgtggacgaaaactcgtctgctggagtgcggcggagg gtttacaactacagagtggtcatggtgaaaggagacaccgctctggacatgagggggcgc tgcagtgccgggcagaaggtgttggcgtccctgatcatccgtctcgctctggcagagacc ttctgtctgaactgtgggatcctggccctggacgagcccaccaccaacctggaccgagac aacatcgagtctctggcacacgccctcgtagagatcattaagagtcgctctcgccagcgt aacttccagctgctcatcatcacccacgacgaggactttgtggagctgctgggccgctcc agctacatcgagcacttctaccgcatccgtaagaaccaggaccagaactctgagatcaca aagtgcagcatcacctccctctctacccatctcaactga

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