Trematomus bernacchii (emerald rockcod): 117491048
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Entry
117491048 CDS
T09643
Symbol
atg4b
Name
(RefSeq) cysteine protease ATG4B isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04136
Autophagy - other
tben04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117491048 (atg4b)
04136 Autophagy - other
117491048 (atg4b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tben01002
]
117491048 (atg4b)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117491048 (atg4b)
03029 Mitochondrial biogenesis [BR:
tben03029
]
117491048 (atg4b)
Peptidases and inhibitors [BR:
tben01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
117491048 (atg4b)
Membrane trafficking [BR:
tben04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
117491048 (atg4b)
Mitochondrial biogenesis [BR:
tben03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
117491048 (atg4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Dysbindin
Motif
Other DBs
NCBI-GeneID:
117491048
NCBI-ProteinID:
XP_033996770
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MDAATLTYDTLRFGEFEDFPETSEPVWILGKEYNALTEKDDILSDVTSRLWFTYRKNFPP
IGGTGPTSDTGWGCMLRCGQMILGEALVCRHLGRDWRWARGQRQREEYISILNAFIDKKD
SYYSIHQIAQMGVGEGKPIGQWYGPNTVAQVLKKLAVFDTWSRLVVHVAMDNTVVIEEIK
RLCMPWLDVEGACCEPEGAGELNGCPGGACAMAEEETALWKPLVLLIPLRLGLSDINEAY
IGTLKQCFMLPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPAVEPCEDGQVPDETY
HCQHPPCRMHICELDPSIAAGFFCRTEDEFDDWCMRIRRLSCNRGGLPMFELVDSQPSHM
VSVDALNLTPDVPFADFSDSDRLERFFDSEDEEFEILSL
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggatgcagcaaccttgacatacgacacacttcgctttggagagtttgaagattttccc
gagacctcagagcctgtgtggatcttggggaaagaatacaacgcactgacagagaaagat
gacattttatcagatgtcacctcccgactgtggttcacatacagaaaaaacttcccgcca
attggggggacaggaccaacatctgatacgggatggggctgcatgttgcggtgcggacag
atgatcctcggggaggccttggtgtgtagacatctaggcagagactggagatgggccaga
ggccagagacaaagagaagagtacatcagtattctcaacgccttcattgacaaaaaagac
agctattattccatccatcaaattgcccagatgggagttggagagggaaagcccataggc
cagtggtatggacccaacacagtggcccaggttctaaagaagctggcagtgtttgatacg
tggagcagattagtggtacacgtggcgatggacaacactgtggtcatcgaagagatcaag
cgtctgtgtatgccctggctggatgttgaaggagcctgttgtgaaccagagggagcaggg
gagctgaacggctgcccggggggggcctgtgctatggctgaggaggagacggctctctgg
aaacctctggtgctgctcatccccctcaggctgggcctgagcgacataaatgaggcgtac
atcggaaccctcaagcaatgcttcatgctgcctcagtccctgggggttattgggggaaaa
cccaacagtgcccattacttcattggttatgtcggagaggagctcatctatctagacccc
cacaccacgcagcctgcagtggaaccctgtgaagacggacaggtccctgatgagacgtac
cattgtcagcaccccccctgccgcatgcacatctgtgagctggacccgtccatcgcagcg
ggtttcttctgcagaacagaggacgagtttgatgactggtgtatgcgcataagaaggctg
tcctgcaacagggggggcctgcccatgtttgagctggtagacagtcagccctcccacatg
gtcagcgtggatgccctcaaccttactcctgacgttccctttgcagatttctcagactcc
gacaggttggagcggttctttgactcggaggacgaggagtttgagatcctttccctctga
DBGET
integrated database retrieval system
