Trematomus bernacchii (emerald rockcod): 117491148
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Entry
117491148 CDS
T09643
Symbol
frem1b
Name
(RefSeq) LOW QUALITY PROTEIN: FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117491148 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
tben04091
]
117491148 (frem1b)
Lectins [BR:
tben04091
]
C-Type lectins
Lecticans
117491148 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Motif
Other DBs
NCBI-GeneID:
117491148
NCBI-ProteinID:
XP_033996903
LinkDB
All DBs
Position
Unknown
AA seq
2152 aa
AA seq
DB search
MAAAVRTLLLLVVTAICSGTLVVVNSGVKVTRGRSVFITEMELRINVGPTADCKVEVVMN
EPITQRVGKLTPQVFDCSFQEDEVKYCHNGSPLLDQDTVMLRIYRFTSSDTLVETVFLTV
QVADSRSGVVELGGTPLVVPVFYGLSNSIDGSVLNIRSSADLVCTVRLMSDTSTPALGQL
VRKEDSTQRKGRETASLCQGNQPCLHDTKEVGFLKTSCQDFLSSDLKYQHLSPPSPEIDY
IPIRVELREKGSRALLEAESVWLPVLIHGAMQNQPPQAVFMASFILEVDQFILTPLTTAS
LDAKDPETPQERLVFNITTPPAEGYVTHLDDHTKPVTSFTWLDLHEMKVAYQPPNSSQSQ
RRNHEVEFHVIDGSYITSPPFMVHISIRVAETNAPRVSWNMGLDLLEGQSRPVTWDELQI
VDNDNINAVYLVAVDGPLHGHLSVRGRKAFMFRVGDLREGVVVYHHSDSDTTHDHIVFRI
SDGRHSIRHKFPINILPKDDSPPFLINNVAVELQEGGAVRLEQFMLLASDLDSSDDYILY
QVTSSPRAGQLLRKTSTQETGDPVESFLQRGLIQGQIYYQHSGEEQFEDSFDFTLSDSHQ
PPYLSQTYTVVVHVFPVKDQLPVEVSGSMRSLTVRETEVVHVTQAHLHFTDREHPDTDLS
YVITQPCINPLHPGLMDAGRLFYTDTTNSMKKDHMVPVLKSFTQHAVNHRKVAFMPPVED
IGPDPLFLQFVFSVSDHHGGTISDLVFNITVIPVDDQAPEAFTNLLRVEEGGGAFVTEEH
LLVQDRDSWEEVLRAEVQRTAGHGRLELQGRTLLQGHTFTLQDLRERRLRYIHDDSETTE
DEVHLKVTDGLNSADVVLAIQVLQMNDEPPQLGGGLRGELSCQERGRVQVTVDYLSATDR
DSEDSRLMYMLARRPGRGELQRDGLSVDKFSQQDLLQGHVYYVHTGGEIGPDPVVDIVTL
IISDGEAGGTDGCCYGDAPPPPVPLHGTLPVYDLNITILPVNNEVPSITLGASMLMVDEG
SSSCLCGGVLAASDPDSPPDQLTFHLETPPLHGYLENTLPTSGSEKSNVGVRVESFSLVH
LTMGLINYVQSESKGAEPTIDQMSISVSDGLHRSAPVPFYIIISPTNDETPSLLLANFTV
NEGGMRELTPSILNGFDLDSPLDTLTFTVVQPPAHGSLINGIYGSEKSRYTDKGAELLQR
SLPITSFTLQELQQGMKIVYMHDDTETLQDAVALQLTDGVHTVQGRARVTVLPLNDERPR
LLRNAGLEVDPGERRVISSVALEAEDPDNPPQQLFYSLIAAPRFGKLQIKKESAWSELSA
GQNFTQDDVEMNRLWYAHTAATNAAGFKGHDSFRFTLSDLDNETPAQSFFINVHTVQKGE
LLLLIRGGHLTEGQRLVLNTNILLAWDSSGHPEELVYTLSAPPRQGLVHGVQQPGVPLAS
FTQLDIAAHRVCYTHDNSHHADTDSFSFVVTNGASSRSGTLHFTIEHGDRIPPTLNHNTG
LRLQDGSTETISPAQMQLTDPDTATSNLSFVITQPPGHGRLLLRGVPLFPPLGFTQTDVD
QLNLAYQHQLGSLVDIDRFYFLPTDGTNIGYLEFGQLREEPAVFNIQVDRVDRLPPSLST
RRIPSTVVGLGGGRYGIFITSKHLQASDPDSPAEELEFSISRPPQFGYLENALTGAYIKG
RFTQRDVDQRAVAFVLPADMEVTADSFQFLLTDPAGNTMLPQILELSWSRVELSATCYRT
CETVGTLQIHIHRSGGSADPAYVAIQVEEGSAKPGRDFTHSTAALIQFDPGVSVKTWNIY
PIDDGLEENHETFTVTLKNAKNAVLGQRTSASVEIIDPRGGRCNPDDLMVEEEDERLPTA
PPPAQLPDPTRVKEEDSVTDIEAELLWENQPHPPQGDVPNRRPYLDYREGESKDQVAPHS
HRSSPSTGSSGSSVPRVMHGGLKAGPFGPFDPSADVQVQLSGGRRSEEKVWTFHSLTPLR
LEELKPGDAGRNWSPDSPPLQDPPQMDHPEPRHNPELRQRKTGKSVSSWCAEGWTHYRRR
CYTVSSSVASWASAERSCSMLFNSSLTGVNSRRDMTWLWKFAGRKPFWIGLSGGPGRWMW
ADGQSVSFSRLSGETLLGSDCVLVENPRSWISTSCSPETQHTFICSSQARTH
NT seq
6459 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgctgtccgcacgctattgctgctggtggtgacggccatctgcagcgggact
ctggtcgtggtgaactctggcgtgaaggtcaccagaggtcgatcagtgtttatcacagag
atggagctgaggatcaatgttggtccgactgcagactgtaaggtggaggtggtgatgaac
gaaccaatcactcagagggtggggaagctgactccacaggtgtttgactgcagctttcaa
gaggacgaggtgaagtactgccacaatggaagtcctctgctggaccaggacacagtgatg
ctgagaatctacaggttcacgtcctctgacacgctggtggagaccgtgtttctgacggtg
caggtagcagactctcgatctggtgttgtggagctcggtggcactccgctggtggttcct
gtgttctacggtttatccaactccatcgatggctctgtcttaaacatccggagctctgca
gacttggtgtgcactgtcaggctgatgagcgacaccagcacccccgctctgggtcagctg
gtgaggaaggaggactccacccagaggaaaggcagagaaacagcttcactctgtcaggga
aaccaaccctgtctccatgacaccaaggaggttggttttctgaaaacaagctgtcaggac
ttcctgagctccgacctgaagtaccagcacctcagccctccgtcaccagagatcgactac
atccccatcagggtggagctgagggagaaggggagcagggctctgctggaggcagagtcg
gtgtggttaccagttctgatccacggtgccatgcagaaccagccgcctcaagccgtcttc
atggcctcattcatcctggaggtggaccaattcatcctcaccccactcaccacggcctct
ctggatgctaaagatcctgagaccccgcaggagaggctggtctttaacataaccaccccc
cccgccgagggctatgtcacccatctggatgaccatacaaagcctgtcacgtccttcacc
tggctggatctacacgagatgaaggttgcataccagccgcccaacagcagccaatcacaa
cgcaggaaccacgaggtggaattccatgtaatagacgggtcctacatcaccagcccgccg
ttcatggtccatatttccatcagggtggctgaaacaaacgcacccagagtctcctggaac
atgggtttggacctgctggagggtcagtcccgaccggtcacctgggacgagctgcagata
gtagacaacgacaacatcaatgcagtgtacctggtggctgttgacggaccgctacatgga
caccttagtgtcagaggtaggaaggcattcatgtttcgtgtcggggatctgagggagggt
gtggttgtttaccatcactccgacagtgacaccacccacgaccacatcgtcttccgcatc
agcgacggccgtcacagcatccgccacaagttccccatcaacattctgcccaaagacgac
tccccgccctttctcatcaacaacgtggcagtggagttacaggaaggtggtgccgtgagg
ctggagcagttcatgctgttggcctccgacctggactccagcgacgactacattctgtac
caggtgacctccagccctcgggcggggcagctgcttaggaagacctccacccaggagaca
ggagatccagtggagagtttcctgcagagaggtctgatccagggtcagatctactaccag
cactcaggagaggaacagttcgaggactccttcgacttcacgctgtctgacagccaccag
ccgccctacctctcccagacatatacggtggtggtccatgttttcccggtgaaggaccag
ctgccggtggaggtctccggcagcatgcgctccctgacggttagggagacggaggtggtt
catgtcactcaggctcacctccacttcaccgaccgggagcatccagacacagacctgagc
tacgtcatcacacagccctgcatcaacccgctgcatcctgggctgatggatgcgggacgt
ctgttctacacagacaccaccaacagcatgaagaaagaccacatggtgccggtgttaaag
tccttcacacagcacgcagtgaaccacaggaaggtggccttcatgcctccagtagaggac
atcggtccagatccactgtttctccagtttgtcttctccgtcagcgaccaccatggcgga
accatctccgaccttgtcttcaacatcaccgtcatccctgtagacgaccaggcgccagag
gctttcaccaacctgctgcgggtggaggagggtggaggggcctttgtgactgaggagcat
ctcctggttcaggaccgggacagttgggaggaggttctgagggccgaggttcagagaacg
gctggccatggcaggctggagctgcagggccgcacgctgctgcaaggacacaccttcacc
ctgcaggacctgagggagcgcagactcaggtacatacacgatgactctgagaccacggag
gatgaagtccatctgaaggtgacggacggcctgaactcagctgacgtcgtcctggccata
caggttctgcagatgaacgatgaacctccccagctgggtgggggtctacggggggagctg
agctgccaggagcgggggcgggtccaggtcacggtggactacttgtcggccacagatcgg
gacagcgaggactccaggctgatgtacatgctggctcggaggcctggcaggggggagctg
cagcgagacgggctgagcgtggacaagttctcccagcaggacctgctgcagggacacgtc
tactacgtccacactggaggagagattggacctgatccagtggttgacattgtcaccctc
atcatctctgacggggaggccggaggaacagatggctgttgctacggagatgcccctccc
ccaccagtgcctcttcatggtacacttcctgtgtacgaccttaacatcaccattcttcct
gtcaacaatgaagtcccatctatcactctgggtgcgtccatgttgatggtggatgagggc
tcttcttcctgtctttgtgggggggtcctggcagcctcagaccctgacagcccccccgat
cagctgacctttcacctggagactccacccctgcacggctacctggaaaacaccctgccg
acgtcaggctccgagaagagcaacgtaggagtcagagttgaatccttcagtcttgtccac
ctgaccatgggtttaatcaactacgtccaatcagaaagcaaaggggcggagccaactatc
gaccagatgtccatcagtgtaagtgatgggttgcaccgctccgcccccgtccccttttac
atcatcatcagtccaaccaatgatgaaacgccttcccttctgctcgccaacttcacggtg
aacgagggcgggatgagggagctgactccgtctattctgaacggttttgatctggactcc
cccctggacaccctgaccttcacggtggtgcagccgccggctcacgggagtctgatcaac
ggcatctacggctcggagaagagccgctacacggacaagggagcggagctgctgcagagg
agcctccccatcacctccttcaccctgcaggagctccaacaaggcatgaagatcgtgtac
atgcacgatgacacagagaccctgcaggacgcggtggctctgcagctgacagacggtgtc
cacacagtgcaggggagggccagggtcaccgtgctgccactgaacgatgagaggccacgg
ctgctgaggaacgctgggctggaggtagaccctggtgagcgcagggtgatctccagcgtg
gctctggaggcagaggacccggacaaccccccgcagcagctgttctactccctgatcgct
gcgccacgcttcggaaagctacagataaagaaggagtcggcttggagcgagctgtcggcc
ggtcagaacttcactcaggacgatgtggagatgaaccgtctgtggtatgctcacactgcc
gccacaaacgcagcagggttcaaaggtcacgacagcttccgcttcaccctcagcgacctg
gacaacgagactccggcacagagcttcttcatcaacgtgcacactgtgcagaaaggtgag
ctgctgctgctcatcagggggggacatctgacggaggggcagcggttggtcctgaacacc
aacatcctgctggcgtgggactcttcgggccatccagaggagctggtctacacgctgtcg
gcccccccccggcagggcctggtccacggtgtccagcagccgggcgtccctctggccagc
ttcactcagctggacatagccgcacatcgagtgtgctacacccacgacaacagccaccac
gcagacacagactccttcagttttgtggtcaccaacggcgcctcgtcccgcagtggaact
ctgcacttcaccattgagcacggtgaccgtatcccaccaaccctcaaccacaacacgggc
ctccggctgcaggacggctccacggagaccatctcacccgcccagatgcagctcaccgac
cccgacaccgccacctccaacttgagcttcgtaatcacgcagccgccaggccatggcaga
ctgctgctgagaggagtccctctgtttcccccactggggttcacccaaacggatgtggac
cagctgaacctggcttaccaacaccagctgggcagcctggtggacatagacaggttctac
tttctgccgaccgacgggaccaacatcgggtacctggagtttggacagctgagggaggag
ccggctgtctttaacatacaggtggatcgtgtggataggttaccgcctagtctgtccacc
aggcgaattcccagcactgtggtgggtctaggcgggggccggtatggcatcttcatcacc
tcaaaacacctgcaggcctccgaccctgacagccccgcggaagagctggagttctccatc
agcaggcctccgcagttcggctacctggaaaatgctctcacaggagcatacatcaaaggt
cgtttcacgcagcgggacgtggaccagcgcgccgtggccttcgtcctccctgccgacatg
gaggtgacggcggacagcttccagttcctcctcactgaccctgcaggaaacaccatgcta
ccccaaatactggagctgtcctggtcccgggtggagctgtcagcaacctgctacagaacc
tgcgagacggtgggaacgcttcagatccacatccaccgcagtggggggagcgccgaccca
gcatacgtcgccatccaggtggaggaaggttcggccaaaccggggagagatttcactcac
agcaccgctgctctcatccagtttgacccaggagtgagtgtgaaaacctggaacatttac
ccgatagacgacggtctggaggaaaaccacgagactttcactgtcaccctgaaaaatgca
aaaaatgctgtcctgggacagaggacgtcagctagtgtcgagatcatcgaccccagagga
ggaaggtgtaatcctgatgacctaatggtggaggaggaggatgagcgactccctaccgcc
cctcctccggctcaactccctgaccccaccagagtaaaggaggaggacagcgtcacagac
atcgaggcagagctgctgtgggagaaccagccccaccctcctcaaggagatgtccctaac
cgccggccctacctggactacagggagggggaatcaaaagatcaggtggccccccacagc
cacagatcctcccccagcactgggagctccgggagctctgtacccagggtcatgcatgga
ggattgaaggctggtccttttggtccgtttgacccttctgctgatgttcaggtccagctg
tcaggagggaggaggtctgaggagaaggtctggacgttccacagtctgactcctctccgg
ctggaggagctgaagccgggcgatgctgggaggaactggtcccctgacagtccccccctg
caggatcctcctcagatggatcatccagaacccagacacaacccagagctacgtcagcgc
aagacggggaagtcagtgagcagctggtgtgctgaaggctggactcactacaggaggcgc
tgttacaccgtcagctcgtctgtggccagctgggccagcgcagagaggagctgctcaatg
ctgttcaacagcagcctgaccggcgtgaattccagaagagatatgacctggctatggaag
tttgcagggaggaagccgttttggattggtctgtctggaggtccgggtcgctggatgtgg
gctgacggtcagtcagtctccttctccagactgagcggggagacgctgctgggctcagac
tgtgtgctggttgaaaaccccagaagctggatctccacaagctgctcccccgaaactcaa
cacacattcatctgttcctcgcaggctcgtactcactga
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integrated database retrieval system
