Trematomus bernacchii (emerald rockcod): 117491321
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Entry
117491321 CDS
T09643
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tben03009
]
117491321 (ighmbp2)
03012 Translation factors [BR:
tben03012
]
117491321 (ighmbp2)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117491321 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
117491321 (ighmbp2)
Ribosome biogenesis [BR:
tben03009
]
Eukaryotic type
Other ribosome biogenesis factors
117491321 (ighmbp2)
Translation factors [BR:
tben03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117491321 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
Viral_helicase1
nSTAND3
ResIII
AAA_16
AAA_22
UvrD-helicase
IstB_IS21
Flavi_DEAD
SLFN-g3_helicase
nSTAND_NTPase5
ABC_tran
NAT10_TcmA_helicase
PhoH
AAA_25
AAA
SRP54
AAA_31
ATPase
Zot
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
117491321
NCBI-ProteinID:
XP_033997121
LinkDB
All DBs
Position
Unknown
AA seq
992 aa
AA seq
DB search
MAVEQFVSKTLELLQEEREAEIEENRIWQENTSLKDLQSKGVCLLKLQISSQSTGLYGRT
VVIFEPRKHLGFTSLPSNSFGPGDIVGLYDTGGCTAASQIGTGIVTRVSQTAISVAFDDS
NDGLSFDTDGLHNLLKLANDVTYKRMKNALNTLNGYRNGPAANLIDVLFGDSTPSSQTQP
NEFKFFNSNLDDSQREAVSFTLSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLAQCKAKVLRLGHPARLLESIQKHSLDAILAQSDSAGIIADIRKDMDK
AFVGIKKMRERGDRVNYKREIGELRKELRTREATAIAQILKSADVVLSTNTGACHTGPLK
YLPAEHFDWVVIDECAQALESSCWIALLRARKCILAGDYKQLPPTIKSQKAASKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMDWASKEMYQGRLTAHSSVEKHLLKDLPGVACVE
ETSTPLLLIDTAGCGLSEMEVTEEQSKGNQGEVDIVELHIKALTEAGVKAKDIAVIAPYN
LQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGAVGFLSEDRRINVAVT
RARRHIAVVCDTQTVQNHAFLKSLIDHMTQHGEVRTAFEYIQDIVPQNYTRDPKDTKSSS
SSTSTKQKVKDQPPSRTKPPQKNSTGSSANENTAGKEKHTKSSLTSLTEEEQKKKNRTAE
ITAQVESFLKDSNQSELQFPSSFNSHDRLLVHQIAEEMGLVHESKGEGKDRCITVARPLE
STPAEEPPQEEEEEKEKEEEEVQNPQKEQLSQTALDLKSLHLERMKREQQKREDNAQQKK
QQNVTLPAQAQASKKPKAAKVKSKTKTGACGIAAAAAPDEDFDTLINAVIKAERVCSFLK
CKASVLMLGQLCLFCNRQYCLSHHIPEVHGCGDKAKSNARMRISKEGVLYAGSGKKDKTM
DPNKKAYLQRKLDSKLKDMSTQRKPKPKENES
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggaacagtttgtgtcaaaaacacttgagcttctacaggaggaaagggaggct
gaaatagaggagaacaggatatggcaggagaacacctctctgaaggatcttcagagtaaa
ggggtttgcctgctgaaattgcagataagcagtcagtccacaggtctgtacggtcgcaca
gttgtcatcttcgagccacggaaacatttgggttttacatctctgccaagcaacagcttt
ggacctggtgacatagtgggcttgtatgacactggtggatgcaccgcagcctcacagatt
ggcacagggatagtgacaagggtcagccaaactgcgataagtgtggcctttgatgattct
aacgatggcctcagcttcgatacagatggtcttcacaacctcttaaaattggcaaatgat
gttacctacaaacgaatgaaaaatgccttgaatacattaaatggatacagaaatggacca
gcggccaatctgatagacgttctctttggagactcaacaccttcttcacaaacacagcca
aacgagtttaaattctttaactccaacctggatgattcccagagagaagctgtgtccttt
actctgtctcagagagaattagctgtgattcatggaccaccaggcactgggaaaaccacc
actgtggtcgagatcatcctgcaagcagtcaaacaaggccaaaaggtcttgtgctgtgct
ccatccaacgtggcggtggataatttagtagagaggttagcccaatgcaaggctaaagtc
ctgaggctgggtcaccctgccagactgctggagtccatacagaaacactcactggacgcc
atcctcgctcagagtgacagtgcaggcatcattgcagacatccgtaaagacatggacaaa
gcatttgtgggaataaagaagatgcgtgaaagaggagaccgggtgaactacaaaagggaa
ataggggagctaagaaaagagctgaggaccagggaggcaacagccatcgcccagatcctc
aaaagtgctgatgttgtgttatcaaccaacacaggtgcttgtcacactggtccgctgaag
tacctgccagcggagcactttgattgggtggtgatagacgagtgcgctcaggcgctggag
agcagctgctggatcgccctgctccgagcgcgcaagtgcatcctggctggagactacaag
cagcttccaccgaccatcaaatcacaaaaggctgcatcaaaaggcctgtccctcagcctc
atggagagactcatccagatgtacggggactcggtggtccgcatgctaacagtccagtac
cgcatgaacagtgccatcatggactgggcctccaaagagatgtaccagggacgacttacc
gctcacagctctgtggagaaacacctgttaaaagatctacctggagtcgcctgtgttgaa
gagaccagcacgccgctccttcttatcgacacagcaggctgcggtctgagcgaaatggag
gtcactgaggagcagtccaaaggcaatcaaggtgaggtcgacatcgttgaactgcacata
aaggccttgactgaagctggggttaaagctaaagacatcgctgttatcgctccgtacaat
ctacaggtggatcttctgcgtcagaagctttctgcgaggcatcctgagctggagataaag
tcagtggatggatttcagggcagagagaaggaggccgtggtgttgtccttagttcggtcc
aacagaaaaggggcagttggatttctgtcagaggaccgacggattaacgtggctgtaacg
cgtgcgaggcgtcacatcgctgttgtgtgcgacacgcagaccgtccagaatcacgctttc
ctgaagtccctgatcgatcacatgactcaacatggcgaggtcagaacagcatttgagtac
atccaagacatcgtgccacaaaactacacccgtgaccccaaagacacaaagtcttccagc
agctccacgtccaccaaacagaaggtcaaagatcagcctcccagcaggacgaagccaccg
cagaagaattcaaccggaagcagcgctaatgaaaatactgcagggaaagagaagcacaca
aagtccagcttaacatccctgacagaggaagagcagaagaagaagaacagaactgctgag
atcacggcgcaggtggagagctttctgaaggactcaaatcagagtgaactacagttccca
tcatcctttaactctcatgaccgcctgctggttcaccagatcgctgaggagatgggcctc
gtgcatgagagtaaaggggaggggaaggacaggtgcatcactgtcgccagacccctggag
tcaacacccgctgaggagccaccacaggaagaagaagaagaaaaagagaaggaagaagaa
gaagtccagaatccccagaaagagcagctgtctcaaactgcattagacttaaaaagttta
catttggagcgaatgaagagggagcagcagaagagggaagataacgctcaacaaaaaaag
caacaaaacgtcaccctgccagctcaggcccaggcatcgaagaaaccaaaggctgctaaa
gtaaagagtaaaacgaagacaggcgcctgcggcatcgctgctgccgccgctccagatgaa
gacttcgacacactcatcaacgccgtcataaaggctgaacgtgtgtgcagtttcctgaag
tgcaaagcttctgtgctgatgctcggacagctttgcctgttctgcaacaggcagtactgt
ctcagtcatcatataccagaggttcacggctgcggagataaagccaagtctaatgctcgg
atgagaataagcaaggagggcgttctttacgccgggagtgggaagaaggataaaaccatg
gaccccaacaagaaagcctatctgcagaggaaactggattctaaactgaaagatatgtca
acacagaggaagccaaaaccaaaagaaaatgaaagttaa
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