Trematomus bernacchii (emerald rockcod): 117491394
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Entry
117491394 CDS
T09643
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117491394 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117491394 (edc4)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117491394 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
117491394 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
WDR55
PIN_8
Motif
Other DBs
NCBI-GeneID:
117491394
NCBI-ProteinID:
XP_033997245
LinkDB
All DBs
Position
Unknown
AA seq
1391 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSTDAPSSDGPRMPSFNGELNGLLGAAGLLGNTD
RSTMSDSTRPISTDLCSTQECQIICLSGDNGSTSLPITSNNVEIVASQDSSIHSKARGSN
KVKIQPVAKYDWEHKYYYGRLIAVSNSFVAYAIRGANNHAMIRVLSVGSAERSLLKGFTG
AVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTASKILDQVVVHIRRPEDSPLNSHRRLIW
CPFIQEDNEENQDDPSQTLALLHEDLAEVWDLEVLRATYSSWPVDAADVKDGLITVKGHT
QRVSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDQPRFVSRCLHELRPHGGRPLSCLL
FCDNHKRQDPEVPFWRFLITGADQNQELKLWCTVSWTCLQTIRFSPDMFNSSVLPSLKAS
LDLSSEFLILTDVQRKVLYVMELRQDLDKGMATFTAVSEFLLTHPVLSFGVRDVAHSRLR
HTEVLPAEEESESLTTEGIQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNLSSNFPCFL
PHSDSQDGFGFSDHLTDQSSDKESGSGSQTDLRKIPSLPAPTDFLSNSGPNSITKLMTPD
AFMTPSASVPASPGSSASSLTIVTAISSNSDSTNRAMDDVSQTPNRAENTSSSSLALSTS
SPRPASAVLLPGLESLQALASPSGPLALDGPQVLDAPLLPPLASPTRARSPDVISSASTA
MSQDMPEIASQTLQLQRVLGSSLESSPLSALQTDSMASAASALHLLTSPRTANNNSLLSL
ELGGADISVGGAVESEPRLSNTPCLLENALSQENPGAGGGSEGSISHTPWPAAPDITRET
RNSLRDNGLGDCSREEAKDRHLNSPYHRRSYHLTQNDSQDAGAEQSDPDDEVPTMAASSG
NCGRSSHRLPVKEWKTSPRGSPKVKRKTKKDDSESSQSRLMESSQMNAEVQDELLMLLRS
QQRELTELRGQITAMQSTIMVQVEHVLSNHQEQEQRRLERVLAESQNHQQQLQDQLSQQL
SHTLSSVLTNRMDKVLREEMKKTVPQTISKSLEPVTGQLNNTIAAKLTAVEITLKDNVSK
VVKSKNTTDAIGRAAAEALQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSFKQGTQE
YIQQLESHMKQRQQRELEAREPVVGQLQQMIESFQSSTDQLANNITANVRAEVQHQIQMM
VGNLQETILSHVQRIVKGEVTMAMKEQQAVVTSSIMQAMRSAAGTPVPTAHHDYQTQQAN
ILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCTLSQPVLLSLIQQLSS
NLTTRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFTFLQQDPHSPLSKRARR
LMMMLQGLVSH
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccaattctaatatagatattgagggtgcaacccagcatctccgggacattcta
aagctcgaccgtcccgggaacagcaccgatgcaccatcgagtgatggtccgagaatgccg
tcttttaatggagagctgaacggtttattgggagcagcaggccttttgggaaacactgat
cggtccaccatgtcagattctaccagaccgatctccacagacctctgcagcactcaggag
tgtcagataatctgcctttctggggataatggctccacttctctccccatcacctccaat
aacgtggagattgtggcgagtcaagattccagcatccacagcaaggctcggggcagcaac
aaggtgaagattcaacccgttgccaagtacgactgggaacacaagtattattacggcaga
ctgatcgcggtgtccaactccttcgtggcctacgccatcagaggagctaacaaccacgct
atgatccgtgtcctgagcgttggctctgcggagcgctccctcctgaagggcttcaccgga
gccgtcacagatctggctttcgctcacctcgactcgtccctgttgggctgtgtggacgag
gcgggcaacctgatggtctggcagctcacctgcacagcaagcaagatacttgatcaggtg
gtggttcatatccgacggccagaagactccccgctgaactcccaccgccgcctcatatgg
tgcccgttcatccaggaagacaacgaggagaaccaggacgaccccagccagactttagct
cttttgcacgaagacttggctgaggtgtgggacctggaggtcttgagggccacctacagc
agttggcccgtcgatgctgccgacgtgaaagatggcctcatcacagtcaagggacacaca
cagcgggtcagtgaaggggccctgtctccagatggaaccgtgttagccacagccagccat
gatggatacatcaagttctggcagatttacatagagggggggcaggaccagcccagattt
gtatccagatgtcttcatgaattgcggcctcacggaggacgccccctttcctgccttctt
ttctgcgacaaccacaaaagacaggaccccgaggttcctttctggcggttccttataact
ggagcggatcagaaccaggagttgaagctgtggtgcactgtgtcctggacctgtttacag
accatcaggttttctccagatatgtttaactcatcagttctgccaagtctgaaggcgagc
ctggacctctcctcagagtttctcatccttactgacgtccagaggaaggttctgtatgtg
atggagctgcggcaggatctggacaaaggcatggccaccttcacagctgtgtcagagttc
ctcctgacccaccctgtgctcagcttcggcgtccgagacgtcgcacacagccgactgcga
cacactgaggtcctccctgctgaggaggagagcgagagtctcacaacagagggaattcaa
ggaccaacagagtccaagtctgggatccaaattaaactttactgtgttcacaccaagagc
ctacaggatgtccagatctggtttcagcccaacttgagttccaactttccatgcttcctg
ccccattctgattcccaggatggttttgggttttcagaccatctcactgaccagagctca
gacaaggaatcaggaagtggctcccagaccgaccttcggaagatcccatcacttcctgct
ccaactgacttcctgtcaaactcggggcctaacagcattaccaagctgatgacccccgat
gccttcatgacacccagcgcttcggttccggcttctcctggcagcagcgccagcagtctg
accattgtgaccgctatcagcagcaactctgactctactaacagagctatggacgatgtg
agtcagactccgaacagagcagagaacaccagcagcagcagtctggctctctccaccagc
agcccccgacctgcttctgctgtgctgctgcccggactggagagcctgcaggcgttagcg
tctcccagcgggcccctggcactggacggccctcaggttctggatgcccccctcctgccc
cctctggcctctccgaccagggcccgctcccctgacgtcatctcctcagcctccacagcc
atgtcccaggacatgccggagatcgcctcccagaccctgcagcttcagcgggtcctgggg
tccagtcttgagtcttcccctctctccgctctgcagacggacagcatggcctcggctgcg
tccgccctgcacctgctcacctccccgcgcacagccaacaacaacagccttttgtccctg
gaactcggaggtgctgatatctcagtgggtggagcagtggagtcagagcccagactaagc
aacaccccgtgtctgctggagaacgccctatcacaggagaacccgggggcggggggaggg
tcagaggggagcatcagccacacaccctggcccgctgcgcctgacatcaccagagaaacc
aggaacagtctcagggacaatggtcttggagactgttcaagggaggaggcgaaggaccga
cacttgaactcaccttaccaccggcgctcctaccacctcacacagaacgacagtcaggac
gccggcgctgagcagagtgaccctgatgatgaggtgcccaccatggcagcatcctcagga
aactgtggtcgttcttcccacagactaccagttaaggagtggaagacctcaccacgaggc
tcaccaaaagtaaagaggaagaccaagaaagatgacagtgaatcgtctcagtccaggcta
atggaatctagtcagatgaatgcagaagtgcaggacgagctgctgatgctcctgcgcagc
cagcagagggagttaactgagctgcgtggacagattacagccatgcagagcaccatcatg
gtccaggtggagcacgtcctctccaaccaccaggaacaagaacagcgcagactagagcga
gtgctggcagagagtcagaatcatcagcagcagctccaggatcagctgagccagcagctc
agccacaccctcagctcagtgctcaccaacaggatggacaaggtgctgcgggaggagatg
aagaaaacagtcccacaaacaatttctaagagtctggagccagtgaccggtcagctgaac
aacacaattgctgctaagctgaccgctgtggagatcaccctgaaggacaatgtcagcaag
gtggtcaaatctaagaacacgacggatgcaattggtcgagcagcagccgaggcgttgcag
gggcccatccaggcggcctataaagacgccttccagagcatcgtgctgcctgttttcgaa
agaggatgccagtccatgtttcaacaaatcaacgacagctttaaacaaggcacacaagaa
tacatccagcagctcgagagccatatgaagcaaaggcagcagagagagctggaggcacgt
gagcccgtggtaggccagctccagcagatgatcgaaagcttccaaagctccaccgatcag
ctggccaataacatcacagcaaacgtccgggcagaggtccagcaccagatccagatgatg
gtgggaaatttgcaggagactattcttagccatgtgcagcgaatcgtcaaaggcgaggtg
accatggcgatgaaggagcagcaggcggtggtcacctccagcatcatgcaggcgatgagg
tcagcggccggcacccccgtcccaacagcgcaccacgactaccagacgcagcaggccaac
atcctgcagctgctccagcagggccagctcaaccaggcctttcagcaggctctgtcagcc
actgatctgaacctggtcctgtacgtgtgtgagaccatcgactcccagcaggtgttcggg
cagcacccctgcactctgagccagcccgtgctgctgtcgctcatccagcagctctcctcc
aacctcaccacccgctctgagctcaaaatcagctacctggaggacgccgtgatgaacctg
gaccacggcgaccccctgaccagagaccacatgtcttccgtgttggcccaggtcagacca
aagctcttcaccttcctgcagcaggacccccacagcccgctcagcaagagggcgcggcgc
ctcatgatgatgctgcagggcctcgtcagccactag
DBGET
integrated database retrieval system
