Trematomus bernacchii (emerald rockcod): 117491436 Help Entry 117491436         CDS       T09643                                  Symbol sf3b3 Name (RefSeq) splicing factor 3B subunit 3   KO K12830   splicing factor 3B subunit 3 Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben03040   Spliceosome Brite KEGG Orthology (KO) [BR:tben00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     117491436 (sf3b3)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:tben03021]     117491436 (sf3b3)    03041 Spliceosome [BR:tben03041]     117491436 (sf3b3)    03036 Chromosome and associated proteins [BR:tben03036]     117491436 (sf3b3) Transcription machinery [BR:tben03021]  Eukaryotic type   RNA polymerase II system    Coactivators     SAGA/TFTC/STAGA complex      117491436 (sf3b3) Spliceosome [BR:tben03041]  Complex A   U2 snRNP components    U2 snRNP specific factors     117491436 (sf3b3)  Complex B     117491436 (sf3b3)  Complex C    U2 SnRNP specific factors     117491436 (sf3b3) Chromosome and associated proteins [BR:tben03036]  Eukaryotic type   Histone modification proteins    HAT complexes     STAGA complex      117491436 (sf3b3)     TFTC complex      117491436 (sf3b3) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Beta-prop_RSE1_1st Beta-prop_RSE1_2nd CPSF_A Motif Other DBs NCBI-GeneID:  117491436 NCBI-ProteinID:  XP_033997301 LinkDB All DBs Position Unknown AA seq 1217 aa AA seqDB search MFLYNITLQRATGITHAIHGNFSGTKMQEIVVSRGKIIELLRPDANTGKVHTLLTVEVFG IVRSLMAFRLTGGTKDYIVIGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF LAVDPKGRAVMIGATEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP MFACLEMDYEEADSDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMTCQIADLANEDT PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRKHVEDEFDAYIIVSFVN ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA AFLNENLPEAIFGAPKAGAGQWASLVRLINPIQGTTLDLVQLEQNEAAFSVAVCRFPNTG DDWYVLVGVARDMILNPRSVSGGFIYTYRLISGGEKLEFVHKTPVEDVPLAIAPFQGRIL VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTSIHTIGQRVIVTDVSESLFWVRYRRNENQ LIIFADDTYPRWVTTACLLDYDTMAAADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG LLNGASQKAEVIMNYHVGETVLSIQKTTLIPGGSESMVYTTLSGGIGILVPFTSHEDHDF FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT PPEVSKKLEDIRTRYAF NT seq 3654 nt NT seq  +upstreamnt  +downstreamnt atgtttctgtacaacatcaccctgcagcgtgccactggcatcactcatgccatccatggg aacttttcaggaaccaagatgcaggagatcgttgtttccaggggaaagatcatagaatta ttgcggccagatgccaacacgggaaaggttcacactctgctcacagtggaggtgtttggt atcgtcagatccctgatggccttcagactcaccggaggaaccaaagactacattgttatt ggcagtgacagtggacgtattgtcatcctggaatatcatccatcaaaaaacatgtttgag aagatccaccaggaaacgtttggaaagagtggctgcagacgcatcgtccctggacagttc ctggccgtggacccaaaaggcagagctgtgatgataggagcgacagagaaacagaagctg gtttatattctgaacagagatgcagctgcgaggctcaccatttcctctccactggaagcc cacaaagccaacacactggtgtatcacgtagtgggagtcgacgtcggctttgaaaacccc atgtttgcctgcctggagatggactatgaggaggctgacagtgacccgacaggagaagct gccgccaacacgcaacagacgctcaccttttacgagctggacctcgggttgaatcacgtg gtgcgaaagtacagtgaggctttggaagagcatggaaactttctcatcactgttcctggt ggttcggatggtcccagtggagttctgatctgctccgaaaactacatcacctacaagaac tttggagaccagcctgacatccgctgtcccatcccgcgacgcaggaacgacctggatgac ccggagcgcggcatgatttttgtctgctcagcaactcacaagaccaagtccatgttcttc ttcctggcccaaactgagcagggagacatcttcaaggttacgctggaaacagatgaggaa atggtcacagaaatccggctgaaatactttgacacaatccccgtggcaacagccatgtgt gtcctgaagactggcttcttgtttgtgtcttcagaatttggcaaccattacctttaccag attgctcacttgggtgacgatgacgaggagcccgagttctcctctgcaatgcccctggag gagggagacaccttcttcttccagccccgccccctcaagaacctcgtgctggtggacgaa caggagaacttatcccccatcatgacctgtcagattgctgatttggccaatgaagataca ccacagttgtacgttgcctgtggacgaggaccacggtctactctgagggtccttagacat ggactggaggtatcagagatggctgtgtctgagctgcccggtaaccctaatgctgtgtgg acagtacgcaaacatgtagaagatgagtttgatgcctacatcatcgtgtctttcgtgaac gctactctggttctttccatcggagagactgtagaggaagtgacagattctggattccta ggaacaacacccactctctcctgctcgctgctcggtgaagacgcgttggtgcaggtgtac ccagacggtatccgccacatccgagcagacaagcgtgtgaacgagtggaagactcctggc aagaaaaccattgtgcgctgcgctgtgaaccagcgacaggtcgtcatcgctctcactgga ggggagctggtctactttgagatggacccgtctggccagctgaatgagtacacagagcgt aaggagatgtctgcagatgtggtgtgtatgagcctggctaacgtccctcctggtgagcag cgctcgcggttcctcgctgtgggactggtagacaacaccgtgcgaatcatctccctggac ccttcggactgcctccagccgttgagtatgcaggccctgccagcccagcctgagagtctg tgtattgttgagatgggaggagtggagaaacaggatgaactcggagaaaagggaaccatc ggcttcctctacctcaacatagggctccagaacggcgtgctgctgaggactgttttggat ccagtgactggcgacctgtcagacaccagaacacgctacctggggtcccgacccgtcaag ctcttcagagtcaggatgcaggggcaggaagctgttctggccatgtccagtcgctcctgg ctgagctactcgtaccagtcgcgcttccatctgaccccgctgtcatacgagactctggag tacgcttctggctttgcctctgagcaatgccctgaaggcatcgtcgccatttccaccaac acactgagaatcttggctttggagaaattgggagcagtcttcaaccaggtggcctttcct ctgcagtacactccgaggaagtttgtaatccacccggagaccaacaacctcattttgatc gagaccgaccacaatgcctacaccgaggcaaccaaagcccagaggaagcaacaaatggct gaggagatggtggaggctgctggtgaagatgaaagagaactggccgctgagatggctgct gcgttcctcaacgagaacctcccagaagctatttttggtgcacctaaagccggagcaggg cagtgggcctcactggtgcggctcatcaaccccatacagggaacaacactggacctggtg cagctggaacagaacgaagctgcgttcagtgttgcagtgtgtcgcttccccaacacagga gatgattggtatgtcctggtgggcgttgccagagacatgatcctcaaccccagatcagtg agcgggggattcatctacacctatcggctcatcagcggaggggagaaactggagtttgtg cacaaaacaccagtcgaggacgttcctctggctattgctccattccagggtcgcatcctg gtgggagtgggcaaactgttgagaatctacgacctgggaaaaaagaagctgcttcgcaag tgtgaaaacaagcacgttcccaacctggtgaccagcatccacaccatcggccagcgtgtg atcgtgacggacgtttcggagagcctgttctgggtccgctacagacgcaacgagaaccag ctgatcatcttcgccgatgacacgtatccccgctgggtgaccacggcctgtctgctcgac tacgacaccatggccgccgctgacaagtttgggaacatcagtatcgtgcgccttccgccc aacaccagcgatgatgtggatgaagaccccactgggaacaaagctctatgggacagaggc ctccttaatggagcatcacagaaggctgaggtgattatgaactaccacgtaggagagaca gtgttatccatccagaaaaccactctgatccccggaggctccgagtccatggtctacacc acgctgtccggaggcatcggcattctggtcccgttcacgtcacatgaggaccatgacttc ttccagcatttagagatgcacatgcgctctgagttccccccactctgcggcagagaccac ctcagcttcagatcctattacttcccagtcaagaatgtgattgacggagatctgtgtgag cagtttaacagcatggatcctcacaagcagaaaagtgtggcggaggagctggacagaaca ccgcccgaggtgtctaagaaactggaggacattcgtactcgctacgccttctaa

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