Trematomus bernacchii (emerald rockcod): 117492091
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Entry
117492091 CDS
T09643
Symbol
cacna1ia
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04010
MAPK signaling pathway
tben04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117492091 (cacna1ia)
04020 Calcium signaling pathway
117492091 (cacna1ia)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117492091 (cacna1ia)
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117492091 (cacna1ia)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
117492091
NCBI-ProteinID:
XP_033998140
LinkDB
All DBs
Position
Unknown
AA seq
2262 aa
AA seq
DB search
MLLNPSPVNTWFERISIMVIVLNCVTLGMYQPCENIDCTSDRCQILQAFDAFIYIFFALE
MVVKMVALGIFGRRCYLGDTWNRLDFFIVMSGMVEYSLDLQNINLSAIRTVRVLRPLKAI
NRVPSMRILVNLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLLRNRCYLEENFTLPS
SSGMTLPAPYYQPEEDDERPFICSLAIHNGIRSCHDVPARREGGRTCCLDREDALHRQGL
GLSPEPLANGSGAGEAIGLCIDWNLYYTRCHTGSTNPHKNAINFDNIVYAWIVIFQVITL
EGWVEIMYYVMDAHSFYNFIYFILLIIIGSFFMINLCLVVIATQFSETKQREHQLMQEQR
AQCLSSSTLASMAEPGDCYEEIFQLVCHVLRKAKRRSAALYYTLRGKTPPAVGGRGNRRG
GGNVNGERHHSRHPKTFHCPHQSKPDHGSQPLENSISLSVPQKPEDCPICVLSLKDGVRA
EGDSGKGEEEAEDAVKETGKEENHLEERGDGERKRKRTCFRHCIETWNDMRRKLWGIVES
KYFSRGIMIAILINTISMGIEHHNQPDELTNVLEICNIVFTSMFTLEMILKLTAFGFFEY
LRNPYNIFDGIIVIISVCEIIGQADGGLSVLRTFRLLRVIKLVRFMPALRRQLVVLMKTM
DNVATFCMLLMLFIFIFSILGMHIFGCKFSLKTEAGDTVPDRKNFDSLLWAIVTVFQILT
QEDWNMVLYNGMASTSPCAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSFSDDD
RSSCNFEENDKQKDSLHLSDPKICTLTPNGHLDLSPLSHGLFPGERLTFALDSRKNSVNS
LGRANLEQRALFSGRSYHNWGRPCAPHPQALWARRSSWNSLGGCRPFSSSSPSASPAITT
TSARPFYGYGLGGLGGVVGGSLRIRGPRASSSPRRHLHHVLQDEEESLISPPPIPLHSLH
LPHPMLPGHFVPRRDRRALSLELPHLLQVPGPPHVPLPPHHPLPPLTLHAQHRKKSFSGG
AVISGGGGSGHDSPGGLVGVHQDCNGKIPLSQLLQPPHRHHTEHAGGVNPQSQLMSDVFP
QVNTRSKDREDLDDDIEYSLCFRVEKMLEAYKPDWCESREEWSVFLFSPRNRFRQICQSI
VAHKLFDYVVLAFIFSNCITVALERPEILQGSLERVFLTISNYVFTAIFVTEMTLKVVSM
GLYVGDHSYLRSSWNVLDGFLVFVSLIDIVVSMAGGAKILGVLRVLRLLRTLRPLRVISR
APGLKLVVETLITSLKPIGNIVLICCAFFIIFGILGVQLFKGKFFHCFGPDVKNITNKSD
CILANYKWVHHKYNFDNLGQALMSLFVLASKDGWVNIMYHGLDAVAVDQQPVTNNNPWML
LYFISFLLIVSFFVLNMFVGVVVENFHKCRQNQEVEEAKRREEKRQRRMEKKRRKAQKLP
YFASYGHIRLMVHTLCTNHYLDLIITFIIAINVITMSLEHYDQPRSLDLALKYCNYFFTS
MFVLESALKLTAFGFRRFFKERWNQLDLAIVLLSVMGITLEEIEISAALPINPTIIRIMR
VLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGELVCTV
DYPCEGMGRHATFENFGMAFLTLFQVSTGDNWNGIMKDTLRECPPDHGTDVDNATDVDYA
CNPSLQFISPMYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAQEEAEMDAEIELELAQG
TLCCMGGERKMRHSAGSTHSGAFNLRDSSLNLYSPAQESQWLDSVSLLIKDSLEGEMLMI
DNLSGSVFHHYSSPPPICRDCKGHPQEQIRMAEIEQASLRSEQMSDKSSSPALPDDLSLD
EHTSYQLLPQECKGRCSSDSRSSDEAGGGGSHAGGPPTQTVVQSLGQPCRPLIAGIDVET
AIQEMEMQTHRPHTCTPHCSPGGISRSSNQERNGEGGGGASGVSPLFHLPAEFFHPAVAA
IPAPPRSRSLRLTRGLRLTSPASWASLRSPGAHSKMLCTQYPSHSDSSLATGSSEGSLQT
TLEEGLSFSISPPQNLELSLPTAPLPLVCPLPLPEDSTAISSPVRTLRQRPSPSSALTLL
ATKGHQRSQSSGRGSTSPGYTRDDSIDPSDEDLGIGIGSSIGGCGSSQAGNSEHLSETLS
SLSLTSLLSPSSLVYPGVAVKKCNSTGSLDQGGMLLSSRGRESRREILGLELMDPQGFLA
NPWTGVLVDTRGEGRGEIVDGQQGFKVKSSSQTTVGPCRENR
NT seq
6789 nt
NT seq
+upstream
nt +downstream
nt
atgctccttaaccccagtcctgttaatacgtggttcgagaggattagcatcatggtgatc
gtgctcaactgtgtgacactgggcatgtaccagccctgtgagaacatcgactgcacctcg
gaccgctgccagatactgcaggccttcgatgcattcatctacatcttcttcgcactggag
atggtggtgaagatggtggctcttgggatctttggccgtcgctgttacttgggagacacc
tggaacaggctggacttcttcatcgtcatgtctgggatggtagagtactctctggacctg
cagaacatcaacctttcggctattcggacagtgcgggtccttcggcccctcaaagccatc
aacagagtgccaagtatgcgtatcctggtgaacctgctgctcgacactctgcccatgctg
ggcaacgtgctgctgctgtgcttcttcgtcttcttcatcttcggtatcatcggcgtgcag
ctgtgggcggggctactgaggaaccgctgttacctggaggagaacttcaccctccccagc
tcttcaggtatgaccctacctgctccatactaccagccagaggaggatgacgaacggccc
ttcatctgctccctggcaattcataatggcatcaggtcatgtcatgatgtgccggcgagg
cgcgaaggaggacgcacatgctgcctggacagggaggacgcgctccacagacagggtttg
ggcttgagtcctgaaccactggccaacgggagcggtgccggtgaagcaatcggtctgtgc
atcgactggaacctgtattacactcggtgccacacaggaagtactaacccccacaaaaat
gccattaactttgacaacattgtctacgcctggatcgtcattttccaggtgatcactctg
gagggctgggtggagatcatgtattatgtgatggatgcccattccttctacaacttcatc
tacttcattttactcatcattattgggtcattcttcatgatcaacctgtgcctggtggtc
atcgctacccagttctcggagaccaaacagcgggagcaccagctgatgcaggaacagagg
gcgcagtgcctgtcctcctccaccctcgccagcatggctgagccgggagattgctacgag
gagatcttccagctggtgtgccacgtcctccgcaaggctaagaggagatcggcagctctc
tactacacgctgaggggcaaaaccccgccggctgttggtggcaggggcaacaggcgtggg
gggggaaatgtgaacggagagcgtcatcattccaggcacccaaaaacattccactgtcca
caccagagcaagccagaccacggctctcagccacttgaaaactccatcagtctgtctgtc
cctcagaaacccgaggactgtcctatatgcgtattatcactgaaagatggggtgagggcg
gagggagactccggcaaaggagaggaagaagccgaggatgcggtgaaagagacgggcaag
gaggagaaccatctagaggagaggggggatggagagaggaagaggaagaggacgtgtttt
cgacattgtatagaaacctggaacgatatgaggaggaaactttggggcattgtagagagc
aagtacttcagcaggggcattatgatcgctattctgatcaacaccatcagtatgggcatc
gagcaccataaccagcccgatgagctgaccaatgtcctggagatctgcaacattgtgttc
accagcatgttcaccctggagatgatcctgaagctgactgcttttggcttctttgagtac
ctgaggaacccctataacatctttgatggcatcatcgtcatcatcagtgtgtgtgagatc
atcggccaggcagacggcgggctgtcagtgctgaggaccttcaggctgctgagggtcatt
aagctggtgaggttcatgccggcgctcaggcggcagctggtggtgctgatgaagaccatg
gacaacgtggccactttctgtatgctgcttatgctcttcatcttcatcttcagtatcctg
gggatgcatatctttggctgtaagttcagtctgaagacggaggcaggagacaccgtgcct
gacaggaagaactttgactccctgctctgggccatcgtcactgtcttccagattctgact
caggaggactggaacatggtgctttacaatgggatggcatccacctcgccctgtgctgct
ctctacttcgtagctctgatgacttttggaaattatgtgctcttcaatttactggttgcc
atcctggtggagggttttcaggctgagggtgatgcaaaccgctctttctcggacgacgac
aggtcttcctgtaattttgaggagaatgataagcagaaagactctcttcatctctcagac
ccaaagatctgtacgctgactcctaacgggcaccttgacttgtccccactgtcccatggt
ctgtttccgggagagaggttgactttcgctctggactccaggaagaacagtgttaattct
cttggtagggccaacttggagcagagggctttgttttcaggtcgaagttaccacaactgg
ggtcgcccgtgtgccccccaccctcaggccttgtgggcccgtcgctccagctggaacagc
ctgggaggatgccggcctttctcctcctcgtctccctccgcgagtccggccatcaccacc
acctccgcacggcccttctatggctacggcctggggggccttggcggcgtggttggagga
agtcttcgtatccggggtcctcgcgcctcctcgtccccgcggcgccacctccaccatgtc
ctccaagatgaggaggagtctctcatatctcctcctcctattcctcttcactccctgcac
cttcctcaccctatgctccctggacactttgtacccaggagggaccgcagggccctttcg
ctagagctgccccacctgctgcaggtgccaggacccccgcacgttccactgccgccacac
caccctctgccccccttgacgctccacgctcaacacaggaagaagagcttctctgggggg
gcggttatcagtggaggcggtggcagtggacacgacagtccggggggcttagtaggggtt
caccaagattgtaatgggaagatccctctttctcagcttctgcagcccccccacagacac
cacactgagcatgctggaggggtgaacccccagagccagctgatgtctgacgtcttcccc
caggttaacacacgcagcaaggaccgggaggacctggatgatgacattgaatatagcttg
tgcttccgcgtcgagaagatgttagaagcgtacaaaccggactggtgtgagtccagagag
gagtggtctgtcttcctgttctccccacggaacaggttcagacagatatgccagtccatt
gtcgcccataagctgtttgactatgtggtgttggccttcatcttctccaactgcatcaca
gtagctctggagaggcctgagatacttcagggcagcttggaaagagtcttcctcaccatc
tccaactacgtctttactgccatatttgtgaccgagatgacactcaaggtggtctccatg
ggtctgtatgtaggggatcattcttacctgcggagcagctggaacgttctggatggcttc
ctggtttttgtgtctttgattgacatcgtggtgtccatggcgggcggggccaagatcctg
ggtgtgctcagagtgctcaggctgctaagaacactgcgtcccctcagagtgatcagcaga
gctccaggtctgaagctggtggtggagaccctcatcacctccctcaaacccatcggcaac
attgtcctcatctgttgtgcattcttcatcatctttggcattcttggggtccagctgttt
aaaggcaagttctttcactgctttggccccgacgtcaaaaacatcaccaacaagtccgac
tgtatactagccaactacaagtgggtccaccacaagtacaactttgacaacctggggcag
gctctgatgtccctgtttgtgctagcctcaaaggacggctgggtcaacatcatgtatcac
ggcctggatgctgtggctgtggaccaacagcctgtgaccaacaacaatccgtggatgctg
ctgtatttcatctccttcctgcttattgttagcttcttcgtcctcaacatgtttgtcggt
gtggttgtggagaatttccacaagtgtcgtcagaaccaggaggtggaagaggccaaaagg
cgtgaggagaagcgtcagcggcgcatggaaaagaaaaggagaaaagcccagaagctgccc
tactttgccagctacggccacatacgcctgatggtccacacactgtgcacaaaccactac
ctggacctcatcatcaccttcatcatcgccatcaacgtcatcaccatgtccttagagcac
tacgatcaacctcgttctctggatctcgccctgaagtactgcaactatttcttcacttcc
atgtttgtgctcgaatcggcactcaaactcaccgccttcggcttccgtcgcttctttaaa
gaaaggtggaaccagttggacctcgccattgtgcttctgtcggtgatgggcatcaccctg
gaggagatcgagatcagtgctgccctgcccatcaaccccaccatcatccggatcatgaga
gtactgaggatagcccgagtgctgaagctgctgaagatggccacagggatgagagccctt
ttggatacggtggtccaagccctgcctcaggtgggtaacctgggcctgcttttcatgctg
ctgtttttcatctacgccgccttaggagtagagctatttggagaacttgtatgcaccgta
gactatccatgcgagggaatgggtcgtcacgctacctttgagaactttggcatggccttc
cttaccttatttcaagtctccacgggcgacaactggaatggcatcatgaaggacacattg
cgggagtgcccaccagaccacggcactgatgtggacaatgccactgatgtggactatgcc
tgcaatcctagccttcagtttatctcgcccatgtactttgtctccttcgtgctcaccgcc
cagttcgtgctcatcaatgtggtggtggccgtgctgatgaagcacctggacgactccaac
aaggaggcccaagaggaggcggagatggatgcagaaattgagctggagctggcccagggc
accctctgttgcatgggcggggagaggaagatgagacattcagcaggcagcacgcactca
ggagccttcaacctgcgggactccagcctcaacctgtactcaccagcacaagagagccaa
tggctggacagcgtatctctcttgatcaaggattcactggagggggagatgctgatgatc
gacaacctctccggttctgtcttccaccattattcttctcctccacccatctgcagagat
tgcaagggccacccacaagagcagatcaggatggcagagattgagcaggcatccctgagg
tcagagcaaatgtcagacaagtcctcgtcccccgccctgccagatgacctcagcctggac
gaacacacctcctatcagctgctgccgcaagagtgcaagggaaggtgcagcagtgactcc
cgcagctctgatgaggctggagggggggggagtcatgcaggaggcccccccacccagacg
gtggtgcagagcctgggccagccgtgcaggcccctcatcgctgggatcgatgtggagact
gcaatacaggagatggagatgcaaacacatcgaccacacacatgcactcctcactgtagc
cctggtggcatttccagaagcagcaaccaggaaagaaacggagaaggtggaggtggagcg
agtggcgtgtctcctctctttcatctgcccgcagagttcttccaccccgcagtagcagcc
atcccagcacccccccgcagcaggagcctacggctgaccaggggcctcaggctgacctcc
cctgcctcctgggcctcactccgctccccaggggcccacagcaagatgctctgcacacag
tacccgtcccacagtgactcgtcccttgctacaggcagctctgagggcagcctccagacc
accctagaagagggcctgagcttcagcatctccccaccacagaacttggagttgtctttg
ccgacagctcccttaccactcgtgtgccctctcccgctgcctgaagacagcaccgccatc
tcctccccggtccggaccctgagacagcggcccagcccctcgtcggccctcaccctcctg
gccaccaagggccaccagcggagccagagcagtggccgagggagcaccagcccgggctac
acccgggacgactccatcgacccttcagacgaggacctgggcataggtattgggtcgtcc
attgggggctgtggctccagccaagcgggcaacagtgaacatttgtcagagacgctgagc
agcttgtctctcacatccctgctgtcccccagctccctggtgtacccgggggtagcagtg
aagaagtgcaacagcacaggcagcctggaccaaggggggatgctgctgtcgtcccggggc
agggagagccgcagggagattctgggactggagcttatggacccccaaggctttttggcc
aacccttggacgggagtattggtggatacaagaggagaaggaagaggggaaatagtagat
ggtcagcaagggttcaaagtgaagagctcaagccaaacaacagtagggccttgtcgggaa
aacagatga
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integrated database retrieval system
