Trematomus bernacchii (emerald rockcod): 117492251
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Entry
117492251 CDS
T09643
Symbol
lrrc4ba
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117492251 (lrrc4ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117492251 (lrrc4ba)
Cell adhesion molecules [BR:
tben04515
]
Immunoglobulin superfamily
NGL family
117492251 (lrrc4ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_14
LRR_9
ig
V-set
Ig_2
LRRNT
LRR_NXF1-5
Ig_6
Motif
Other DBs
NCBI-GeneID:
117492251
NCBI-ProteinID:
XP_033998291
LinkDB
All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MRIATLTCLPGHSPLLFLLAQLLLRLLHAGPELVRAASACPSLCTCSNQASRVICTRQNL
DEVPESISVNTRYLNLQENSIQVIKSDTFKHLRHLEILQLSKNQIRQIEVGAFNGLPNLN
TLELFDNRLTLVPSHAFEYLSKLRELWLRNNPIETLPGYAFHRVPSLRRLDLGELKKLDF
ISDAAFVGLINLRYLNLGMCGLKDIPKLTALVRLEELELSGNRLEIIRPGSFQGLVSLRK
LWLMHSQVSVIERNAFDDLKSLEELNLSHNSLHSLPHDLFTPLHQLERVHLNHNPWICNC
DVLWLSWWLKETVPSNTTCCARCHAPPFLKGKYIGELDQSHFTCYAPVIVEPPTDLNVTE
GMAAELKCRTSTSTTSVNWITPNGTLMTHGSYKVRISVLHDGTLNFTNVTLRDTGQYTCM
VTNAAGNTTATAVLNVTAADASVNYTYFTTVTVETVETPVDGDYPTEINHTIIHVPTPPS
YLWTDVSTTASSLSAGWSSSSPRSTRPTFTVPITEPGFSGLDDVMKTTKIIIGCFVAITF
MAAVMLVVFYKLRKQHQLHKHHGPARAIEIINVEDELGAGASGRGSGISGGSTVTQSGSS
GIGGGQSLRLHHPEMVNLPNLARSEHLNHYYKTHHFNNNMMSLGMGTGMGLNNNNNPSPC
SQSQNTSMSCSQVPTSGGAPMGGTLTSPVSQLGLHSSLKGIMGKCQNEPLLFKSSSKENV
QETQI
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgccacgctgacctgccttcccggccattcccccctcctctttctattggcc
cagctgctactgcggctcctccacgctgggccggagctggtgcgagccgcctccgcctgc
ccctccctctgcacctgctccaaccaggccagccgagtcatctgcaccaggcagaacctg
gatgaggtacccgaaagcatatcagtcaacacacgatacctcaacctgcaggaaaactcc
atacaggttatcaagtcagacactttcaagcacttgaggcaccttgagattctccagctc
tcaaagaatcagatccgtcagattgaagtcggagcattcaatggcctccccaacctcaac
acactggagctcttcgacaaccgcctcacattggtgccatcacacgcctttgagtacctc
agcaagttgcgggagctgtggctgcgcaacaaccccattgagactctaccaggctatgcc
ttccaccgagtgccctcacttaggcgcctggacctcggtgagctcaagaagttggatttc
atctctgatgcagcctttgttggcctcatcaatctacgctaccttaacctgggcatgtgc
gggctgaaggacattcccaaactgacagcccttgtgcgtttggaggagctggagctgtca
ggaaaccgactggagatcatccgacccggttccttccagggccttgtgtctctccgcaag
ctgtggcttatgcactcacaggtgtcagtcattgagcgcaacgccttcgatgacctaaaa
agtctggaagagcttaacctgtcccataactccctgcactccttgcctcatgacctcttc
acaccccttcaccagctggagagggtacaccttaaccataacccctggatctgcaactgt
gacgtcctttggctaagttggtggttgaaagagacggtgccgagcaacaccacctgctgt
gcccgctgccacgctcccccattcctaaagggcaagtacattggagagcttgaccagagc
cacttcacctgctatgcaccggtcattgtggagccacctacagacctcaatgttaccgag
ggtatggccgctgagctcaagtgtcgcacaagcacctccacaacatctgtcaactggatc
acccctaatggcactctaatgacccatggctcttacaaggtgcggatatctgtcctgcat
gatggcacacttaacttcacaaatgtgaccctgcgtgacacgggccagtacacctgcatg
gtaaccaatgctgctggcaataccacggcaactgctgtccttaatgtcactgctgctgat
gccagtgtcaactacacctactttacaacagtcacagtggaaacagtggagaccccagta
gatggagattatcctacagaaatcaatcatacaataatccatgtccccacgcccccgagc
tacctgtggactgatgtttctaccacagcctcctccctatccgcaggctggtcttcctcc
tctcctcgttccacccgacccacgttcactgtgcccatcactgagccaggcttctcaggc
ctggatgatgtgatgaagaccacaaagatcatcattggctgctttgtagccatcacattc
atggcagcggtgatgttggtggtgttctacaagctgaggaagcagcaccagctgcataaa
caccatggccctgctcgtgccatcgagatcatcaatgtggaggatgagcttggggccgga
gccagtggtaggggcagcggtatctcaggaggctccacagtgacgcagagtggaagcagt
ggaataggagggggacagagcctcaggctgcaccatccagagatggtcaacttgcccaac
ctggcacgatcggagcacctcaaccactactacaaaactcatcacttcaacaacaacatg
atgagccttggcatgggcacgggcatgggactcaacaacaacaacaacccctcgccttgc
tcccagtctcagaacacctccatgtcttgttcccaggttccaaccagtggaggagcaccc
atgggtggcaccctgacatcccctgtgtcccagttgggtctccacagttctctgaaagga
attatgggaaaatgccagaatgagccactgctttttaagagcagctcaaaggaaaatgtg
caagagactcaaatttga
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