Trematomus bernacchii (emerald rockcod): 117492471
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Entry
117492471 CDS
T09643
Name
(RefSeq) ATP-dependent RNA helicase DDX1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117492471
03016 Transfer RNA biogenesis [BR:
tben03016
]
117492471
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117492471
Spliceosome [BR:
tben03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117492471
Transfer RNA biogenesis [BR:
tben03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117492471
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
117492471
NCBI-ProteinID:
XP_033998633
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEELDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSMPV
IQIVYETLKDEQEGKTGRASIKTGGTIFNNWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDVDKGQMSFSKNGAVLGVAFEIPQQLKSQPFFASCVLKNAELKF
NFGGEDFKNAPKSGCVAMDQAPEGHAVKSTQAGSAKVSQVKATSNSPKALIIEPSKELAE
QTLNNVIQCAKYVDNPKLRNLLVIGGVPAKDQMAALEHGVDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDAKKLSE
RIMHFPTWVDLKGEDSVPESVHHVVVPVNPKNDRLWERLGKNHVRTDEVHAKDNTRPGAN
SAEMWSEAIKMLKGEYTVRAINEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKSHQL
SCVCLHGDRKPNERKTNLERFKKKEVRLLICTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNMRLKEDGGYTIWYKEKELLS
DIEEHLKCTITQCEPDIKVPLDDFDGKVTYGQRKVLGGGNYKGHVDALAPTVLELAILER
EAQSSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttcggaaatgggtgttatgcctgaaatagcgcaggctgtggaagagcta
gactggctactacctactgacatccaggcggagtctattccacttattcttggtggagga
gatgtgcttatggcagcagaaactggtagtggtaaaacaggggccttcagtatgccagtg
atccagattgtgtatgagaccctgaaggatgagcaggagggcaagactggcagagcttcc
atcaagactggaggaactattttcaacaactggcagatgaatccttatgaccgcagccca
gcctttgcaattggtccagatggactgtgctgccagagcagggagttcaaagagtggcat
ggctgtcgctcaacaaaaggggttaccaaagggaagtactactatgaggtgacctgccat
gaccagggtctatgtcgcattgggtggtccaccagtcaggcagccctggacttgggaact
gataagtatggttttggctttggtgggactgggaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcatgataccattggatgctacttggatgtagacaag
ggccaaatgtccttctctaaaaatggtgcggtcctaggtgtggcttttgagatccctcaa
caattgaagagtcagcccttctttgcctcctgcgttctaaagaatgcggagctgaagttc
aactttggaggagaagactttaaaaatgcccccaagagtgggtgtgttgccatggaccag
gcgccagagggccacgcagtcaaatctactcaggcaggcagtgccaaagtgagtcaggtg
aaagcaacatccaattcacccaaagccctgatcatcgagccatctaaagagttggccgaa
caaaccctcaacaatgtcattcaatgtgcgaaatacgtggataaccccaaactcaggaac
ctgttggtgattggtggtgtgcctgccaaggaccagatggctgctctggaacatggggtt
gacattgtcgtgggaacacctggaagactggacgacctcatatccaccgggaagctcagt
ctgtcccaagtccgctttctcgtcctggatgagtgtgatggccttctgtccgcaggctat
acagactttatcaacaggattcataaccaaatccctcaggtcacctctgatggcaagaga
ctgcaggtgattgtctgttcagccacgctgcattcgttcgacgcgaagaagctgtctgag
cgtatcatgcactttcccacatgggtggatctgaagggggaggactctgtgcctgagagt
gtgcaccatgtggttgtgcctgtcaatcccaagaacgatcgcctctgggagcgcctgggc
aagaaccacgtccggactgatgaggtccatgccaaagataacaccagaccaggagcaaac
tctgcggaaatgtggtcagaagccatcaagatgctaaagggcgagtacacagtgagggcc
atcaatgagcacaagatggaccaggccataatcttctgtcgcaccaagatcgactgcgac
aacatggaacagtacttcattcagcaaggaggaggtccggacagtaaaagccaccagttg
tcctgcgtttgtctccatggtgatcgtaagcccaatgagcggaagactaacttggagcgt
ttcaagaaaaaagaagtgaggctgttgatctgcacagatgtagctgccagaggaattgac
gtccacggagttccgtatgtgattaacgtcaccctgccagatgagaagcagaattacgtc
catcgtatcggcagagtcggaagagccgagagaatgggactggccatttccttggttgct
atggaaaaggagaaggtgtggtaccacgtttgtgcgaacagaggcagaggctgctacaac
atgcgactgaaggaggacggaggttacaccatctggtacaaagagaaagagctcctgtca
gatattgaggagcatctgaagtgcaccatcacacagtgcgagccagacatcaaagtacct
ttggatgactttgatggaaaggtcacctatggtcagcgtaaggttttgggaggtggtaac
tacaagggtcacgtggatgctctggcaccaacggtcctggaactggctatcctcgagagg
gaagcccaatcttccttcctccacctgggatacatgccaaaccagcttttcagagctttc
tga
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