Trematomus bernacchii (emerald rockcod): 117492497
Help
Entry
117492497 CDS
T09643
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117492497 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117492497 (hbs1l)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117492497 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
117492497
NCBI-ProteinID:
XP_033998670
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MSRHRNVRGYNYDEDFDDDDVYGQSVDDDYCISPATANQFIYSRQERQAPREQPLEEEAY
EDDVPMSPTVSLNLDPLDQAKLFSCLDHMRTVLGDAVQDSVLTQAAISCGFDPQKALDAV
LSEDAKTAPVTKSTNEETASAAIASQEKAPLPQRIKKEAVAEKAKSRDVSHNKLDSEVVP
KVARMTVSGKKQTMGFDVPSVNGVVGTPERPTAASASEATPKRPETPSKGSNGDEPSTVP
TPGRSGKARQTINIKEELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMH
KYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETDSKVVTLMDAPGHKDFIP
NMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAVNKMDQVNW
QQQRFQDITSKLGHFLKQAGFKDSDVYYIPSSGLSGENLTTRSSVSELTSWYSGPSLMEQ
IDAFKAPQRSLEKPFRLCVSDVFKDQGSGFCVSGKIEAGYIQTGERILAMPPNETCTVKG
ITLHDEPLDWAAAGDHVSLTVTGMDIIKINVGYVFCDPKEPVRVCTRFRARILLFNIEVP
ITQGFPVLLHYQTVSEPATIRKLISVLHKSSGDVIKKKPKCLSKGMNAIVEIQTQRPVAL
ELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcacagaaatgttcgaggttataactacgatgaagactttgacgatgatgac
gtgtatggacagtctgtggatgatgactactgtatatcaccagcaacagcaaatcagttc
atctactcacgtcaagagaggcaagcaccaagggagcagcctttagaagaggaagcatat
gaagatgacgtacccatgtcccctaccgtcagcctcaacctagaccctcttgatcaagcc
aaactgttttcctgtctggaccatatgcggactgtgttgggagatgcagtgcaagactca
gtcctgacccaggcagccataagctgtggatttgacccacagaaggccttggatgcagtc
ctctctgaagatgctaagacagccccagttaccaaaagcaccaatgaggagacagcttca
gccgcaatagcaagccaggagaaagcgccgcttccacaaagaatcaagaaagaggccgtc
gctgagaaagctaaaagcagagacgtgtcccacaataaactggactctgaagtcgtcccc
aaagtggcccgcatgaccgtctcagggaagaagcagaccatgggcttcgatgttcccagt
gtgaacggtgtggtcgggacccctgaacgccccacagcagcctcggcctccgaggccacg
cccaagcgtccagagactccatctaaaggctcaaatggagacgagccctccacagttccc
accccgggacgctctggaaaggcccggcagacgatcaacatcaaggaggaactggagaag
aggcagggcggcaaacctctgttaaatttggtggttataggtcatgtggatgcaggtaaa
agcactctgatgggccacctgctttatctgctgggcaacgtcaacaagcgcaccatgcac
aagtatgagcaggagtccaagaaggcgggaaaggcctcctttgcttatgcttgggtcctg
gatgaaactggcgaggagagggacagaggtgtgacgatggatgtgggcatgaccaagttt
gagacggactctaaggtggtgactctaatggatgcgcccggacacaaagacttcatcccc
aacatgattacaggagctgcacaggccgacgtggcggtgctcgtagtggacgccagccgg
ggggagttcgaggcgggcttcgaggctggggggcagaccagagaacacgccctgttggtg
cgctcgctcggcgtcactcagctcgctgtcgctgtcaacaagatggaccaggtaaactgg
caacaacagcgtttccaagacattacttccaaacttggacattttctcaagcaggcagga
ttcaaggactctgatgtttactacatccccagcagcggcctgtcaggagagaacctcacc
accaggagttcagtgtcagagctcacatcctggtactctggccccagcctgatggagcag
attgacgccttcaaagcccctcagcgatctttagaaaaaccgttcagactgtgcgtttcc
gatgtgttcaaagaccagggttcaggcttctgtgtttccgggaagatcgaggccggttac
attcagaccggagaaagaatactggctatgccccccaatgaaacctgcacggtcaaaggt
atcactcttcacgatgagcctctagactgggctgcagcaggagaccatgtcagcctgacg
gtcaccggcatggacatcatcaagatcaatgtgggctatgtgttctgtgatcccaaggag
cctgtacgagtgtgtactcggttcagagcccggatccttctcttcaatatcgaggtcccc
atcacacaaggcttcccggtattgctgcattaccaaacagtgagtgagccagccaccatt
aggaaactgataagtgttctacacaaaagcagcggcgacgtcatcaagaagaaaccaaag
tgtttgagtaaaggtatgaatgccatcgtggagatccagacgcagaggccggtggcatta
gagctgtacaaagactacaaggaactcggccgcttcatgctcagatatgtcggctccacc
atcgctgcaggggtcgtcactgagatcaaagaatga
DBGET
integrated database retrieval system
