Trematomus bernacchii (emerald rockcod): 117492547
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Entry
117492547 CDS
T09643
Symbol
casc3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117492547 (casc3)
03015 mRNA surveillance pathway
117492547 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117492547 (casc3)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117492547 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
117492547
NCBI-ProteinID:
XP_033998739
LinkDB
All DBs
Position
Unknown
AA seq
779 aa
AA seq
DB search
MADRRRRRRRASQDSEDDDESGSGSDSKKSGSPTTKSRVREPEPPEVTATRPEPKPVVES
ECESEDGVGEAVLSDYDSADPEENGSHSEGVEEEEEAEQFSDEEAPAAPTEPKPSTTAEG
PATVEEVVDVEEVQDGVEEEEVEEEVEEEEEDKNEEKEAEGEEGGQSKEESKAEEKGDLT
GERQSGDGQESTDDPETKAGGIPGQKLDDDEDRKNPAYIPRKGLFFEHDVRGHAQEEERP
KGRNRKLWKDEGRWDHDRFREEEQAPKSREELIAIYGYDIRNGGGSGERPYRQRRPRQSL
SPGRDKRWGDGGERPVRSWHSGGGGRGGAPPSSTSPSNLPLTSNQRSSNASRQPPPRSRP
SHPQQNQMQHPPQSQYRNNELNAPQMHPRERPGPKAQCEPTGDRGVVSRGGRGGGRAPSV
LVEDITFSQGGSKEADPGVVTTSQQGGYPSASPRRQQQEQRGSGDMSSSSSDPPQQSAQT
NREASPPAERPVERKSYLAARRTRSRPSDLGSKQPSVEDSAAVGNSSSLGDVGGKTWSGE
GNGPSQAGGGGGLGEQEHELARLSLVGQSWSPNPTPYFRSEMMGLPNTMHIPGSPPQFSN
IEEIGVGSNRAKRYSSQRQRTVPEPAPPMHLGVMEGHYYEPMSYQGQIYAHGDGPAPIPP
QSMLVQPEMHMPHPGLHPHQSGGPIANPALYGGPPVSLPPPPGQPQQLLPPPFYPPPGVM
TFPYPTMYPTQQGQAQVYGGVTYYDTMQQHAMPKPSPPRRTSQPVTIKPPPPELRFASE
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgaaggaggaggcgcgcgtcccaggacagcgaggacgacgacgag
tccggttcgggttcggacagcaagaagtccggctccccgaccaccaagagccgtgtgaga
gaacccgaaccgccggaggtgacggcaacccgaccagagccgaaacccgtagtggagtcg
gagtgtgagagtgaagatggtgtaggtgaagctgtcctctcagactatgacagtgctgat
ccggaggaaaacggctcccattcagagggagtggaggaggaagaggaggcagagcagttc
agcgatgaagaagctccagcagcaccaaccgagcccaaaccgtccaccacagccgaaggc
ccggcaacagtagaggaagtcgtggatgtggaggaggtgcaggacggggtggaggaggag
gaggtagaagaggaggtagaagaggaggaggaggataagaatgaagagaaagaggcagag
ggagaggaaggaggacagagtaaagaagagagcaaagccgaggagaagggcgacctgacc
ggagagagacagagcggggacgggcaggagtctacggacgacccagagacgaaggcggga
gggatacctggacagaagctggacgacgacgaggaccggaaaaacccagcctacatcccg
aggaagggcctgttcttcgaacacgacgtcaggggacacgctcaagaggaggagaggcct
aaaggtcggaacaggaagttgtggaaggacgagggtcgctgggaccatgacaggtttagg
gaggaggagcaggcgcctaaaagccgcgaggagctcatcgccatctacggctacgacatc
aggaacggcggcggctccggagagcggccgtaccggcagcgcaggccgagacagagtttg
tctccaggcagagacaagcgctggggggacggaggagagcgacccgtccgatcctggcac
agcggaggaggaggccgaggaggagctccaccctcctccacatccccttccaatcttccc
ctcacttccaatcagcggagcagcaacgcctccagacagcctcccccccgcagcagacca
tcccacccccagcagaatcaaatgcaacatccgcctcagtcccagtacaggaataatgaa
ttaaacgcacctcagatgcaccccagagaacgaccgggccctaaagctcagtgcgagcct
acaggagacaggggagtggtcagcaggggtggacgtggtggtgggagggcgccctctgtg
ctggttgaggacattacattcagccaaggaggctctaaggaagctgaccccggggttgta
acgacgtcacagcagggtggttacccgtctgcgtctccgagacgacagcagcaggaacaa
cgagggagtggcgacatgtcttcctcttcctccgaccccccccaacagtcggcacagacc
aatcgggaagcctccccccccgcagagcggccggtggaacgtaaatcttatttggcggcc
cgcaggactcgctctcggccctccgacctgggcagtaaacagccgtctgtggaggattct
gcagccgtagggaactcctcctccctcggagacgtgggggggaagacctggtcgggggaa
ggcaacgggccgagtcaggcgggaggaggtggcgggctaggggagcaggaacatgaattg
gctcggctcagtctggtaggacagagctggagccccaacccaacgccgtacttccgctcc
gaaatgatgggcctccccaacaccatgcacatcccgggcagcccgcctcagttctccaac
atcgaggagatcggtgttggctcaaacagggccaagcgatactcgtcccaacgtcagagg
accgtgccggagccggcgccgcccatgcacctgggcgtgatggagggacactactatgaa
cccatgtcgtaccagggacaaatatatgcccacggggatggccccgcccccatcccgccg
cagagcatgctggtccagcctgagatgcacatgccccaccccggtctccatccccaccaa
tcaggcggcccgattgctaaccccgccctctatggaggcccaccagtttctctgccgccg
ccgccagggcaacctcagcagctgctgcctccgccgttttacccaccgccgggggtcatg
accttcccgtaccccaccatgtacccgactcaacagggtcaggcccaggtgtacggcggc
gtgacgtactatgacaccatgcagcagcatgccatgcccaagccctcgcccccccgccgc
acctcgcagcccgtcaccatcaagcccccccctccggagttacgcttcgcctctgagtga
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