KEGG   Trematomus bernacchii (emerald rockcod): 117492783
Entry
117492783         CDS       T09643                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL-like
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
tben  Trematomus bernacchii (emerald rockcod)
Pathway
tben03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:tben00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    117492783
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:tben01009]
    117492783
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tben03021]
    117492783
Protein phosphatases and associated proteins [BR:tben01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     117492783
Transcription machinery [BR:tben03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     117492783
    Little elongation complex (LEC)
     117492783
SSDB
Motif
Pfam: ELL Occludin_ELL Seryl_tRNA_N A_deaminase_N SWIRM
Other DBs
NCBI-GeneID: 117492783
NCBI-ProteinID: XP_033999100
LinkDB
Position
Unknown
AA seq 617 aa
MSALKENQCYGLSSGKLSNGANVSVFHVKLTDSAARAICSFQSGKGWSSRPTISFNGSKG
RISVPCSENKDDCRIFTFGVTSVARDNPNGSFDCFQQLRTGAAEELSCLGVIQKKMTVNA
TDDSYDKARQSMAQAEEETRSRGAIVIKQGGGRFQGKKVTVRAPNPALASLAKPQQSSQS
LLGNIKRRVQVTVSKPKKCASHRKSVGDVQERPLRERVTHLLALRPFKRPELILRLQRDG
LTARDKDMMDSVLMEVGQLNIRDKTFVLKDAVYKELHKDWPGYTSGDQQLLKRILVRRLF
QPQQNLLTVPEAQVSPLRDTPNSSPAHRPKPSLPEEYTDPLANKKPRISRLSCKTADDKS
RVRRSEQAAFKDVTEATGNGGQRNSLDPRKLLDSLSAACQREVEVAERLEPTPVLQEEPN
VTADSPPPNSDLPPSPLTVPDLHRHTIKRKKSKHKHSDQEKDKTRDKKRRRKDHSSEDPN
DKVSMDRIKPSDILFQSSVLQEDNDAEDYLLKYTAICSHDSRQSYKQDFNTEYSEYRDLH
ARIDGVTRQFMELDAQLKELHHGTHKYKTVRNQILQEYRKIKKSNPNYNKDKTRCEYLHN
KLAHIKKLISEYDQQQL
NT seq 1854 nt   +upstreamnt  +downstreamnt
atgtctgctctaaaggagaaccagtgttacggtttatccagcggtaaactgagcaacggc
gctaacgtctctgtttttcatgtaaaactcactgacagcgcggcaagagccatttgctcc
tttcaaagcggcaagggttggtcttctcgtcccaccatcagttttaatggcagcaaaggg
agaatctccgtcccctgctcggagaacaaagacgactgcaggatcttcacctttggcgtg
acgagcgtcgcccgtgataatcccaatggaagctttgactgcttccaacagcttcgcact
ggtgctgccgaggagctgtcatgtctcggggtgattcagaaaaagatgacagtgaacgct
acagatgactcgtacgataaggctcggcagagcatggctcaggctgaggaggagacgcgc
agccgcggggccatcgtcatcaagcaggggggggggcgcttccagggtaagaaggtgacg
gtgcgagccccgaatcccgcattggccagcctggccaaaccccaacagtcgtcccagtct
ctcctcggcaacattaagaggcgtgtccaagttaccgtgtccaagccgaagaagtgtgct
tcacacaggaagagtgttggtgacgtgcaggagaggccgctcagggagagagtcacacat
ctgctggccctgaggcctttcaagaggccggagctcatcttgaggctgcagagagacgga
ctgacagccagagacaaagacatgatggactctgtgctgatggaggttggtcagctgaac
attagagacaagacatttgttctgaaggacgctgtgtataaggaactgcacaaggactgg
ccaggctacacctcaggagaccagcagctgctgaaacgaatccttgtcaggagactattt
cagccacaacagaacctcctcaccgtcccagaggctcaggtcagtccactcagagatacc
cccaactcctccccagcgcaccgcccaaaaccctccctgccagaggaatacaccgaccct
ttggccaataagaagcccaggatatcccgcttgtcctgcaaaacagctgatgacaagtca
agagtgaggcggtcagaacaagcagcttttaaagacgtcacagaagcgacagggaatggc
gggcaaaggaactctcttgatcctcgaaagctcttagactctctgtcagcagcctgtcag
cgggaagtggaagtggccgagaggctagaaccaactccggttcttcaggaggaacccaac
gtcacagcagactcccctccacccaactctgatctccctccctctcctctgacggtgcct
gatctgcacagacacaccatcaaaaggaagaagagcaaacacaagcacagcgatcaggag
aaggataagacgagagacaagaagagaaggaggaaggatcacagctcagaggatccgaac
gataaagtgtccatggaccgcataaagcccagtgacattttgtttcaatctagtgtgctt
caagaagacaatgacgcagaagactatttattgaagtacacagccatttgcagccatgac
agcagacagagctacaagcaggacttcaacacggagtacagcgagtacagagatctccac
gctcgtattgacggagtgacgcggcagttcatggagctggacgcgcagctcaaagagcta
caccacggaacacataaatacaagacggttcgcaatcaaattctacaggagtatcgcaaa
attaaaaagtccaaccctaactacaacaaggacaagactcgctgtgaatatctacacaac
aaactggcccacatcaagaagctcatatcagagtacgaccagcagcagctctga

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