Trematomus bernacchii (emerald rockcod): 117492886
Help
Entry
117492886 CDS
T09643
Symbol
prdm1c
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117492886 (prdm1c)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117492886 (prdm1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
zf-C2H2_6
Zf-C2H2_ZNF451_C
zf-C2H2_jaz
zf-met
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451
zf-C2HE
Motif
Other DBs
NCBI-GeneID:
117492886
NCBI-ProteinID:
XP_033999197
LinkDB
All DBs
Position
Unknown
AA seq
779 aa
AA seq
DB search
MCGSSQGFTASSSQCTTAMLTSENSPQSTGVIATAMPETQDADMASWSEANFEEKCTYIV
KDHLLEEGSENKNKTRAERSLPRNLALKRCHNSTEVLGVTSKELIPQGTRFGPLVGESYT
NETLPKDPDRKYFWRVFLEGHLHHILDGLNEEQSNWMRYVNPACSVQEQNLVACQSGLNI
YFYTITPLQPGQELLVWYCPEFARRCNYPPLGRLAIDSIEPSQAQEKTTVKRGHSVSEIL
RDEPSKSLPACPRRLSSPLSQTNLSAVFPLCPRVVYPIQPHSESIHGQRYVTQPPVPSCS
PPAAKRPVLSGPSSLHFTLQHSQSPVTAKPYQKPSLPDRVHPALRHSPYPLPHYSLGLNS
ILPQSFPFYRDQMKHHFISHVLPFDSYAHIHPSLANGHKDLTLALSNTKQDLILSQNSEH
RDNKDLITVRTNYLRCPSDDLRDFRQSPSSNVHADLSLPASSSASSMATSLRRALPSLAP
GGCSPPVGMAAFSDCLPSKPTSATQRQTEDAMDLRKIKRGGHIIGYKTLSYPLTRQNGKI
RYDCNICGKIFGQLSNLKVHLRVHSGERPFRCQTCNKNFTQLAHLQKHYLVHTGEKPHEC
KVCHKRFSSTSNLKTHQRLHSGERPYLCKLCPARFTQYVHLKLHKRLHTGERPHRCPCCP
CAYLHYCSLQVHLQGFCPLSPSASHRHSPEELHRVNAEIERFDMSEAAEQLEAMAADAEM
DKGNVFDLIKKMESRTSGHHEEEEDELSMYKSAVLPHHGSPLPLHPTSIKLESGCTSEP
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggctcctctcaaggcttcacagcctcctcctctcagtgcaccacagccatgtta
acatcagaaaactcaccgcagagcacaggggtcatcgcaacagcaatgccagagacacag
gacgcagacatggcatcatggagcgaggcaaactttgaggagaagtgcacatatatcgtg
aaggaccatcttctggaggaagggtccgaaaacaagaacaagacacgagccgagagatct
ttacccagaaacctggccctgaagcgctgccacaactccacagaggtgcttggggtgacc
agtaaggagctgattcctcagggaacacgttttggccctctggtgggggaaagctacacc
aacgaaacgctaccgaaagatcccgacaggaagtacttctggagggtcttcttagagggg
catttacaccacatcctggatggtttgaacgaggagcagagcaattggatgcgttacgtc
aacccagcctgttctgtgcaggagcagaacctggtggcatgccagagcgggttaaacatc
tacttctacaccatcacacccctgcagccgggccaggagctcctggtgtggtactgtcct
gaattcgcccggcgctgtaactaccctccactgggtcgactggctattgacagtattgaa
ccaagtcaagctcaggagaagacaacagtgaaacgaggacacagtgtctctgaaatcctt
cgagacgagccttccaagtccctgcctgcctgccccagacgtctgagtagccccttgtct
cagaccaacctctcagcagtttttcccctgtgtccccgtgttgtatacccgatccagccc
cactcagaatccatccatggccaaagatatgtgactcaaccacctgtgccatcctgtagc
cctccagctgcaaaaagaccggttcttagcggtccctctagtttgcacttcacccttcag
cacagtcaaagccctgttacagccaaaccttaccaaaagccctctttacctgatcgagtc
catcctgctctgaggcattccccctatccactgcctcactactcgctcggccttaacagc
attctacctcagtcattccccttctacagagaccaaatgaaacatcacttcatatctcat
gtgctgccttttgacagctatgcacacatccacccttctctggctaacggacacaaagac
ttgacccttgcactatccaacaccaaacaagacctcattctttcacaaaacagcgagcac
agagacaacaaggacctcataaccgtaaggacaaactacctcaggtgcccttcagatgac
ctcagagatttcagacaatctccaagcagtaatgttcacgcagacctcagtttacctgca
tcatccagtgcctcatccatggccacctccctccgcagagcactgccatctcttgcgcct
ggaggatgttcaccaccagtgggtatggctgccttttcagactgcctcccttccaaaccc
acgtctgccactcagagacaaactgaggatgcaatggacctcaggaagatcaaacgagga
ggacatattatcggctacaagacgctgtcatatcccctcaccaggcagaatggaaagatc
cggtatgattgcaacatctgtggaaaaatctttgggcagctgtccaaccttaaggtccat
ctgcgagtgcacagcggggagcgtcccttcaggtgtcagacctgcaataagaacttcaca
cagctggcccacctgcagaaacactacctggttcacactggagagaagcctcatgaatgc
aaggtgtgccataagcgattcagtagcacaagcaacttaaagacccatcagcggctacac
tcaggtgagaggccgtacctgtgcaagctctgcccggcccgctttactcaatacgtacac
ctaaagctccacaaacggctccacactggtgaacgacctcacaggtgtccttgttgcccc
tgtgcctatctccactactgcagcctccaggtgcacctccaaggcttctgccctctctcc
ccctcggcctcccacagacactccccggaggagctacaccgagtcaacgcggagattgag
aggttcgacatgagcgaggcggcagagcagcttgaggccatggctgcagatgccgagatg
gacaagggaaatgtttttgacttgataaagaagatggagtctcgtacctctggccaccac
gaagaggaggaggacgagctgagcatgtacaaatctgcagttctgccacatcatggcagc
cctctacctctgcatccaaccagtatcaagctggagtcaggctgcacatcagagccctaa
DBGET
integrated database retrieval system
