Trematomus bernacchii (emerald rockcod): 117492927
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Entry
117492927 CDS
T09643
Symbol
cacna1aa
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent P/Q-type calcium channel subunit alpha-1A
KO
K04344
voltage-dependent calcium channel P/Q type alpha-1A
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04010
MAPK signaling pathway
tben04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117492927 (cacna1aa)
04020 Calcium signaling pathway
117492927 (cacna1aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117492927 (cacna1aa)
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117492927 (cacna1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Motif
Other DBs
NCBI-GeneID:
117492927
NCBI-ProteinID:
XP_033999245
LinkDB
All DBs
Position
Unknown
AA seq
2527 aa
AA seq
DB search
MARFGDEVPARYGGGPGGGGQGGRGGSRQGGPHGHVHGHGHGHGHGAPGGPGVQRVYKQS
MAQRARTMALYNPIPVRQNCFTVNRSLFIFSEDNFIRKYAKKITEWPPFEWMILATIIAN
CIVLALEQHLPVGDKTPLSERLDDTEPYFIGIFCFESGIKILALGFAFHKNSYLRNGWNV
MDFVVVCTGILSTIGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGM
LLFFAILMFAIIGLEFYMGKFHTTCYDNHTGEMREEFPCGTELPSRLCPEGTLCRRYWTG
PNYGITQFDNILFAILTVFQCITMEGWTDLLYYSNDASGSAWNWMYFIPLIIIGSFFMLN
LVLGVLSGEFAKERERVENRSEFLKLRRQQQIERELNGYLEWICKAEEVILADDDNVTAY
DGSRRRATKNHKSKAELLNPEEGEGDLAVGSPFARASLKSSKLEGSDFKRRERRLRFLIR
HAVKSQAFYWTVLCLVGLNTMCVAVVHYDQPEPLSDFLYFAELIFLAIFLTEMFIKMYGL
GKQAYLNSSFNCFDCIVICGSIFEVLWSIIQPGTSFGISVLRALRLLRIFKVTKYWKSLR
NLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFDTGTPPTNFDTFPAAIMTV
FQILTGEDWNMVMYDGIESQGGVNKGMGFSIFFIVLTLFGNYTLLNVFLAIAVDNLANAQ
ELTKDEQDEEAANTKKLALQKAKEVAEVSPMSAANLSIAANKVHSECHNATDPFLDCKEQ
QKNNKGGINKSVWEQRTKELRRQTLVTSREALYNELDTEERWKASGGREEQNNVNFARNS
RPDMKTHLDRPLVVDPHENRNNNTNKTTANNSDLCFSQHHPADELHRQTRLHEHVGQVGG
VGGGGSGTARPPLERGESSESRRSRKSEHHHHSSHVRLDATVIPGPGSEDRPARRHHHTR
SGSRGAGQSEHRKPRSHRKNAEEGEEGGGGAGKTGRHKSRGVEGGGEGGEQEGAGEGSER
RPRRNRHGNQTDGEGKRMCQHRRKECSVPNLSTTRPIQKSLPRQDSQYSEDMDNLMNTKL
VSGSTPPGDVHPNPLAHHPAAPGFGSALHLANSSTHGSLVTLDSYGSIAHHRTNSVLRVP
HPDYTALDMPIFPSTNAILQVNKNANTEPLPAKEDKDDDDDEKRGEGGPRPMPPFSSMFI
LSTTNPFRRACHYVCTLRYFEMTILLVIAMSSIALAAEDPVWPESPRNNVLRYFDYVFTG
VFTFEMLIKMVDLGLVLHQGSYFRDLWNILDFIVVSGALVAFAFTGSSKGKDISTIKSLR
VLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYLLFMFIFAVVAVQLFKGRFFYC
TDESKEFERDCRGEYLVYQGVNEVKAQKREWKKYDFHYDNVAWALLTLFTVSTGEGWPQV
LKHSVDATYENQGPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEDY
SLEKNERACIDFAINARPLTRHMPKNKLSFQYRMWEFVVSPPFEYTIMAMIALNTVVLMM
KYDGASDTYEAVLANLNIVFTSLFSMECVLKIIAFGVLNYFKDAWNIFDCVTVLGSVTDI
LVTELGMNNFINLSFLRLFRAARLIKLLRQGETIRILLWTFVQSFKALPYVCLLIAMLFF
IYAIIGMQLFGNIAIDEEGESAINPHNNFQTFVMALMLLFRSATGEAWHEIMLSCLGSKE
CDPLTGNPEPECGSQFAYLYFVSFIFFCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLD
EYVRIWAEYDPAACGRIHYKDMYSLLRVIDPPLGLGKKCPHRVACKRLLRMDLPVADDNT
VHFNSTLMALIRTALDIKIAKGAEGGVDKHQMDAELRKEMMAIWPNLSQKTLDLLVTPHK
SATDLTVGKIYAAMMIMEYYRQSKIKRSQALRDEQNRTPLLFQRVEPPSPGQDGGPGLNN
ALPPPETTETVNGLTVQGGIPASQSWVTARAQEMSQKAGSWSPEGHPEDSLGSMSNSQTV
EMREMGQDGYSDTEHFPPMEGHGRAASMPRLPGDNQTINDTSPMKRSASSLGHSRSGRGH
RDKGDDYNMECVPEEERTSRHGHRRKDRGHRASERSLCPHTTEADTGLGTDLSTTTQSGD
LTAKDKDRDRDRGRSKDRKHHHHHHHHHGSVDKERYVAERGGEYGHRHSRERELEDRDRE
RERDRRWSRSPSEGREGHEGHEGREGRDGLTHRQGSSSVSGSPVPSTSGTSTPRRGRRQL
PQTPATPRPHVTYSPVVRKAMPTAPGGPQARPPAPAPRHFSPEPPQGQGPPPSVLPPAHH
GISRQGHHPPPRWGDTGGGGGSMEGDGCFYNQDYDPHHEPPAYEQNPMQGGNPHPHPQPH
ALANHPLPPPPQQQQHNPHPLPPPQPHPVNNPHPHPPPHQQPSRTSPRTVGHAPPPTTAL
TGPVQGQMQPAVQRRLPNGYRSSSPSKHIHGPPHTGPHKVPPPPGHPKGPRKGLHEPYSE
KEDDDWC
NT seq
7584 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggtttggagatgaggtaccggccaggtatggcggagggcccggcggagggggc
cagggtggccgcggtggtagcaggcaaggaggaccccacggacacgttcatggacacgga
cacggccatggccacggtgcacccggagggcccggggtccagagagtgtacaagcagtct
atggcgcagagagcccggactatggccctctataaccccatccccgtgcgccagaactgt
ttcactgtcaaccgctcgctgttcattttcagtgaggataacttcatcagaaaatacgcc
aaaaagatcaccgaatggcctccatttgagtggatgattctcgccaccatcattgccaac
tgcattgtcttggctctggagcaacatttgcctgttggggacaagacgccgctgtctgag
cgcctggatgatacagagccgtacttcattgggatcttctgttttgagtctggaataaag
atcctggcgctcggtttcgccttccacaagaactcctacctgaggaatggttggaacgtc
atggactttgtggtggtgtgcacagggatcctgtccactataggctcagatttcgacttg
cggaccctcagggctgtgcgagtattgaggcccctcaaactggtgtccggtattcccagc
ttacaggtggtgctcaaatccatcatgaaggccatgattcctctgctgcagattggcatg
cttcttttcttcgccatcctcatgttcgccatcatcggcctggagttctacatgggcaaa
ttccacacaacatgctatgacaatcacacaggtgagatgagagaagagtttccatgtggg
acagagcttccgtcgcggctgtgtccagagggcaccttgtgtcgaaggtactggacggga
ccaaactacggcatcacccagtttgacaacatcctgtttgctatcctcaccgtcttccag
tgtatcaccatggagggctggactgacctgctctactatagcaacgatgcctcagggagt
gcatggaactggatgtacttcatccccctcatcatcatcggctccttcttcatgctcaac
ctggtgctgggtgtgttgtcaggggagtttgccaaagagagagagcgtgtggagaacagg
agtgagttcctgaagctcagaagacagcagcagatagaaagggaactcaacggatatctg
gagtggatctgcaaagctgaggaggtcatcttggcggatgatgacaatgtcacggcttat
gatggttctcgtagaagagccacaaagaaccataagagcaaagctgagctgctgaaccca
gaggaaggggagggagacctggcagtggggtcaccgtttgcccgggccagcttgaagagc
tccaagctggaaggatcagatttcaagcggcgagagcgacggctacgcttcctcatccga
cacgccgtcaagtcgcaggccttctactggaccgtgctgtgcttggtcgggctcaacact
atgtgtgtggctgtagtgcactacgaccagccggagcctctgtcagattttttatatttt
gctgaattaatcttcctggcgatattcttgacagagatgtttataaagatgtacggcctt
ggcaaacaggcctacctcaactcctccttcaattgcttcgactgcattgtgatatgtggt
agtatatttgaagtgctgtggtccatcatccagccgggcacgtcgtttggcatcagcgtg
cttcgagctctcaggttattgaggattttcaaagtcaccaagtactggaaatctttgcgc
aatcttgtcgtctcactgctcaactctatgaagtccatcatcagcttgctcttcctgctc
ttcctcttcatagttgtcttcgccctgctgggcatgcagctcttcggaggacagtttaat
tttgacactggcactcctccgaccaactttgacaccttccccgcagcaataatgacggtg
ttccagatcctgaccggtgaggactggaacatggtgatgtacgatggcatcgagtctcag
ggcggagtcaacaagggcatgggcttctccatcttcttcatcgtgctcacacttttcggc
aactacactctgctgaatgtgttcttggccatcgctgtggacaatttagccaacgcacag
gaactgaccaaggacgaacaggacgaagaggcggctaacactaagaagctggccctgcag
aaagccaaggaggtggctgaagtcagcccaatgtctgccgccaacctctccatcgcagcc
aacaaagtacacagtgagtgtcacaacgctaccgacccctttctggactgtaaggagcag
cagaagaacaacaaggggggaatcaacaagtcggtgtgggaacaacgcaccaaggagctg
aggaggcagacgctggtgaccagccgcgaggctctctacaacgagctggacactgaggag
cgctggaaggcaagcggagggagggaggagcaaaacaatgtgaacttcgcacgtaactcc
cgcccagacatgaagacccacctggatcgtccgctggttgtcgacccccatgagaaccgc
aacaacaacactaacaagaccacagcaaacaattcagacctctgcttcagccagcaccat
cctgccgacgagctccacagacagacacgcctccacgaacacgttggccaggtgggagga
gtcggaggagggggctctgggacggcgaggcctcccctggagcgcggcgagtcctcggag
agcaggcgcagtcgtaaaagcgagcatcaccaccactcctctcatgtccgactggatgcc
acggtgattcccgggcccggctcggaggacaggcctgcccggcgccatcaccacacccgg
agcggcagtcgaggcgcgggacagtcggaacacaggaagcccaggtcacatcggaaaaat
gcagaggagggcgaggagggtggcggaggagcggggaaaacagggagacataagagcaga
ggggtggagggaggtggagaaggaggagagcaggaaggagctggggaaggcagtgagagg
aggccaagaagaaatcgccatggaaaccagacggacggcgaggggaagaggatgtgccag
cacagaaggaaggagtgcagtgtccctaacctctccaccacgcggcccattcagaagagc
ctcccccggcaggacagccagtacagcgaggacatggacaatctcatgaacaccaaactg
gtctccggctccaccccacccggcgatgttcaccctaaccccctcgcccaccaccctgcg
gccccaggctttggatccgccctccatcttgcaaacagtagcactcacgggagtttggtg
acattagatagctacgggagcatcgcccatcatcgtaccaacagtgtcctcagggtgcct
caccctgactacacagctctagacatgcctatttttccatccaccaatgccatactgcaa
gtcaataagaatgccaacacggagccactgccagcgaaagaggataaggacgatgatgat
gatgagaagagaggtgaaggaggacccaggcccatgcctcctttcagctccatgttcatc
ctgtccaccaccaacccgtttcggcgtgcctgtcactacgtttgcaccctgcgatatttt
gagatgaccatcctgctggtcattgccatgagcagcatcgcgctggctgctgaagacccc
gtgtggcccgaatccccccgcaacaatgtcctacgctattttgactacgtcttcacagga
gtattcacatttgagatgctgattaagatggtggatttgggcctggtcttacaccagggc
tcttatttccgggacttgtggaacatccttgactttatagtggttagtggtgctctggtg
gccttcgccttcacgggaagcagtaagggaaaagacatcagcaccatcaagtctctgagg
gtgctgagagtgttacgacctctgaagaccatcaaacgtcttcccaaactcaaggctgtc
tttgactgtgtggtgaactctctgaagaatgtgctcaacatcctgattgtctacttactc
ttcatgttcatctttgctgtggtggccgtgcagctgttcaagggacgcttcttttactgc
actgacgaatccaaagagtttgagcgcgattgcaggggcgaatatctggtgtatcaaggc
gttaacgaagtgaaggcgcagaagcgggagtggaagaagtacgatttccactacgacaac
gtggcttgggccctactcaccctcttcaccgtgtctaccggagaggggtggccgcaggtg
ctgaaacattcagtggatgcgacttatgagaaccagggcccgagcccggggtaccggatg
gaaatgtccatcttttacgtggtgtacttcgtggtcttccccttcttcttcgtcaacata
ttcgtggctctaatcatcatcactttccaagagcaaggagataagatgatggaggactat
agtttagaaaaaaatgagagagcctgtatagattttgccatcaacgccagacctctgaca
cgccacatgcctaagaacaagctgagcttccaatacagaatgtgggagtttgtggtgtcg
ccgccatttgaatacactataatggcaatgatcgcgctcaacaccgtcgtgctaatgatg
aagtatgatggagcttctgatacatatgaagctgtgttagccaacctgaacatagtgttt
acctcgctcttctccatggagtgtgttctcaagattatcgcctttggagtactgaattat
ttcaaagatgcctggaatatttttgactgtgtcacagttctgggcagcgttaccgacatc
ctggttacggagcttgggatgaataatttcatcaacctgagtttcctgaggctgttcagg
gcagctcgtctcatcaagctgctgaggcagggagaaaccattcgcatcctgctctggacc
ttcgttcagtccttcaaggcgctgccttatgtctgcctcctcatcgccatgctgttcttc
atttacgccatcattggcatgcagctgtttgggaatatcgctattgatgaagaaggagag
agtgccatcaacccgcacaacaacttccagaccttcgtaatggctctcatgctgctcttc
aggagtgcgacgggggaggcgtggcatgagatcatgctgtcgtgtctgggcagcaaggag
tgcgaccccctgacaggaaatccagagccagagtgtggcagccagtttgcttacctctac
tttgtctctttcatcttcttctgttcattcttgatgctgaatctgtttgtcgccgtcatc
atggacaactttgagtacctgacgcgagattcctccattctgggacctcaccacctggat
gagtatgtcaggatatgggccgagtatgatcctgctgcctgcgggcgcattcattataag
gacatgtacagtttattgcgagttatcgacccgcctctcggcttaggaaagaaatgcccc
catagggtggcctgcaagaggctgctccgtatggatctgcctgttgccgatgacaacacg
gtccacttcaactccactctcatggccttgatccgcacggcactggacatcaagatcgcc
aagggtgcagaaggtggggttgacaagcaccagatggacgccgagctgaggaaagagatg
atggcgatctggcccaacctctcgcagaagactctagatttgctggttacgccgcacaag
tcagccacagacctgacagttgggaaaatctatgctgccatgatgatcatggagtactac
cggcagagcaagatcaagcgctcccaggcacttcgtgatgagcagaatcgaacgccatta
ctgtttcagcgcgtggagccaccttccccaggccaggatgggggtccgggacttaacaac
gccctccctccacctgagacgacagagacggtcaacggcctgacggtacagggggggatc
ccggcgagccaatcgtgggtgacggctcgtgctcaggagatgtcccaaaaagcaggcagc
tggagccctgagggacaccctgaggacagcctggggagcatgagcaactctcagacggta
gagatgagagagatggggcaggatggttactcggatactgagcactttccaccaatggaa
ggccatggcagggccgcttccatgccccgcctcccaggcgacaaccaaaccataaatgac
accagtcccatgaagcgctcggcctcgtcgctgggccacagcaggtccggccggggtcac
agagacaaaggagacgactacaacatggagtgtgtgcctgaggaggagaggacttcccgg
catggacaccggcgaaaagaccggggtcaccgggcctccgagaggtcgctctgtccgcat
acaacagaggctgacacaggcctgggcacggacctgagcacgaccacgcagtccggggac
ctcacggccaaagacaaggaccgcgacagagaccgcggccggtccaaagaccgtaagcac
caccaccaccatcaccaccaccacggctccgtggacaaggagcgctatgtagcagagcga
gggggcgagtacggacacaggcactcccgcgaaagagagcttgaggacagggacagggag
agagagagggaccggcgctggtctcgatcgcccagcgagggtcgtgagggtcacgagggt
cacgagggtcgcgagggtcgggacggcttgacgcacagacagggcagtagttcggtcagt
ggaagtcccgtcccctctacgtcggggaccagtacgccacgtcgcggccgccgacagttg
cctcagacccccgcaaccccccggcctcatgtcacctactcccctgtggtccgtaaggcc
atgcccacagcacctggggggccccaggcccgcccccccgctcctgcccctcggcacttt
tctcccgagcctcctcaaggccagggcccccccccctctgtcctccctccagcccaccat
ggcatatcccgccagggtcatcaccccccgcctcgctggggggacacgggtggaggaggg
ggctccatggaaggggacggctgcttctacaaccaggactatgacccccaccatgaaccc
cctgcttacgagcagaaccccatgcagggtggcaacccgcacccccaccctcaacctcat
gccctggccaaccacccactgccgcctcccccacaacaacagcaacataacccccatcca
ctgcctccaccccagccccacccagtaaacaacccccaccctcatcccccgccccaccag
cagcccagtcgcacctcccccaggactgtcggccatgcacccccccccaccacggccctg
acggggcctgtgcagggccagatgcagcctgctgtccagcggcgcctacccaacggatac
cgctcttcatctccgtccaaacatatccatggacccccacacacggggcctcacaaggtc
ccccctccacccgggcatcccaaaggtccccgcaagggcctgcatgaaccctacagtgag
aaggaggacgacgactggtgctag
DBGET
integrated database retrieval system
