Trematomus bernacchii (emerald rockcod): 117493073
Help
Entry
117493073 CDS
T09643
Symbol
cacna1ha
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04010
MAPK signaling pathway
tben04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117493073 (cacna1ha)
04020 Calcium signaling pathway
117493073 (cacna1ha)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117493073 (cacna1ha)
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117493073 (cacna1ha)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
GRP
Motif
Other DBs
NCBI-GeneID:
117493073
NCBI-ProteinID:
XP_033999354
LinkDB
All DBs
Position
Unknown
AA seq
2467 aa
AA seq
DB search
MTDGEGRVRFQFAESPEGQVREGVQEEVRLAIPLAYRNDAPGHDADPGGGHDEQEEDEEE
VDTRRSRTGRGDGAEWSPEVQEDQEPEMEVGPRLGVRIRTPIRDPDCVSEEEEVQPYPVL
APVAFLCLKQTTRPRNWCLRVVCNPWFEHFSMLVILLNCVTLGMFQPCEDVACQSEWCGI
LQVLDDCIFAFFAVEMVIKMVALGIFGPNCYLGDKWNQLDFVIVMAGVMEYSLDGHNASL
SAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGL
LRNRCFLGEDIRTMYNLSISPYYMTEEGEESPLICSAPRENGMLRCHDLPPNTEGGAECS
LAASQHSSAMMGMGGASVNGCVNWNQYYNVCRPGELNPHKGAVNFDNIGYAWIAIFQVIT
LEGWVDIMYYVMDAHSFYNFVYFILLIIVGSFFMINLCLVVIATQFSETKQRENALMREQ
RARYMSNDSTLASYSEPGSCYEEMLRYISHLYRKFSRRLQRIYSGWHSKRRKKVNPNGGG
AGSNGGGNGHGHGSSRGGGGPGNALWLRPIHNLLQHHQHQHCRLSNGGQHTTITVATAEH
TDGEGGEELEMKSLPVRRGSTNGNSSGGPSVITQGMGALLGRLNGGMNYPTILPSFVCSY
SSKTPPPHSQHRGHSPEHHPQNHPASEHTETLNKLYQLMGQHSRQRLLYQLAGVVPSPLL
LELLSCPQCARSLETLELELGDLEGGRGEPDGLHDFPQVRLCGGALTMMGGDLRSGRGRS
RRRGVREYKNGVVGAWVGFRDKLKRIVESKYFNRGIMIAILVNTLSMGIEYHKQPEELTD
VLEISNIVFTSMFVLEMGFMLLAFGLFGYIKNPYNIFDSVIVIISVWEIIGQADGGLSVL
RTFRLLRVLKLVRFLPALRRQLVVLMKTMDNVATFCMLLMLFIFTFSILGMHLFGCKFSH
EIENGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPWAALYFVALMTFGN
YVLFNLLVAILVEGFQAEGDANRSESDDEKKSDNFDDDEKVSQLRDSELKMYSLMMTANG
HVDPRGSMAPPIIMRTAATPMPTPKSSLGPESVLGDDLMYREGVPQYADAGLGFSDSGSV
HADSRRGSVTSMDPIAYDQHSLSLSSPGRRSPLPPRWGSRRSSWNSLGRAPSLKRRDTSG
ERESLLSGKGGEEEDGGEDKGEAGGNNRLRPETLELLQASTLCPSITAEYADCNGRTLNY
DPPLVNPDPKEDLSPDDEIDEDSSFWLWLTKELQNMKPSWCKEHDDWNLYVFSPESKLRR
WCKSVISHKLFDHVVLIFIFLNCITIALERPGISIESKERKFLSVSNYVFTVIFLAEMAI
KVLALGFCFGKQTYLKSSWNVLDGLLVFVSLVDILVSLAYTGGNRILGILRVLRLLRTLR
PLRVISRAPGLKLVVETLITSLRPIGNIVLICCAFFIVFGILGVQLFKGKFYHCEGLDTK
NVTNKSDCLQANYRWIRRKYNFDNLVQALMSLFVLSCKDGWVNIMYDGLDAVGVDQQPVR
NHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQDQEEEETRLREEKRVKMIEKKR
RKAKQRPYYADYSPVRLYIHTLCTSHYLDLFITFIICINVFTMSIEHYNQPKYLEEVLKY
CNYVFTCIFVVEALLKLSAFGIQRFFKDRWNQLDIAIVALSIVGIALEELKMSSALPINP
TIIRIMRVLRIARVLKLLKMATGMRSLLDTVMQALPQVGNLGLLFMLLFFIYAALGVELF
GKLECTEDNPCEGLSRHATFANFGMAFLTLFRVSTGDNWNGIMKDTLRECHPEELNCLTY
LPLISPIYFVTFVLMAQFVLVNVVVAVLMKHLEESNKEAKEDAEMDAEIALEMAMERQRK
LSTTSHNSSAAGTYVGPCPNSPGEEEEEEVQYIDPDLLSSRKMSVSRMHSLPNDSYMFRP
VRPASAPFPLEEVELSPQPQHSASVTSVHSQPCEGRTLLQVPDASPVHPRSPPTLTLPRI
APPTPSPSPRALRRQVAVKVDSVESQSYELQERPHPAPLPPLSSHPSSPSPLPPPPPSSP
SLLPPCSPSAVPLPPPSPLHPLLSSPLPPPPSSPSLLLPPPPSPRLRRPRQPSGASLCDP
ADEEVCHITSSARQRWREEEGGGGKVGRSHSLSPYVDSSSPPPPPLPPSSSRSALRLLGA
GLADFRKGSSADNHGFTDEPPSLSAGYPDDHRRHSIEVCLPQAAITGDDRDFTPRSGPAF
PVRVQSVGGGHRKKKMSPPCISIHPPSEREHPQIASPPKLSDCSMMLRRRTPSYDLSPMH
TPLTPIHVPLQTHSPTHTLTLSRASTPTHTYTPSHASTPSHIPISPNIFIQPHAPLVPMS
FSQTLSPAARQDYIPLPQFTFDQPQSRYMSGLSPGLSDTDTATCSSPFDNRLGSGAGFSA
KNRRTAQ
NT seq
7404 nt
NT seq
+upstream
nt +downstream
nt
atgactgatggcgaggggagagtgcgctttcagttcgcagagagcccggaggggcaggtg
cgggagggggttcaggaggaggtgaggctcgccatacctttggcctacaggaacgacgcc
cctggtcatgatgctgaccccggaggaggccacgatgagcaagaggaggacgaggaggag
gtggatacgaggaggagtcggactggtcgtggcgatggagcggaatggagtcctgaggtg
caggaggaccaggaaccggagatggaagttggaccaagattgggagttcgcattaggact
cctattcgggatccagactgtgtctccgaggaggaggaagttcagccgtaccccgtcctg
gcccccgtggccttcctctgcctaaagcaaacaacaaggcctcgcaactggtgtcttcgt
gttgtctgtaacccgtggttcgagcacttctccatgctggtgattctgctcaactgtgtg
actctggggatgttccagccctgtgaagacgtcgcctgccaatctgagtggtgcggcatc
ctgcaggtgttggacgactgtatttttgctttcttcgctgtggaaatggtcatcaagatg
gtggccctgggaatatttggacccaattgttaccttggcgacaagtggaaccagcttgac
tttgtcatcgtcatggcgggggtgatggagtattctctggacggccataacgccagtctg
tcagccatccgtactgtccgagtgctcaggccactgcgggccatcaacagagtaccaagc
atgaggatcctggtgacgctgctgttggacaccctgcccatgttgggaaatgtccttctc
ctctgcttctttgtctttttcatctttggcattgtgggagtccagctgtgggcggggcta
ctgcgcaaccgctgcttcctgggagaggacatcagaacaatgtacaacctgtccatcagt
ccctactacatgacggaggagggtgaggagagcccgttgatctgctcggccccccgagag
aacgggatgctgcgctgccacgatctgccgcccaacacagagggcggggccgagtgctca
ttggccgcttcccaacacagttcagcaatgatgggaatgggcggggccagtgtgaacggg
tgtgttaactggaaccagtactacaatgtgtgtcgccccggggagttaaaccctcacaag
ggagccgtcaactttgacaatatcggctacgcctggatagccatattccaggtcatcaca
ctggaaggatgggtagatatcatgtactatgtcatggacgctcactccttctacaatttt
gtatattttatactgctcattatcgtgggctctttcttcatgatcaacttgtgcctcgtg
gtcatcgccacccagttctcggagacgaagcagagggagaacgccctgatgagggaacag
cgtgctcgctacatgtccaacgactccactctcgccagctacagcgaaccaggctcgtgc
tacgaggagatgctacgctacatcagccacctttatcgcaagttctcacgcaggctgcag
aggatatactccgggtggcacagtaaaaggcgtaaaaaggtgaaccctaacggcggcggt
gcgggcagtaacgggggggggaacggacacggccacggctccagcagagggggcgggggt
ccggggaacgctctgtggctcagacccatccacaacctcctgcagcaccatcagcaccag
cactgtcgcctcagcaacggggggcagcacaccaccatcaccgtggcgaccgccgagcac
acggacggagaaggaggggaggagcttgagatgaagtcgcttcctgtgcggagaggaagt
acaaacgggaatagcagcggggggccgtcggtcatcacgcaggggatgggggcgttgctg
gggcgactgaacgggggcatgaactaccccaccatactgccctcgtttgtgtgcagctac
agcagcaagaccccgcccccccactcccagcaccggggccacagcccggagcatcacccc
caaaaccacccggcgtctgaacacacagagacactgaacaagctctaccagctcatggga
cagcacagtcgccagcggctgctgtaccagctggcgggcgtggtgcccagccctctgctg
ctggagctgctcagctgccctcagtgcgcccgcagcctggagaccctggagctggagctg
ggagacctggagggaggcaggggtgagccggacggactgcacgacttcccccaggtcaga
ctgtgcgggggtgcactgacgatgatggggggagatctgagaagcggtcgaggtcggagc
agacggcgaggggtcagggagtataaaaacggagtggtcggggcctgggtcggcttcagg
gacaaactgaagaggatcgtggaaagtaaatacttcaaccgagggatcatgatcgccatc
ctcgtcaataccctcagcatggggatagagtaccataagcagcccgaggagttgactgat
gttttggagatcagtaacatcgtgttcaccagcatgttcgtcctggagatgggtttcatg
ctgctggcttttggcttgttcggatacatcaagaacccatacaacatattcgacagcgtc
atcgtgatcatcagtgtgtgggagataatcggtcaagcagacggggggttgtccgtcctg
cggacatttcgtctgctgcgggttctgaagctggtccgcttcctgcccgccctgaggaga
cagctggtggtgctgatgaagaccatggacaacgtggccaccttctgcatgctgctgatg
ctcttcatcttcactttcagtatactgggcatgcatctgttcggctgtaagttcagtcat
gagatagagaacggagacaccgtccccgaccgcaagaactttgactctctgctgtgggcc
atcgtcaccgtgttccagattctcacccaggaggactggaacgtggtgctgtataacggc
atggcctccacctctccatgggcggcgctctactttgtcgctctcatgacatttggaaac
tacgtgctcttcaacctgctcgtggccatcttggttgagggcttccaggccgagggtgat
gctaatcggtcggagtcggacgatgagaagaaatcagataacttcgatgatgacgagaag
gtatcccagctcagagactctgagcttaaaatgtactctctgatgatgacagccaacggt
catgttgaccctcgcggctccatggctcctccaataatcatgcgcacagcagccacgccc
atgcccactcccaagagctccctgggacccgagtctgtcctcggggacgacctcatgtac
agagagggggtgcctcagtatgccgatgcaggactgggcttttcagactcaggaagtgtt
catgcagactctcgccgtggaagcgtcacctccatggaccccatagcctacgaccagcat
tctctgagcctctcgagtcccggccggcgctcccctcttcctccccgctgggggagccgt
cgctccagctggaacagtttaggaagagcgccgagcctcaagcggcgagacaccagcggc
gagagggagagcctgctgtccgggaaggggggggaggaggaagatggcggggaggacaag
ggggaggccgggggaaacaacagactgcggccggagaccctggagctactgcaggcgtcc
actctctgcccctccatcacagccgagtacgcagactgcaacgggaggaccttgaactac
gacccccccctcgtgaaccccgaccccaaggaagacctctcgcctgatgatgaaatagat
gaggatagttctttctggctctggctcacaaaagagcttcaaaacatgaagcccagctgg
tgcaaagagcatgacgactggaacctgtatgtgttctctccagagagcaaattacgtcgc
tggtgcaaaagtgtgatctctcacaaattgttcgaccatgtggttctgattttcatcttc
ctcaactgcatcaccattgccctggaaaggcctggtataagtattgaaagcaaggagcga
aagtttctgagtgtgtccaactacgttttcactgtgatcttcctggcagagatggccata
aaggttttagcgctgggtttctgcttcgggaagcagacgtacctcaagtccagctggaac
gttctggatggtttgttggtgtttgtgtctctggtggacatcctggtctctctggcctac
actggaggaaacaggatcctgggcatcctccgagtcctacgcctgctccgaacactacgc
ccactgagggtgatcagccgagctccggggctgaagttggttgtggagacgctcatcacc
tcgctcagacccatcgggaacattgtcctcatctgctgcgccttcttcattgtctttggc
atcttgggggtgcagctgttcaaaggcaagttctaccactgtgaaggtctggacacaaag
aatgtcaccaacaagtccgactgtctgcaggccaactaccgctggatcagaaggaagtac
aactttgacaacctggttcaggctctgatgtctttgttcgtgctgtcctgtaaggacggc
tgggtcaacatcatgtatgacgggctggatgcagtgggagtggaccaacagcctgttagg
aaccacaacccctggatgctgctctatttcatctccttcctgctcatcgtcagcttcttc
gtgctcaacatgtttgtcggcgtggtggtggagaacttccacaagtgccgtcaggaccag
gaggaggaggagactcgcttacgggaggagaagagggtcaaaatgatagaaaaaaagcgc
aggaaagccaagcagaggccgtactatgcggactactcccccgtgcgtctgtacatccac
acgctgtgcaccagccactacctggacctcttcatcaccttcatcatctgcatcaacgtc
ttcaccatgagcatcgagcactacaatcagccaaagtatttagaggaggttctgaagtac
tgtaactacgtgttcacctgcatcttcgtcgtcgaggccctgctcaaactttcggcattc
ggcattcaaaggttcttcaaagacaggtggaatcagctggatatagctatagtggcgctg
tccatcgtgggcatcgcgctggaggagctgaagatgagctcagcgctgcccataaatcct
accatcatcagaatcatgagagtactcaggatagcacgagtgctgaagctcctgaagatg
gccacagggatgagatctctgctggacaccgtcatgcaggcgctgccgcaggtgggaaat
ctcggtctcctcttcatgctgctgttcttcatctacgctgcgctgggagtggagctcttt
ggcaaactggagtgcactgaggacaacccgtgtgagggtctgagtcgacacgccaccttt
gcgaactttgggatggccttcctcactctgtttcgagtttccacaggagacaactggaat
gggattatgaaagacacgttgagggaatgtcatccagaggaactaaactgccttacctac
ctgcctttgatctctccgatctactttgtcacttttgtgctgatggcgcagtttgtgctg
gtcaatgtggtggtggctgttctgatgaaacatctggaggaaagcaacaaggaagctaaa
gaggacgcagagatggatgcagagatcgccttggagatggccatggagaggcaacgcaaa
ttaagcacaacttcccacaacagctcagcggcaggaacctacgttgggccgtgtccaaat
tcacctggagaggaggaagaggaggaggtgcagtacatcgacccggacctgctgtcgtca
aggaagatgtctgtatccaggatgcactctctgcctaacgacagctacatgttcagaccc
gtgcggcccgccagcgcccccttccctctggaggaggtagagctcagcccccagccccag
cattcagcctcggtgacgtcggtccactcccagccgtgtgagggtcgcactctgctgcag
gtaccggacgcctcccccgttcaccctcggtcacctcctacccttacccttccccgcatc
gcccctcccacgcccagcccctccccacgggccctgcgcagacaggtggcagtgaaagtg
gattctgtggagtcccagagttatgagctacaggagagaccccaccctgctcccctgcct
cccctctcttctcacccgtcctccccgtctcccctacctcctcctcctccctcctctccc
tcacttcttccaccttgctccccttcagccgtccccctccctcccccctctcctcttcac
cctctcctgtcctcccctctccctcctccgccgtcttccccctcgctcctgctccctccg
cccccctccccccgcctgcggagaccccggcagccctcgggcgcctccctctgcgacccg
gcggacgaggaggtgtgtcacatcaccagctccgcccgccagaggtggagggaggaggag
ggaggggggggtaaggtgggacgcagccactccctctctccttacgtcgactcctcctca
cccccgccccccccgctgcctccctcctcctccaggagcgcgctccgcctcctcggggcg
gggctggcggacttcaggaaggggtcgagcgcggacaaccacggcttcacggacgagccg
ccatctttgtcggccggttaccccgacgaccaccgccgccactccattgaggtctgcctc
ccgcaggccgccatcaccggggacgaccgcgacttcaccccccggtccggtccggcgttc
cccgtgagggtgcagtcggtcgggggcggccacaggaagaagaagatgagtcccccttgt
atatccatccacccgccttcagagagggaacacccccaaatcgcctcaccccctaaactg
tctgactgcagcatgatgttgagacgcaggacgccttcgtacgacttgtccccgatgcac
acccccctcacacccatccacgtgccgctgcaaacacactcgccaacacacacactgact
ctgtcccgggcgtccactcccacacacacctacaccccgtctcacgcctccacgccctca
cacatccccatcagccccaacatcttcatccagccgcacgcacctctcgtccccatgtct
ttctcgcagaccctgtcccccgctgcgaggcaggactacatccccctcccccagttcacc
ttcgaccaaccgcagtccagatacatgagcggcctgtctcccggcctgtcagacaccgac
acggccacatgctcctcccccttcgacaacagactggggagcggtgcgggattcagtgca
aagaatcggaggaccgcccaatga
DBGET
integrated database retrieval system
