Trematomus bernacchii (emerald rockcod): 117493201
Help
Entry
117493201 CDS
T09643
Symbol
ciita
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tben01001
]
117493201 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tben04054
]
117493201 (ciita)
Enzymes [BR:
tben01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
117493201 (ciita)
Protein kinases [BR:
tben01001
]
Serine/threonine kinases: Other
TAF1 family
117493201 (ciita)
Pattern recognition receptors [BR:
tben04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117493201 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
LRR_8
AAA_16
nSTAND_NTPase5
nSTAND3
AAA_22
NB-ARC
DNAG_N
TsaE
PFF1_TM
Roc
Motif
Other DBs
NCBI-GeneID:
117493201
NCBI-ProteinID:
XP_033999542
LinkDB
All DBs
Position
Unknown
AA seq
1634 aa
AA seq
DB search
MAQFEEVLDRVQEALTRSSPAEIRALFQRLVEDQIISEAYGKSLGLFQLFERMAPAACKP
KSDLMSSQGSTSHWTLNQGQLSQVRKCDPYQTGLEFEPSVAEHDCSGGPSPTIDPLYKHQ
GNNPKIIQELGGGPVMDKHYLNHRLSSTSIISDYQCGFRSDNRMKELLRGAERMQKPLSE
NEIIDEGNLEDEKEWLEQVEEAARRIAVPLWQHWDRGRRILLPLVPGMTAGCATGENTTK
NREAQCHVFNMEEETELAIACRTLDLYCDSFNCTEAVSRFTLDNEGATGTAESPYFSTYD
SVATTDLNQFFAYETGREVSPDVDVCRAAERSTKNLLCSMGDGQWGMDTGFTEDITHVFS
PCTLTDTHTDAQDHSFYSNTDQSMTLGIFNDAENVCNTNTCMTDDTRDLHWNKEDEEGVD
SHCGAKMQEMEQDPFLCPFDLADDLSEILTDHFLGRLVDPNLDTEGFFGDPLFNCEEELS
TCTDLPMMTEPFPDIQQQGEEDKTTGKTKRRSKRPRAPRIQQCPDDTPSRPKRQRAAARP
KTKVVQAELSITQATGSEPSSAETAGLSTTPPRILHLHPSIQFITIPDTPSCQVVRTLRL
SPSVITLPITNTAATPTYIFVSTGSPQFKPQVPPLSPTNGEVAPVQMSSSPRGSLSDTAS
KSLTHPCASPLSPGNEPSTCKESPLPQCPTVLDIPQDVKDYIQDAKAHMSQACQVMEAGL
SLTSHYVDVPVSQREILRSGKNINKALDKEIVIMGDTDRQKSLLGRSQIFERSNGDKPKR
YILLLGNAGMGKTTLIRRLCLDWSTDCIPQFDFVFLLDSKALSLTDATFSLQTLLLNLSS
FAPSCKDSNAVYAQILAAPKRVLVIFDGFCELRDYEILLQTQEKDLVTSLQKDSKAQTFT
VKQLYSAILQRVLLPGCTLLLSTRTRGTASQLLRRTDSLLEVCGFTPTDVQIYQSQYFTD
PDLRVSALDCFKNCSYLHLLCWNPGLCRLVCLVLEQCKSLEVLPRTLTELCHQVLRMKVE
KDSKDTNSQAETPSEISEKSVEETQTKSSSSSQMKRRNKNTRTHRTRASKKQEKEKDDKD
GEEMKSNGWEVVKTQERELLAQLSSLAWEGIKANSSIVPKGRTISAKLKAFGQRTGLLLS
YNLGTRQVVSSCESEDRRKTGTRETGVKRGSKGRTETENADASDDHILMWGNPFLQSYLA
GVHLSLSRTITDRAFLQTLPFQSGQKGRRRPQREELDLTQRFAVGLLFYNRRELQRFHSY
TETTFRDMVASKQALVTKHLEGLSHDDLSPAQVLEACRYVYEASSSHGDGSRDSGSQRLV
AHLAENLPEVLTFHGVPFKPSDVFAVQNVLDQGGAGGRRFCLNLEDSGIQISGLRALLGL
NNINTYRACIADVITLWEQLEQSGEEALLQVTVSKFMVHPLKATQVCHIEHLAKLVNIHV
HKRLSDSSSQSDSILAEGVPAVKALHKLELELGPEKGPLVLPKLWELLPGLHNLQHLDLE
NSTIGDKGAEELADTLVSLGSLEILNLSQNCIGDQGVRKLATVLRDLPKLHCLSLYSNVI
CDEGAETLAAVLPHMASLTDLDVKYNKLTSVGAQSLGASLRNCRKIKTLRMWNQCIPYGV
FERLQQQDNRIQWQ
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atggcccagttcgaggaggttctggacagagtgcaggaagctctgactcggtcctctcct
gctgagatccgtgctctattccaacgtttggtggaggaccagatcatctccgaggcctat
ggaaagagcttgggcctgttccaactttttgaaaggatggcacctgcagcatgtaaacca
aagtctgatctaatgagttctcaagggtctacctcccactggaccctcaaccagggtcaa
ctcagccaggtgaggaaatgtgacccttaccagacaggattagagtttgaaccgtcagtg
gctgaacatgactgctcaggaggacccagtccaactattgatccactttataaacatcaa
gggaataatccaaagattattcaggaattgggtggggggccagtgatggacaaacactac
ctcaaccacaggctctcttctacatcgataataagtgactatcaatgcggtttcagatca
gacaatcgaatgaaggaactgctgagaggtgcagaaagaatgcagaagccattaagtgaa
aatgaaataatagatgaggggaatttggaggatgagaaggagtggttagagcaggtagag
gaggcggcgagaaggatagctgtccctctgtggcagcactgggacagaggacggaggatc
ttgctgccactggttcctggtatgactgctggctgtgcaaccggagaaaacacaacaaaa
aacagagaagcacagtgccatgttttcaatatggaagaggaaacggagcttgcaatcgct
tgcaggactttagatttgtactgtgacagctttaactgtacagaggcagtctcaagattc
acactggacaacgaaggagccactggcactgcagaaagcccgtatttctcgacatacgac
agcgtagcgacaactgatttgaaccagttctttgcctatgaaacaggaagagaagtctca
cctgatgtcgatgtctgccgggcagctgaaaggtcaacaaagaatctgctctgttcaatg
ggagatggacaatggggcatggacacaggatttacagaagatattacacatgtattttct
ccctgtacacttacagacactcacaccgacgcacaagaccactcgttttactccaacaca
gatcagagcatgacattaggtattttcaacgatgcagaaaatgtttgtaatacaaacact
tgcatgactgatgacacgagggacttgcattggaataaagaggatgaggagggggtggat
tcacactgtggtgccaagatgcaggaaatggaacaggacccgtttttatgtccttttgat
ctagcagatgatttatctgagatcttgactgatcacttcctggggagactagtggatcct
aacctcgacactgaggggttctttggcgatccactgtttaattgtgaggaggaactcagc
acttgcactgatcttcccatgatgacggagcccttccccgacatccagcagcagggagag
gaggacaaaacaacaggcaaaacaaaacgcagaagtaaaagacccagagctcctcggata
caacagtgccccgatgacacaccatctaggccaaagagacaaagagcagcagctcggcca
aaaactaaagtggtgcaggctgagctgtcaatcacccaagccacaggatcagagccaagt
tcagcagagacagctggcctctccaccactccaccaagaatcctccatctccatccctcc
atacagtttatcaccatcccagacactccatcatgtcaggttgttcggaccctgaggctc
tctccttcagtaattacacttccaatcaccaatactgctgctacacctacttacatattt
gtttctactggatcgccgcaattcaaacctcaagtgccacccctctccccgacgaatggt
gaagtagcaccagtccaaatgagttcatccccacgcggatctctgtcagacactgcaagc
aaatcattaactcatccttgtgcctcacccctctcacctggcaatgagccgtctacgtgt
aaggaatcccctcttcctcagtgtcccacagtccttgatattccacaggatgtgaaggac
tacatccaggatgccaaagcacacatgagtcaagcatgccaggttatggaggctggcctc
agcttgacctctcattatgtggatgtgccagtgagccagagggagattcttcgctctgga
aaaaacataaacaaagccctggacaaagagatagtcatcatgggagatacagatcgacaa
aaaagcttgttggggaggagtcagatctttgagagatcgaatggagacaaaccaaagcgc
tacattttgcttctaggcaatgctggcatgggaaaaaccaccctgatcagaagactgtgt
ctcgactggtccacagactgcatcccacagtttgactttgtcttcttgttagacagcaag
gcactctctttaacggacgctacctttagccttcagaccctcttactaaacctctcctcc
tttgccccttcctgcaaggactccaacgcagtgtacgctcaaatccttgcagcccctaag
cgcgtgcttgtcatttttgatgggttttgcgagttgcgggactatgaaattcttctccag
actcaagaaaaagacttggtaacgtcgttacagaaggacagtaaagcacagaccttcaca
gtaaaacagttgtactctgccatccttcagagggtcctccttccaggatgcacacttctg
ctttctacccgaacgagaggcacagccagccagcttctccgccgaacggacagccttttg
gaggtgtgtggcttcacccccactgacgtacagatatatcagtcccagtacttcactgat
cctgacctcagagtatctgctttggattgcttcaaaaactgcagctatctacatctcctg
tgctggaaccctggactttgtcgcttggtctgcttggttttagaacaatgcaaaagtttg
gaggtcctaccgagaacgctaaccgagctctgccatcaagtgcttcgtatgaaagtggaa
aaagacagtaaggacacaaactcacaggctgaaactccatcggaaatatctgagaaatca
gttgaagaaacccagacaaaaagctcaagtagttctcaaatgaagaggcgtaataaaaac
actcgcacgcatagaacaagggcttcaaaaaaacaggaaaaagagaaagatgacaaagac
ggagaggaaatgaagagtaatggctgggaagtagttaaaacccaggagagggagttgctg
gcccagctaagttctctggcctgggaggggatcaaagcaaactcttccattgtccccaaa
ggaaggaccatatctgcaaaactcaaggcgttcggccaaagaacagggctcttactctct
tataatctggggacaaggcaagttgtctcaagttgtgagagtgaggacagaaggaaaact
ggaacaagagagactggagtaaagaggggaagcaagggaaggacggaaactgaaaacgct
gatgccagtgatgaccacatcctgatgtggggcaaccctttccttcagagttaccttgca
ggtgtccatttgtctctgtcgaggacaataacagaccgtgccttcctccagaccctccct
ttccaatctggccagaagggtcgccggcggcctcaaagggaggagctcgatctgactcag
cggtttgcggtcgggctgttgttctacaaccggagagagcttcagaggtttcactcatac
acagagacaaccttcagagacatggtggcctctaagcaggctttagtgacaaaacacctt
gaaggtctttcccatgatgacctgagccccgcccaggtcctggaggcttgtcgctatgtt
tatgaggcgagttcctcacatggtgatggtagcagagacagtggtagtcaacgattagtt
gctcatctggcagagaaccttccagaggtcctgacatttcacggagttccttttaagcca
tcggacgtgtttgctgtgcagaacgttctcgaccagggtggagctggcggtagaaggttt
tgtttgaatctggaggattctgggatacagatttcgggactcagagctctgttggggctc
aacaacatcaacacatacagggcatgcattgctgatgtgatcaccttatgggagcagcta
gagcagagcggtgaagaagcgctcctacaagtgacggtgtccaaattcatggtccaccct
ctgaaagccacacaagtgtgtcacatagagcacctggcaaagctggtgaacatacatgtg
cacaagaggctgtcagacagttccagccaatccgattcaatcctggcagagggggtacca
gcagtgaaagcgctacacaagctagagttggagcttggtccagagaaaggtcccctggtt
cttcccaagctatgggagctcctgccaggtcttcataacctacagcacttagatctagag
aacagtacgattggggacaaaggagcagaggaattggcggatactttagtctcacttggg
tccctggagattctcaatttgtcacagaattgcataggagaccagggggtgaggaaactg
gcaactgtgctgagggatcttcccaaactgcactgtttaagtctctacagtaatgtgatt
tgtgacgaaggggcagagactctggctgctgtcctcccacacatggcttcgctcactgac
ctggatgtcaagtacaacaagctaacaagtgttggagcacagagcctgggagccagtctg
agaaactgtagaaaaataaagaccttgaggatgtggaaccagtgtattccttacggtgtg
tttgagagacttcagcagcaggacaacaggatccagtggcagtag
DBGET
integrated database retrieval system
