Trematomus bernacchii (emerald rockcod): 117493274
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Entry
117493274 CDS
T09643
Symbol
shank1
Name
(RefSeq) LOW QUALITY PROTEIN: SH3 and multiple ankyrin repeat domains protein 1
KO
K15009
SH3 and multiple ankyrin repeat domains protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank_2
SAM_1
Ank
Ank_4
SH3_2
SAM_2
Ank_5
PDZ_6
PDZ
SH3_9
FERM_f0
SH3_1
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
117493274
NCBI-ProteinID:
XP_033999646
LinkDB
All DBs
Position
Unknown
AA seq
2540 aa
AA seq
DB search
MTMPFSPLSSDEEHQRMLGNNRHLYPGAENEEEEEEEEEEEMEEEEREEDQEEENGELEG
EEEDYEAEVVEEVRRGGVSRAGRAEGHRQSGKVAGRPADDRQVRTGNPGHTANPYSSNPG
PTHQPPANHVQPQQPPQQRRLKERSTGSLPSEDTHIAMMVFRIGIPDIKQTKCLRFNPEA
TVWKAKQQVLCSLTESLRDVLNYGLFQPATDGHDAKFLEEERLLREYPQSFEKGVPYLEF
RYKTRVYKQTNLDEKQLAKLHTKASLKKFMDYIQTSAVDKMTKFLDKGLDPNYQDPDTGE
TALSLAVQCEPGGGESIRVLVEGGAHIDFRAKDGLTPLHKAVRGHRHTALLVLLSLGASA
DYKDRRGLTPLYHTVLTGGDTSCCETLLYHHAKLGIRDENGWDETHQACQNGNSQHLEHL
LFYGADSSSQNASGNTALHICALYNKESCSRILLYRGANKDTKNNSGQTAFQVAVMSGNF
ELGEIIKNHRDTDVVPFVESPKYAPQRRESTRTLTIPHPHPFLRANSDSSMNLPDWMAVP
NAPGTNIVSVQGYKHTGTLRSSSSPRGARTRSPSRGRIGDKEDRSRQSRRQGPAPATTAA
QTAGQRRRLYSAVPGRVFVATRSHSAQGEREISFNKGERVKVLSVGEGGYWEGTVRGRTG
WFPSDCVEEVMLRSQDNRSESRGERAKRLFRHYTVGSYDSFDAPRDESSELMVQISVIAA
VARIKLYTIFTCSCSFPSPQETSTLLTAGQMRTRGGGEGGEAMAMGACGEEDLSLSLSLS
SSWPSLGPVNRSVWFIYSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFP
ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNSLMVKVVMVT
RNPDMEEGSRKKIPQQSKRLSTPAIALRSKSMTSELEEMVERAATPWKKKSEFESSQVTE
KKRTVYQMALNKLDEILAAAQQTISTNEAPGTRGQGPKRDRGRSFYGNEPNYGDQSGMGM
MSSGLGLGYERGQFTSGHGPPHGMLRQKSIGAVEDERQFLHPPAMKFARSLSVPGPDEIP
PPPTTAPPEPPFSSAPPLGWRAKSSQQPSVSVSQSTATSAHYQPYSQPVHFTHGGRERTG
GPSTGPSGGAVDHTTSYAHAAAHTAQSRTASRKVAYTGEPGGAGSGAGGGAGGGAKAAGL
RRGYSTAVPPSSIATVMPQQQQPAQSQSHRAERSAAGAGGPKGGARRGKGPLMKQSKVED
LRLSQGTLGGKGTVEKSSIPIPTIIVKAPSTSSSGRSSQGSSVEADVLASGEADEAKTAH
GPPPSSPAPQPPAPPSIPAPPPPSLPSMRAQDNMDYTSQFGAAIVGAARRDRERFHELRR
KGSSMFMSADEDVILGGXGSDGISRTQVSQQQLSTQAESSSTRLRPSKSIDEGMFSGDSF
IHHTRSMPPAFDLPEYSSAAQDYQPKSVPTDLYTGRQSASSSKTTFIHPLTGKALDPTSP
LGLALAARERALRDDSRLRRGTEPHFTRQMSSGGFPSSSVTSQPVSSTAQSSSSSYLVTS
SSLAATTATVGRPPSPRILRGVGSVWNEEGGGGEREREGGGAREGLRVRFSEDKTVHTHH
YQSQPFQPSYKERERERSRERERSREREREQEREGYLRRAEQAADSAAQQGSQQPQRPSF
LRMESQADAYILSLTPPSPPPTGTQQTANSTGSTGSGLMVLPPPAPSIDADDEFVYADPL
PPPLQFANSFDRGMGGMSGYSQHGMRPNSLLSRQQQVPPPPPPPPPPPPPPTTQKESFIG
GFPAHTPLPSPQAGDSTASSLTSYDSEVANLTQSAHSPSQTSPNPLPSHSPSTLQPTSAS
GPPPPPSVSPPPPPGSYHRPFSMSHPHHLYNSSHTPGRSPTPPPHTVTPPPAYRGPQAPS
STAATPAPHRGAASHAMTASCAATTTAAATTTSTSTQLYQERTHTTHTTSSTAISRKTGE
HHRPPPTTKKGESLETVVDSGIEELDSRSSSDHHLDSILAGVRGDRLDRGERGGRGGTGE
SERGGDFLESYMSYLDGQSFEMQNATAATSTYPKSNRFREGGRTSDIHRQTSTAPTSFHS
HRQREEQTEDEADDGVDEGGRDRYGSRDMHLGRPVSPYFDRPRTPEMKPLWDEGQMAGDQ
SAALLEGKKIYPPASSMKPSIINELNSKLQQRTKETWSSQRALSRHRSRNRFSEDSASAL
SPPSARSTSPSPISLSQPSLSPSPTPTPTRTSQYPNWGRSPSPQPQVASQPPRSQSPLSP
TGYAPYPTSPKHRPVYRTKALEFQFIPSRESRKAESHMMQRRRAPSPLISPSERPKVGPP
RPSSLPLLPTTPLYSAMYDLRGSVTPPSPGNPLGDPYFSPSPPLFAPSGAPPPPNNALVV
SRSLSPTHFLSGTSSPPMHPHPPPTCLSYPHLPPPSPTKPFAAKPLPYWTKYDVADWLGY
LNLGEHRDRFLDNEIDGSHLPSLTKDDFLDLGVTRVGHRMNIERALRTVMDRLSSSPFPI
SVLSPRDGQTDRRRDDGSRS
NT seq
7623 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgccgttcagccccctgtccagcgacgaggagcaccaaaggatgctgggaaac
aatcgacatctctatccaggggcagagaacgaggaagaggaggaggaagaggaggaggag
gaaatggaggaagaggagcgtgaggaagaccaggaggaggagaatggcgagctggagggg
gaagaggaagactatgaagcggaggtggtggaggaggtcaggcgaggcggcgtgtcgagg
gcaggcagggctgagggacacaggcagtcaggtaaagtggccggacgacccgcggacgac
agacaggtccggacagggaaccctggacacaccgcaaacccctactcgtccaatccggga
cccacgcaccaaccgccagccaatcacgttcagccgcagcagccgccgcagcagaggagg
ctgaaggagcgcagcaccggctcccttccatctgaagacacccacattgctatgatggtg
ttccgcattggcatcccagacataaagcaaacgaaatgtttgcgctttaacccagaggcc
acggtgtggaaggccaagcagcaggtgctgtgctccctgaccgaatctctgcgggacgtc
ctgaactatggtctgttccagcccgccactgatggtcatgatgccaaattcctggaggag
gagaggctgctcagagagtacccacagtcctttgaaaaaggggtaccatatttagagttt
cgatacaagaccagggtgtacaaacagaccaatctggatgagaagcaactagccaaactg
cacaccaaggctagtctgaagaaattcatggattatatccaaaccagcgctgtggacaag
atgacgaagttcttagacaaaggcctcgatcccaactatcaggaccctgacaccggcgag
acggctctgtccctggcggtgcagtgtgagccgggtggaggggagtccatccgggtcctg
gtggaggggggggctcacattgacttccgtgccaaagatggactcacacccttacacaaa
gctgtgcgaggccaccgccatacagccctgctggtcctgctgtccctgggtgcgtctgca
gactataaggaccggcgagggctgacaccgctctatcacactgtgctgacggggggggac
acctcctgctgtgaaacactgctctaccaccacgccaaactgggcatcagggacgagaac
ggctgggacgagacacatcaggcctgtcaaaatggtaactcgcagcatctggagcacctc
ctcttctatggggcagattcttcctcccagaatgcctctggaaacactgccttgcacatc
tgtgctttatacaacaaggaaagctgttcgcgaattctgctctacaggggagcaaataag
gacacaaagaacaatagtgggcagaccgcttttcaggtggctgttatgtcaggcaatttt
gagctgggagaaatcatcaaaaaccaccgggacacagatgtggttccctttgtggaatct
ccaaagtacgccccgcagaggcgagagagcacccgtaccctgacgataccccaccctcac
cccttcctccgagcaaacagtgacagcagtatgaacctcccagactggatggcagtgccc
aatgccccagggaccaatattgtctctgtgcagggctataagcatacaggaaccctgcgg
agctccagcagtcccagaggggcgaggacgcgctccccgtcccgaggaagaatcggagac
aaggaggaccggagcaggcagagtcggagacaggggcctgcccctgccaccacggctgca
cagaccgcaggccagcggagacgcctttacagcgctgtcccaggccgagtctttgtagct
actcgatcacattctgcccagggagagcgggaaatcagctttaataagggtgaaagggtc
aaagtgttgagtgttggcgagggcgggtactgggaggggacagtcagggggcgcacaggc
tggttcccctctgactgtgtggaggaagtgatgcttcgaagccaagacaaccgatcagag
agtcgtggagagcgggccaaaaggctgttccgtcattacacggtgggatcctatgacagc
tttgatgctcccagagatgagagctctgagctgatggttcagatctctgtcattgccgca
gttgcacggatcaaactgtacacaatctttacatgcagctgctccttccccagcccgcag
gagaccagtactctgctaacagcgggtcaaatgaggacgagaggaggaggagagggaggg
gaggcaatggcgatgggggcatgcggcgaggaggatctctccctctccctctccctctct
tcttcctggccgtcgctcggccctgtgaataggagcgtctggttcatttacagtgactac
ataataaaggagaagacagtgcttctacagaaaaaggacagcgagggtttcggctttgtg
ctaagaggggccaaagctcagactcctatcgaggagttcacccccaccccggctttccct
gctctgcagtacctggagtctgtggacgagggaggggtcgcctggagagccgggctcagg
atgggggatttcctgatagaggtcaatggtcagaatgtggtgaaggtcggtcaccgacag
gtcgtcaacatgatccggcaggggggaaacagccttatggtgaaagttgtcatggtaacc
cgcaaccccgacatggaggagggttcgaggaagaaaatcccccagcagagcaagaggctg
agcacccccgctatcgccctacgatccaaatccatgacttcagaactggaggagatggta
gagagagctgctaccccttggaaaaaaaaatcagaattcgaatcctcccaagtcacagag
aagaagaggacagtctatcagatggctttgaataaactagatgaaattcttgcagcagct
cagcagaccataagcaccaatgaagcaccagggacacggggacaggggccaaaaagagac
agaggacgaagtttctatggcaatgagccaaactacggggatcagtctgggatggggatg
atgtcgtctgggttgggcctcggctatgaacgtggccagttcacctcaggtcacggccca
ccgcacggtatgctgcggcagaagtccatcggggcggttgaggacgaaaggcagttcctg
catcctccagccatgaagtttgctcgcagtctgtcagtgcccggcccagatgaaatcccc
cctcctcccaccacagcaccaccagaacctccattctcctctgctccgccacttggttgg
agagcaaagtcctcccagcagccctctgtctctgtgtcccagtccacagccacctctgca
cactaccagccctactcccagccagtgcacttcacccacgggggcagggaaaggacaggg
ggtcccagcactggccccagtggtggagcagtggaccacaccacctcatatgcacacgca
gctgcccatactgctcaaagcaggactgcttcgaggaaagttgcctatactggagagcct
ggtggagctgggtcaggggctggtggaggggctggaggaggggccaaggcagcaggtctt
agaagaggctacagcacagcggtccccccctccagcattgccactgtaatgccccagcaa
cagcagcctgcccagagccaatcccatcgcgcagagcgcagtgcagctggagcaggcggt
cctaaaggaggggcccggagaggtaaaggccccctgatgaagcaatccaaggtagaagac
ctgcgcttgagccagggtacactggggggtaaaggcacagtggagaaaagctccatcccc
atccccacaataattgtcaaggccccttcaaccagcagcagtgggcgcagcagccaaggc
agcagtgtggaggccgatgttcttgcatcaggggaggcagatgaagccaaaacagctcat
ggtcctcccccctccagtcctgctccgcagccccctgccccaccttccatcccagcaccg
ccgcctccatccttaccctcaatgcgtgcccaggataatatggactacactagccagttt
ggtgctgccattgttggcgctgctcgccgagacagggaacggtttcatgaactccgccga
aagggttcctcaatgttcatgtctgctgatgaggacgtgattcttggggggnnggggagt
gatggcatttcaaggactcaagtgtcgcagcaacagcttagcacacaggctgaaagctca
tcaacacggctgcgcccctccaagtctattgatgagggcatgttctctggggacagcttt
atccatcacacccgcagtatgcctccagcctttgacctacctgagtactcctcagctgcc
caggactatcagcccaaatctgtacctactgacctttacactggcaggcagtccgcatcc
tcgagtaaaaccaccttcattcaccctctaacaggaaaggctcttgaccccacatcgcca
ctaggtctcgccctcgctgcgagagagcgtgctctgagggatgacagcaggttaaggagg
ggaacagagccccacttcacccgccagatgtcgagtggggggtttccttcttcttctgtc
acctctcagccagtgtcttccaccgcccagtcctccagctcctcgtacctggtcacctca
tcttctttggctgctaccacggccactgttggccgcccaccctcacccagaatcctcaga
ggagtcgggagtgtgtggaatgaggaaggcggtggaggagagagagagcgggaaggagga
ggggcacgtgaggggctaagagttcgcttttctgaagataaaacggtccacacacaccac
taccagtctcagccgtttcagccatcctacaaggagagggagcgggagaggtcgagggag
cgggagaggtcgagagagagagagagggaacaagagagggagggttacttaaggagggca
gagcaggctgctgatagtgctgctcaacaggggtcccagcagcctcagagaccctctttt
ctcaggatggaaagtcaagctgatgcctatatcttgtccctcacccctccctctcctccc
cctaccggtactcagcagacagccaacagtactgggagcactgggtctggtttgatggtt
cttcctccccctgccccttcaattgatgcggacgatgagtttgtctacgcagaccctctc
ccacctccgttacagtttgctaacagcttcgacagggggatggggggaatgtcagggtac
tcgcaacacgggatgcgccccaacagcctgctttcccgccaacagcaggtcccgccccct
ccacctccacctcctccaccaccaccgcctccaacaacccaaaaagagtcatttataggt
gggtttcctgctcacacacccctgccctcacctcaggcaggggactccactgcctccagc
ctcacatcgtatgacagcgaggtggctaacctgactcagtccgctcactccccctcccaa
acctcacccaaccctctgccctctcactcgccctctaccctgcagcccacctcagcatcg
ggacctccgcctcccccctcagtctcgccaccgcctcctcctgggtcctatcacagaccc
ttctctatgtcccacccccaccacctttacaacagctctcacacgcctgggcgctccccc
acgcctcccccacacacagtcacgcccccgccggcctaccgtggtccccaagccccctcc
tccactgctgccacgcccgctccacataggggcgctgcctcacatgccatgaccgctagc
tgtgccgctacaaccaccgctgctgccaccacaacaagcacctccactcagctctaccag
gagcgcacacacaccacacacacaacatcttccactgccattagtcgcaagacaggggag
caccaccgtcccccccccactaccaagaaaggagagtccctggagacggtagtggactct
gggattgaagagctggacagccgcagcagcagtgaccaccacctggacagcatcctggcc
ggggtccggggagacaggctggaccgtggggagaggggaggacggggtgggacgggggaa
tcagaaaggggaggagatttcctggagtcttacatgagctatctggacggacaatctttt
gagatgcagaatgcgacagcagccacctccacctacccgaaaagcaacaggttcagagag
ggaggtcgcaccagtgacatccacaggcagaccagcactgctcccacatccttccactcc
cacagacaaagggaggagcagacggaggacgaggctgatgacggagtggatgaaggtggc
agggatcggtatgggtcgagggacatgcatttgggacgtcccgtttcaccgtactttgat
cgccctcgcacccctgagatgaagcctctctgggacgaggggcaaatggccggtgaccaa
tctgcagcacttttagaggggaagaagatttaccctcctgcatccagtatgaagccaagc
atcataaatgagctgaacagtaaactgcagcaaagaaccaaggagacctggagcagccag
agagcgctgagcagacacagaagcagaaacagattttcagaagactccgcctcagctctg
agccccccctcagctcgatccacgtcaccgtctccgatttcattatcgcagccatcattg
tccccgtccccgaccccgaccccgacccgtacttcccagtaccctaactggggacgttcc
ccatctcctcaacctcaagttgcctctcagcctccacgttcccaatcccccctgtcccca
acaggttatgccccttacccaacttcccccaaacacagacctgtgtaccggaccaaagca
ctagaatttcagttcatcccgagtcgagagtcccgtaaagcagagtcacacatgatgcag
cgtaggcgagcacccagccccctcatctccccctcagagaggcccaaggtgggtccacca
cggccatcttccctcccgctgctccctaccactcctctctacagtgctatgtacgacctc
cgaggttcagttaccccaccatcacctggaaaccctcttggagatccttacttctcgcct
tctcctcccctgtttgccccctctggtgcccctcctcctccaaacaacgctttagttgtt
tctcgctccctctccccaactcacttcctgtcggggacctcttctccgcccatgcatcct
caccctccacctacatgcctgagttatccccatctaccgcccccttcccctacaaagcct
tttgccgccaagccgctgccctactggaccaagtacgacgttgcagactggttaggatac
ctgaacctgggagagcacagagatcgtttcctggacaacgaaattgacggctcccacctg
ccctccctaacgaaggacgactttctggatctgggtgtaacacgtgtcggccaccgcatg
aatatagagcgtgccctgaggaccgtaatggacaggctatccagcagcccatttcccatt
tctgttctctcacctcgggatggacagactgacaggaggagggacgatgggagtcggagc
tga
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integrated database retrieval system
