Trematomus bernacchii (emerald rockcod): 117493395
Help
Entry
117493395 CDS
T09643
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117493395 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117493395 (xab2)
03041 Spliceosome [BR:
tben03041
]
117493395 (xab2)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117493395 (xab2)
Spliceosome [BR:
tben03041
]
Complex B
Other components
Prp19-related factors
117493395 (xab2)
Complex C
117493395 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_8
TPR_12
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
TPR_MalT
LTN1_E3_ligase_6th
TPR_1
Motif
Other DBs
NCBI-GeneID:
117493395
NCBI-ProteinID:
XP_033999823
LinkDB
All DBs
Position
Unknown
AA seq
846 aa
AA seq
DB search
MPSLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNAGRSTLNMIYERALKELP
GSYKLWYNYLRERRKQIKGKCVTEPGYEEVNNCHERALVFMHKMPRLWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENTEEYID
YLRTVGRLDEAALRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMEATAEMGKDEEEDVDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNARQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLEDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYYEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDDGERHTMFNIYIKRAAEIYGVTYTRAIYQKSIEVLPDMHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMTSQMMKATTSSTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQDK
PKPKEKILFVRSDTSRTELAELAKQANPDEIDIGDDDEDDNNQGPEEVQLEQKSVPTAVF
GGLKED
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgctaaacggaaaacccgatgttatgtttgaggacgatgatctcccttatgaa
gaagagatcatcaggaacccatactcggtcaagtgctggatgcgttacatcgaattcaag
cagaatgcaggaagatccaccctgaacatgatctatgagagggctctgaaggagctgcct
ggcagctataagctgtggtacaattatctgagagagagacggaaacaaatcaaagggaaa
tgtgtcactgaaccaggatatgaagaggtcaataattgccatgaaagggcattagtgttc
atgcacaagatgccgagactatggcttgattactgccagtttcttgtttctcaatgcaag
atcacaagaagtcggcaaacatttgaccgtgccctcagagctcttcctgttacacagcat
ccacgtatctggcctctgtatctccgctttgcccgtaacctgcccctgcctgagacagcc
attcgggtgtatcgcaggtaccttaagctttccccggagaatacagaggaatacatagac
tacttgcgtactgttggccgcttggatgaagcagctttgcgactagcagctgttgtcaat
gacgagagctttgtgtccaaagagggcaagtctaactatcagctgtggcatgagctctgc
gacctgatctcccagaaccctgacaaagtgacatctctgaatgtcggagccatcatcaga
ggaggcctcactcgcttcacagaccaacttggaaaactctggtgttcattagctgactat
tacatcaggagtggtcactttgagaaggctcgtgatgtttatgaggaagccatcctcacg
gtggtaactgtaagggatttcacgcaagtgtttgatagttatgcccagtttgaagagagc
atgatcgcagctaagatggaggccactgctgagatgggaaaagatgaagaggaggatgta
gacatggagcttagactggcccgctttgagcagctgatagcccggcggccgctcctgttg
aacagtgttctactgcgacagaaccctcataatgtacatgagtggcacaagcgggttaaa
ctgtatgacggcaatgcacggcagatcatcaacacgtacacagaggcagtgcagacggtg
gatccaatgaaggccaccgggaagcctcactctctctgggtttccttcgctaaattctat
gaggaaaatgagcagcttgaggatgcccggaccatttttgagaaggctactaaggtgaac
tacaagcaggttgatgacctcgctgcggtgtggtgtgaatatggagagatggagcttcgc
catgagaactatgaacaggcactgcgtatactgaggaaagctacagccatcccatccaag
aaggctgagtactttgatgtatctgagccggtccagaacagagtttacaagtccttgaag
gtctggtccatgctggcggacttggaggagagtctcggcactttccagtccacaaaagca
gtgtatgaccggatcattgacctccgcatcgccacaccacagatcatcatcaattacgcc
atgttcctcgaagagcacaactactatgaggaaagctttaaagcatacgagcgaggtatt
gctctctttaggtggccgaatgtttatgacatctggaacacttacctcaccaagttcatc
gatcgttatgggggcaagaagctggaaagagctagggatttatttgagcaagccctcgac
ggctgccctgccaagtttgccaagaccatttacctgctgtatgccaaactggaggaggga
tatggattggcacgacatgccatggccgtctacgaaagagcaacgcaggcagtagatgat
ggggaacgacataccatgttcaatatatacatcaaaagagcagctgagatttatggagtc
acgtacacaagagccatctaccagaaatctattgaggtccttcctgatatgcatgccagg
gacatgtgtctgcggtttgccgacatggagagtaaactcggggaaattgatcgggcccga
gcaatctactcctactgctcccagatttgtgacccacgggtgaccgcaactttctggcaa
acatggaaagaatttgagatccgccatggaaatgaagacactattagagaaatgctaagg
atcaaacgcagtgtccaagccacctacaacacccaggtcaactttatgacctctcagatg
atgaaggccacaacaagctccacagtgtccgatcttgctccaggccaaatgggaattgat
gacatgaaaatgctggaacagaaagcacagcagctcgctgcagaggccgagcaggacaaa
cccaagcccaaagagaaaattctctttgtcaggagtgacacctctcgcactgagttggct
gaacttgccaaacaagctaatcctgatgagatcgacatcggtgatgatgatgaagatgat
aataaccagggaccagaagaggtgcagcttgaacagaagagtgtccctacagctgtcttt
ggagggcttaaagaggactga
DBGET
integrated database retrieval system
