Trematomus bernacchii (emerald rockcod): 117493555
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Entry
117493555 CDS
T09643
Symbol
pold1
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03030
DNA replication
tben03410
Base excision repair
tben03420
Nucleotide excision repair
tben03430
Mismatch repair
tben03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117493555 (pold1)
03410 Base excision repair
117493555 (pold1)
03420 Nucleotide excision repair
117493555 (pold1)
03430 Mismatch repair
117493555 (pold1)
03440 Homologous recombination
117493555 (pold1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tben03032
]
117493555 (pold1)
03400 DNA repair and recombination proteins [BR:
tben03400
]
117493555 (pold1)
Enzymes [BR:
tben01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
117493555 (pold1)
DNA replication proteins [BR:
tben03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
117493555 (pold1)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
117493555 (pold1)
MMR (mismatch excision repair)
DNA polymerase delta complex
117493555 (pold1)
BRITE hierarchy
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
DNA_pol_B_exo2
divDNApol
Motif
Other DBs
NCBI-GeneID:
117493555
NCBI-ProteinID:
XP_034000071
EnsemblRapid:
ENSTBNG00005005177
LinkDB
All DBs
Position
Unknown
AA seq
1105 aa
AA seq
DB search
MDSKRRNGGSKLGGASQAKRGKPAGEWEDSPSQFEEELSMFEEAEMESEEMEGQAGHDVI
PVGDLFSADLNPRWRRPIAASLDPSSESLVFQQIDLDYYLGPTVAGMPGQSQGTVPIIRM
FGVTDSGNSVCCHVHGFAPYFYVPAPAGFKSDFLGEFKRELNSVVLKDMRSNKDNISVTV
LAVDITRKESMYGYHGKRILDFLRITMAMPRLIAPAKRLLEQGFKYGPFPIQCYQSYEAN
IDFEIRFMVDCDVVGCCWIELPKSKFRVREEKLVGGTDSRYPSKESLCQYEVDVGWTDLI
SHPTEGDWQRIAPLRVLSFDIECAGRKGIFPEADKDPVIQIASMVQRQGESEPFIRTVFT
LQSCASIVGSQILCFTQEKQLLQSWAEFLRTVDPDIVTGYNIQNFDFPYLINRAATLKVN
LFPYLGRVRGIKSVMRDLNFQSKQMGRRENKIINMEGRVQFDLLQVLLRDYKLRSYTLNA
VSYHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMPVVKTEVGEDYTGATVIEPEKGYYSI
PIATLDFSSLYPSIMMAHNLCYTTLLQKGSGEQLSLAPENFIKTPTGDMFVKSSVRKGLL
PEILENLLSARKKAKTELKNETDPFKRQVLDGRQLALKISANSVYGFTGAQIGKLPCLEI
SQSVTGFGRQMIEQTKQLVESKYTIANGYQGDAKVIYGDTDSVMVKLGVATVQEAMNIGR
EAAEWVSTHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSGSADTYEKMDCKGIETVRRDN
CPLVANLINTCLQKCLIDRDPQGAVAHAKEVISDLLCNRIDISQLVITKELTRAAQEYSN
KQAHVELAERMRKRDAGSAPNLGDRVPYVIIKATKGVAAYMKSEDPIFVLENNIPIDTQY
YLEQQLSKPLLRIFEPILGESKAENILLKGDHTRCRTVLTSKIGGLMAFAQKRSTCIGCK
AVLKSDTAVCDFCKKKESALYQKEIFHLNTLEERFSRLWTQCQRCQGSLHEDVLCTSRDC
PIFYMRKKVQKDLDDQSSLVNRFGW
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atggattctaaaagacgcaatggtggctctaaacttggcggtgcgtcccaggccaaacgg
gggaaacctgctggtgaatgggaggatagtccatcgcagtttgaagaggagttgtccatg
tttgaagaagcagagatggagtcagaggagatggaggggcaggcagggcatgatgttatt
cctgtaggtgacctcttttcagcagacctgaaccctcgttggcggcggcctattgccgct
tcactggacccgtcatcagaaagtttggtgtttcagcagattgatctcgactattattta
gggccgacggtggcaggcatgcccggccagtctcagggaacagtcccgattattcgaatg
tttggggtgacagacagtggcaacagtgtgtgctgccatgtccacggttttgcgccttac
ttctatgttcctgcaccagctgggttcaaatcagatttcctgggtgaatttaaaagagag
ttgaactctgttgtcctgaaggacatgcgatccaataaggacaacatatccgtcacagtg
ttggctgtggacatcacccgcaaagagagcatgtacggttaccatgggaaacgcattttg
gattttttgcggattaccatggcgatgccacgtctcatcgccccagctaagaggctgctg
gagcagggcttcaagtacggacctttccccatccagtgctaccaatcctatgaggccaac
atcgattttgagataaggtttatggtggactgtgacgtggtgggatgctgctggattgaa
cttcccaaaagcaagttcagagtgcgtgaagagaagctcgtggggggaacagattctaga
taccccagcaaggagagcctgtgtcagtacgaggtggatgtgggatggacagatctgata
agtcaccctacagagggagactggcagaggatcgctccgctcagggtgctcagcttcgac
atcgagtgtgcaggaagaaaaggaatcttcccagaggcagacaaagaccctgtgattcag
atagcctctatggtgcagcgtcagggtgagtcagagcccttcatccgcaccgtgttcacg
ctccagtcctgtgccagcatcgtgggctctcagatattgtgcttcacacaggagaaacag
ctactgcagagctgggccgagtttttgaggacagtggacccagacatcgtcacaggatac
aacatccagaactttgactttccctacttgatcaacagggcagctactttaaaggtgaat
ctctttccctacctcggccgagtgcgaggcatcaagtcagtcatgcgagacttaaacttc
cagagcaagcagatgggccgcagagagaacaagatcattaacatggagggccgagttcag
tttgatctattgcaggttcttctcagggattataaactgcgctcctacacactgaacgct
gtgagttaccacttcctacaagaacagaaagaggatgtgcagcactccatcatcactgat
ctgcagaatggcaacgagcagactcgtcgtcgtctagccgtctactgcctgaaagacgcc
tacctcccgctgcgcctgctgcagaagctgatgtgtgtgattaactacatggagatggcc
agagtgacgggcgttcctctcacctacctgctctccagagggcagcagatcaaggttgtc
tctcagctgctgcgacaggccatgaagcaggaccttgtcatgcctgttgtgaagacagaa
gtaggagaagactacactggagcgactgtcattgagccggagaaagggtattatagcatc
cccattgctaccctggatttctcctccctgtatccgtccatcatgatggctcacaatctg
tgctacaccaccctgctgcagaaaggctcaggggaacaactgagcctcgctccagagaac
ttcatcaagactcccactggggacatgtttgtgaaaagctctgtgaggaaaggactcctg
cctgagatcctggagaacctgctgtctgccaggaagaaggccaaaacggagctaaagaat
gagacggaccccttcaagaggcaggtgctggacggccggcagctggctctcaaaatcagt
gcaaactccgtgtacggcttcacgggggctcagatcggcaagctgccctgcctggagatc
tcacagagcgtcacaggttttggaagacagatgatcgagcaaaccaaacagctggtggag
tccaagtacaccattgccaatggttaccaaggtgatgccaaggttatttatggggacaca
gactccgtcatggttaagctcggagttgccacagtgcaggaggccatgaacatcgggagg
gaggcggcagagtgggtgtcgactcatttcacacctcccatcaaactggagtttgagaag
gtgtactacccatacctgctgatcaacaagaagcgctacgcaggcctgtatttctccgga
agtgcagacacttatgaaaagatggactgtaaaggcattgagacggtccgcagagacaac
tgccctctggtggctaacctcatcaacacctgtctgcagaaatgcctcatagacagggat
cctcagggtgccgtggctcacgctaaagaagtgatctcagacctgctgtgcaaccgcatc
gacatcagccagctcgtcatcaccaaggagctgacgcgcgcggctcaggagtactccaac
aaacaggcgcacgtagagctggccgagaggatgaggaaaagagacgccggcagcgccccg
aacctgggggaccgagtgccgtacgtcatcatcaaggctacaaagggagtggcagcgtac
atgaagtcagaggacccgatcttcgtgctggagaacaacattcccatcgacacacaatac
tacctggagcagcagctgtccaaacccctgctgagaatatttgagccaatcctgggagag
agcaaggccgagaacatcttgctcaagggcgaccacacgcgctgtaggacggtgttgacc
tcgaagatcgggggcctcatggccttcgctcagaagaggagcacctgcatcggctgcaaa
gccgtgctcaaaagcgacaccgctgtgtgcgatttctgtaagaagaaggagtctgcactg
taccaaaaagagatcttccacctgaacacactggaggagcgtttctcccgcctgtggact
cagtgccagcggtgccagggctccctccatgaggatgtgctctgtaccagtcgggattgt
cccatcttttacatgaggaagaaggtccagaaagatttggatgaccagagcagtctggtg
aatcgcttcggatggtga
DBGET
integrated database retrieval system
