Trematomus bernacchii (emerald rockcod): 117493999
Help
Entry
117493999 CDS
T09643
Name
(RefSeq) dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04010
MAPK signaling pathway
tben04020
Calcium signaling pathway
tben04260
Cardiac muscle contraction
tben04261
Adrenergic signaling in cardiomyocytes
tben04270
Vascular smooth muscle contraction
tben04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117493999
04020 Calcium signaling pathway
117493999
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
117493999
09153 Circulatory system
04260 Cardiac muscle contraction
117493999
04261 Adrenergic signaling in cardiomyocytes
117493999
04270 Vascular smooth muscle contraction
117493999
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117493999
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117493999
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
117493999
NCBI-ProteinID:
XP_034000510
LinkDB
All DBs
Position
Unknown
AA seq
1668 aa
AA seq
DB search
MAESSGSPLSSYIMDEETLKRKQKEKLKKLMATGGNPRPARSLLFLTLRNPFRKACISIV
EWKPFEIIILLAIFANCVALAVYLPMPEEDSNNTNSNLESLEYIFLIIFSIECFLKIVAY
GFLFHADAYLRNCWNILDFVCVSVGLFTVVVDAINHISGVEAPVGEKGGGFDMKALRAFR
VLRPLRLVSGVPSLQVVMNSILKSMLPLFHITLLVLFMVTIYSIMGLELFKCKMHKTCYY
ISTNIIATVENEKPSPCAQAGNGRRCTINGTECRAGWPGPNQGITHFDNLGFSMLTVYQC
ITTQGWTDVLYWVNDAIGMEWPWIFFTSLILVGSFFVLNLVLGVLSGEFTKEREKAKSRG
EFQKLRETQQLDEDLKGYMEWITQAEVMDMDQEGQGLLTTENGGSESGSVGKMDTMQLII
YYYKLARKWNRWLRRKCRVYVKSNLFYRWVILLVFLNTMAIATEHHKQSQSLTNWQDNSN
KVLLSMFALEMFMKMYALGLPSYFMSLFNRFDCFVVSTGILELILVHMGVMSVMGISVLR
CIRLLRLLKVSRYWKSLSNLVASLLNSVRSIACLLLLLFLFIVIFSLLGMQVFGGKFNFP
NQAKPRSTFDSFPQALITVFQILTGEDWNAVMYDGINAHGGPTMPGILVSIYFIILFVCG
NFILLNVFLAIAVDNLAEAESLTLAQKEKAEEKERKKALRANMPDKATEEKANLAKKLAD
QRAKGVEVIPTTAKLKIDEFESNVNEIKDPFPPADFPGDDEEEDPEIPESPRPRPMADLQ
LKEEAVPMPEASSFFIFGPQNKFRKLCHRIINATTFTNIILLFILLSSVSLAAEDPIDPM
SFRNQVLAYADIVFTSVFTAEIVLKMTTYGAILHKGSFCRNSFNILDLLVVSVSLLSMGM
ESSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIKTIGNIVLVTMLLDFMFACI
GVQLFKGKFYECTDPDKMTEETCKGWYIRYQEGALHEMEVHERQWTNSGLNFDNILNGML
ALFTISTFEGWPKILYKAIDSNLEDKGPVYNNRVAISIFFIFYLILIAFFMMNIFVGFVI
VTFQEQGEQEYKNCELDKNQRQCVQYALKARPLRCYIPKNPYQYQVWYVVTSCYFEYLMF
LLIMFNTMCLGMQHCNQSDHVTHLSDMLNIIFTVLFTVEMILKLMAFKAKGYFGDPWNVF
DFIIVIGSVVDVMLSEIDAALASSGGLYCLHGCSAVDPMQAIASSENMSVSVTFFRLFRV
MRLVKLLNRSEGIRNLLWTFIKSLQALPYVGLLILMLFFIYAVVGMQIFGKIALVDGTYI
NRNNNFQTFPQAVLLLFRCATGEAWHEVMLACMYEKKCDPKSDYLPGEEYTCGSNFAIIY
FMSFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPQHLDEFKNIWAEYDPEATGRIKHL
DVVTLLRRIPPPLGFGKFCPHRIACKRLVSMNMPLNSDGTVTFNATLFALVRTALKIKTE
GNFEQANEELRAIIKKIWKRTSMKLLDQVIPPIGDDEVTVGKFYATFLIQDYFRKMKKRQ
EEYYGCQPTKKSASSGIQAGLRNIEEEAAPELHRAISGDLVTEEEMEGAADEEGIFRRHG
SLFGTSDPFSAESEAANGSQATSQRPLQRAGVNNSLNITNGNTSPSLY
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atggcagagagcagcggttcaccattgtcatcctacatcatggatgaggaaactctgaag
agaaaacaaaaagagaagctgaagaagctgatggctacaggaggcaacccaaggcctgca
cgctctctcctcttcctgacactgaggaatcccttccgcaaggcctgcatcagcattgtg
gagtggaaaccatttgaaatcataatcctactggcaatctttgccaactgcgtggccctg
gccgtgtacctgcccatgcccgaggaagacagcaacaacaccaacagcaatctggaaagc
ctcgagtacatcttcctcatcatcttctcaatagaatgttttctgaagatcgttgcctat
ggatttctttttcatgcagatgcatacttaagaaactgctggaacattttggactttgta
tgtgtatcagttggcttgttcactgtggtagtggatgccatcaaccacatcagtggggtg
gaggctccggtcggagagaaaggtggaggctttgacatgaaagctctgcgggccttcagg
gtcctcagacctcttcggctggtttctggagttccgagtcttcaagtggtgatgaactcc
atactgaagtccatgctgcccctctttcacatcaccctacttgtcctcttcatggtcacc
atttactccattatgggattggagctcttcaaatgcaaaatgcacaagacctgctactac
ataagcacaaatatcatcgctacagtggagaatgagaagccgtctccatgtgcccaggca
ggaaatggccggcgttgtaccatcaacggcacggagtgtcgagctgggtggccaggccca
aaccagggaatcacacactttgacaaccttggcttttccatgctgaccgtctaccagtgc
atcaccacacaaggatggactgatgtcctctactgggtaaatgatgctataggaatggaa
tggccatggatctttttcacctcactaatcctggttggctccttctttgtgctcaacctg
gttcttggagtgctcagcggtgagttcacaaaagagcgagagaaggctaagtcacgtgga
gagtttcagaagttgagggaaacccagcagctggatgaggaccttaagggctatatggaa
tggataactcaagctgaggtgatggacatggaccaggagggacagggtctgctcaccaca
gaaaatggaggatcagagagcggaagtgtcggcaaaatggacaccatgcagcttatcatc
tattactataagcttgctcgtaagtggaaccgttggttacggcgtaaatgcagagtgtat
gtgaagtccaacctgttctaccggtgggtgatcctgctggttttccttaacacaatggcc
atcgcaacggagcaccacaaacagtcccagagtctcaccaactggcaagacaattccaat
aaagtactgctgtctatgtttgcgctggagatgttcatgaagatgtacgctctgggtttg
ccctcttacttcatgtctctcttcaaccgctttgactgctttgtggtgtccactggcatc
ctggagctgatcctggtccacatgggcgtcatgtcagtgatgggcatctctgtgctgcgc
tgcatacgcctgctccgcctgctcaaagtctcccgatactggaagtctctcagtaatctg
gtggcttccctcttgaactcggtccgttccatcgcctgcttgctgctgctcctcttcctt
ttcatcgtcatcttctccctgctgggtatgcaggtgtttggagggaagtttaactttccc
aaccaagccaagccccgcagcacgtttgacagcttccctcaggccctcattactgtgttc
cagatcctgacaggagaggactggaatgctgtaatgtacgatggcattaacgctcatgga
ggacccaccatgcctggcatcttagtcagcatctacttcatcatcctctttgtctgtgga
aatttcattcttctaaatgtcttcctggccattgctgttgataatttggcggaggctgag
tctctgactctggcacagaaagagaaggcggaggaaaaagaacgtaagaaagcactgagg
gccaacatgcctgataaggcaacagaggagaaagcaaatctcgcaaagaagttggccgac
caaagggccaagggcgtagaggtcatccccacgactgccaagctcaaaatcgacgagttt
gagtctaacgtcaatgagattaaagaccctttccctccagcagactttcctggtgatgat
gaggaggaggaccctgagatcccagaaagccctagacctcgtccgatggcagatctgcag
ctgaaggaggaagcagtgccgatgccagaagccagctcattttttatctttggacctcag
aacaagttccggaagctctgccatcgtataatcaatgcaacgactttcaccaacatcatc
ctcctcttcatcctcctgtcgtctgtgtctttagctgctgaagatcccatcgaccccatg
tcctttagaaaccaggtgttggcctatgctgatatagtcttcacttcggtgttcacagcg
gaaattgtgctcaagatgacaacatatggtgccattcttcacaaagggtctttctgtcgg
aactctttcaacatcttggatcttctggtggtcagtgtatctctcctctcaatgggcatg
gaatccagtgccatctcagtggtgaagattctcagagtgttaagggtacttcgaccgcta
agggccattaacagagccaagggactcaagcatgttgtccagtgtgtgtttgttgctatc
aagaccattggaaacattgtgctggtcaccatgctgctggacttcatgtttgcctgcatt
ggagtccaacttttcaaaggcaagttctatgagtgcacggatcctgacaaaatgactgag
gaaacatgcaaaggctggtatataaggtaccaggaaggagcactccatgaaatggaggtc
catgagaggcaatggaccaactcaggactaaactttgacaacatcctcaacggaatgctc
gccctcttcaccatttctacctttgaaggatggccaaagatattatataaagccattgat
tccaacttagaagataaaggtccagtgtacaacaaccgagtggccatctcgatcttcttc
atcttctacctcatccttatcgcctttttcatgatgaatatatttgttggcttcgtcatc
gtcaccttccaggagcaaggagagcaggagtataagaactgtgagctagacaaaaaccag
cgccagtgcgtgcagtatgctctgaaggccagacctctgcgatgttatattcctaagaac
ccctaccagtatcaggtgtggtacgtggtcacctcctgctactttgagtacctcatgttc
ctcctgatcatgttcaacaccatgtgcctggggatgcagcactgcaaccagtccgaccat
gtgacccacctgtctgacatgctgaacatcatcttcactgtgctcttcactgtagaaatg
atccttaaacttatggccttcaaagcaaagggttattttggagacccctggaatgtcttt
gactttatcattgtcattggaagtgtggtggacgtgatgctgagtgaaattgatgcagct
ctggcctcctctggaggactttactgtctccatggctgttctgcagtggatccaatgcaa
gcaattgcgtcttctgaaaacatgagcgtgtcagtcacattcttcagactgtttcgggtc
atgcgcctagtgaaacttttgaatcgctctgaagggattcggaatcttctgtggaccttc
atcaaatcccttcaggctctcccctatgtgggcctgcttattctcatgctattctttata
tacgctgtggttggaatgcagatctttggaaagattgcgttggttgacggcacatacatc
aacaggaacaacaatttccagacatttcctcaggctgtgctgctgttattcagatgtgcg
acaggggaggcttggcatgaagtgatgttagcatgtatgtacgagaagaagtgcgacccc
aagtctgattacctgcccggggaggagtacacatgtggatcaaactttgccatcatctac
ttcatgagtttctacatgctgtgtgcctttctgatcatcaacctgtttgtggctgtcatc
atggataactttgactacttgacacgtgattggtccatccttggcccccagcacttggat
gagttcaagaacatatgggcagaatatgatcctgaggccactgggcgtattaagcacctt
gatgtagtgacactcctacggagaatacctcctcctctaggctttggcaagttttgtcct
catcgtatcgcctgcaagaggttggtctccatgaacatgcctctcaacagtgatggaaca
gtcaccttcaacgccacactttttgctctggtcagaacggcactgaaaataaagacagaa
ggtaattttgaacaagcaaacgaggaactgagggcaattatcaagaagatctggaagcgc
accagtatgaagcttctggaccaagtcatcccacctataggagatgatgaggtgacagtg
ggaaagttctacgccaccttcctgatccaggattatttcaggaaaatgaagaagagacag
gaagagtactatgggtgccagcccaccaagaaaagtgcttcttctgggatacaggcaggg
ttgaggaacatagaggaggaggcggctccagagctccatcgggccatctctggagacctt
gtgactgaagaggagatggagggggctgctgacgaagagggcatcttcaggagacatgga
agtctttttggaacctcagaccctttctctgcagagagtgaggcagccaatggcagccag
gccaccagccagcggcccctgcagagggcaggggtcaacaacagtttgaacatcaccaac
ggcaacacaagtcccagcctttattaa
DBGET
integrated database retrieval system
