Trematomus bernacchii (emerald rockcod): 117494195
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Entry
117494195 CDS
T09643
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117494195 (clstn1)
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Cadherin related
117494195 (clstn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
Toxin_R_bind_N
EphA2_TM
PFF1_TM
DUF7502
FAM176
Motif
Other DBs
NCBI-GeneID:
117494195
NCBI-ProteinID:
XP_034000860
LinkDB
All DBs
Position
Unknown
AA seq
981 aa
AA seq
DB search
MRVRGNTPFASAVGLVLGLLCAVEAAKVNKHKPWIETTYHGIVTENDDKVLLDPPLIALD
KDAPLRYAESFEVTLTEEGEICGFRIHGQNVPFEAVVLDKSTGEGVLRAKDKLDCELQKE
HTFTIQAYDCGEGPDGTNMKKSHKATVHIQVNDINEYAPVFKEKSYKATVIEGKKYDSIL
KVEAVDADCSFQFSQICNYEIVTPDVPFTVDKDGFIKNTEKLSYGKERMYKLTVTAYDCG
KNRASEDVLVKISVKPTCKPSWQGFNKRIEYEPGTGSLALFPSMHLETCDEPITSIRANI
ELETNHIGKGCDRDTYSEKSLHKLCGASTGTVELLPAPSSAANWTVGLPTDNGHDSDQVF
EFNGTQAIKVPEGMVSTSLKEPFTISVWMRHGPGAHEKETILCNSDKTEMNRHHYSLYVH
NCRLIMLLRQDPSEAENYKPAEFHWKLDQACDKEWHHYVLNIEFPTVSLFVDGTTFEPFL
VTEDYPLHSSKIESQLTIGACWQDNSGHDNDTESVSEPTSGGNAKMAQFFRGNLAGLMIR
SGKLENKKVIDCLYTCKEGLDVQLPEEIASAVKVEFNPNQSSLTVEGDDIDAFDKVMQHV
SYLNSRQFPTPGIRHLRISTTVKCFNEESCVSVPDAEGYVMVLQPEEPKISLSGIDHFAR
SAAEFESQEGVTLFPELRIVSTITREVEADAESEAAEGTDDDPTVQETVVSEEIMHNLDT
CEVSVVGDELDGEHEGLEVDMSQLQQHSLEMSSSNLGLVITGVNTMANYEQVLHLIRYKN
WHTEALFDRKFKLVCSELNGRYISNDFKVEVNVIHTANPVEQANNAMVQPNFINPVHHAS
LDLSGHNLVNAHQASVVPSAATIVIVVCVSFLVFMIILGVFRVRAAHQGTMRDQESGKEN
EMDWDDSALTITVNPMETYEDQHSSEEEEEEEEESEDGEEEDDITSAESESSEDEEGAEP
EDQQAASRQQQLEWDDSTLTY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtccgagggaatacaccatttgcatccgctgtcggactggtcctcggactatta
tgtgcggtggaggcagctaaagtcaataagcacaaaccatggatcgagacgacgtaccac
gggatcgtaacggaaaacgatgataaagtactgctggaccctcctctaattgcactggac
aaggatgctcctctacgctacgcagagagttttgaggtgactctcactgaagaaggtgag
atttgcggcttcaggattcatgggcagaatgtccccttcgaggcagtggtcctggacaag
tccactggcgagggggtcctccgggccaaggacaagctggactgtgagctgcagaaggag
cacaccttcaccatccaagcctacgactgtggagagggtcccgatggcaccaacatgaag
aaatcccacaaggccaccgtccacatccaggtaaacgacatcaacgagtatgcaccggtg
ttcaaggagaagtcctacaaagccaccgttatcgagggaaagaagtacgacagcatcctg
aaggtggaggcagtggacgccgactgctctttccagttcagtcaaatctgcaactacgag
atcgtcacccctgatgtgcccttcaccgtcgacaaagatggttttatcaagaacacagag
aaactgagctacggcaaggagcgcatgtacaagctgactgtgaccgcctacgattgtgga
aagaaccgtgcctccgaggatgttctggtgaagatcagcgtcaagcccacctgcaaaccc
agctggcaaggcttcaataagaggattgaatatgagcctggcacaggcagcctggccctt
ttccccagcatgcacttggagacctgtgatgagccaatcacgtccattcgagccaacatt
gaactggaaaccaaccatattggaaagggctgtgaccgtgatacgtactctgagaagtca
ctgcacaagctgtgcggagccagcaccggcaccgtggagcttctgcctgcacccagcagt
gccgccaactggaccgtcggcctgcccacagacaacgggcacgacagcgaccaggtgttt
gagtttaacggcactcaggccatcaaggttcccgaaggcatggtgagcaccagcctgaag
gagcccttcaccatctctgtgtggatgagacacggccccggcgcccacgagaaggagacc
atcctctgcaactctgacaagacagagatgaacagacaccactactcgctgtacgtccac
aactgcaggctcatcatgctcctccgccaggacccatcagaggccgagaactacaaacca
gccgagttccactggaagctcgaccaggcttgtgacaaagagtggcatcactatgtgctg
aatatcgagttccccactgtgtctctgtttgtggatgggaccaccttcgagcccttcctg
gtcacagaggactacccactgcactcctccaagatcgaatcccagctcaccatcggtgcc
tgctggcaagacaactcaggacatgacaatgacactgagtcagtctctgagcccacctca
ggtggaaatgctaagatggctcagtttttccggggcaacctagcggggctgatgatccgc
tctggcaagctggagaacaagaaggtgatcgactgtttgtacacctgcaaggaaggactg
gatgtgcagctgcctgaggagatagcttcagctgtcaaggttgagtttaaccccaaccag
tcctctctgaccgtggagggagacgacatcgatgcctttgacaaggtcatgcagcacgtc
tcctacctgaactctcgccagtttcccacacctggtatcaggcaccttcgcatctccacc
accgtcaaatgcttcaacgaggagtcctgcgtatcagtgccagatgctgaaggttatgtg
atggtgctgcagcccgaggagccaaagatcagcctgagcgggatcgatcactttgcccgc
agcgccgcagaattcgagagccaggaaggtgtgacgctgttccccgagctacgcatcgtg
agcaccatcacccgcgaggtggaggctgatgctgaatctgaagcagcagagggaactgat
gatgaccctacagtccaagagaccgtggtgtcagaggagatcatgcacaacctggacacc
tgtgaagtgagcgtggtgggagacgagctggacggggagcacgagggtctggaggtggac
atgtctcagctgcagcagcacagcctggagatgagctcctctaacctgggcctcgtcatc
accggtgtgaacaccatggcaaactacgagcaggtcctgcatctcatccgttacaagaac
tggcacacagaggctctctttgataggaaattcaaactggtctgctctgaactgaacggc
cgctacatcagcaacgacttcaaggtcgaggttaatgtaatccacacagccaatcctgtg
gagcaggccaacaacgccatggtgcagcccaacttcatcaaccctgtgcatcacgcctct
ctggatctgtccgggcacaacctggtcaacgctcaccaggcctcagtcgttcccagcgca
gccaccattgtcatcgtggtgtgcgttagcttcctggtgtttatgatcatcctgggcgtg
ttccgcgtccgagccgcacaccagggcaccatgagggaccaggagagcggcaaggagaac
gagatggactgggacgactcagccctcaccatcaccgtcaaccccatggagacttacgag
gaccagcacagcagcgaggaggaggaggaagaggaggaggagagcgaggacggagaggag
gaagatgacatcacgagtgctgagtcagagagcagcgaagacgaggagggggcagagccg
gaggaccagcaggcggccagcagacagcagcagctggagtgggacgactccaccctcacc
tactaa
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