Trematomus bernacchii (emerald rockcod): 117494310 Help Entry 117494310         CDS       T09643                                  Name (RefSeq) collagen alpha-1(XX) chain   KO K24357   collagen type XX alpha Organism tben  Trematomus bernacchii (emerald rockcod) SSDB OrthologParalogGFIT Motif Pfam:  fn3 VWA Collagen Pur_ac_phosph_N Ig_DSCAM-DSCAML_C VWA_2 Motif Other DBs NCBI-GeneID:  117494310 NCBI-ProteinID:  XP_034001045 LinkDB All DBs Position Unknown AA seq 1588 aa AA seqDB search MSPHLHAPSSSLWLMLCFLLSVFLLLSPGVYGQGRLKLTVLSEDRLQMKWKEADGPVQGY KVRVKPISEVPQPELMLTTTRGRATVAGLDSSQEYALQVLVLNGTTERLLAKRRFTMEGL RDEEMIRSGSREQKKKILPGGSGSGELDDVTEALIGLPTVLYPDPTTNPAAAAPTTEPPA IETPSQLPDEAPENTPKEKRKRKNGKERDRSKGENKEEQGTTQGKAAKEKPRKTPTPTQP VTGMSPRKPFECETDAAADIVLLVDGSWSIGRTNFRRVRDFLESLMTPFNIGPDHIQIGL TQYSGDPRTEWHLNNFTTKEQLLEAVRNFRYKGGNTFTGQALLHVMEENMRPEAGARSAT PFFLVLLTDGKSQDDAIAAAGRLKNAGVEIIAVGVKNADEAELRQVASEPVDLNVYNVND FPLLSKLVSRLVHILCGRIEDRGISKRMEPGPTVDPALSYPSPSDLRFSQLGSREVQLHW TNPAEAVQQFRVVYHSAEGQSPQEVVLGGSESTVLLEGLSSQTLYHVSIFPVYENNVGLA LRGTVTTLPLATPANLEVTPSSYSTLQVSWGAAPGATQYMILYSALSHGEPDDAKEVSTG SLFLSALSEKFSAEQTVVGLTGLLPATDYSVTLYALYEDDPSDPVTAVATTFPLPPPMSV EFPMATHSMLKVSWVPGAGDVPSHRITYSTNHGSDIKQTQWRCRTSPLCPDIWFQSSLTT HKACLQHSPVTSPHVPSPSDLRVTNFSDSDITVRWQAGADDVVSYLIKWISLSGGDLRQL RVSGESEGAILEGVEDDKEYQISLSALYGDGAQSEAVAIRYSTLSGGGPSSISVTEETAV SMVVSWVPPNAHVLQYRVTYTALTAPESQDSTVLVPGDEKRVMLESLQPDTRYSILVTAE YRNREGGSGSAQGKTTSLRVSSVSVVRSDQSSICVSWRPVSAVDGYRIVIQSVKDKQTKE GAVAESSSSHCFTGLEPETLYRISVHSLLGSAEGAAVSILHPTATAPARLPIHRRMYPIH NEVCPEVTIRNSIVKGFDMMEAFGLTRTAHSSVEGVAAEPFVFNTLPAYTVFRDIQLTQN TKFIHPAGLSPEHTISIAFRVLQETPREPFALWQLTDNDFQPKMGVVLDPTTKHLVYFSL DYRGEVQELTFDQRQVHRLFYGSFHKIHLTVSQVSVSLSVDCQRVGERPARPLGSLPTDG FEMLGKLVKTRGPKSGSAPFQLQSFEIVCNTTWAFEDTCCDLPAMRDEESCPAPAYTCTC SSDVPGAAGSPGPTGKPGTRGEKGEKGDPGQKGEVGPAGKPGFEGGLGALGSIGPRGIAV QGKVGPPGARGGKGDPGRTGIQGLPGPQGSKGEQGVPGPLGIRGLEGNIGGPGLTGPRGI QGRPGHPGPMGERGLSGLVGPSGLPGGKGERGEKGEAQSMAMIFQLVTQACEQLVHKEVL KLDMFINEMSRKPAPIEEPVGPPGEPGIPGPKGPPGGRGNQGNVGSRGRPGRPGYPGEQG GRGMLGAKGDAGPNVQGPTGIKGFAGPLGEAKLGDPGSKGDDGKSGPQGISGPPGQPGEM GPPGLCDNSGGCNRAPQQTEDPYYGYQP NT seq 4767 nt NT seq  +upstreamnt  +downstreamnt atgtctcctcacctccatgctccatcatcatctctctggctcatgctgtgtttcctgctc agtgtcttcctgctgctgtccccaggggtctatggccaaggtcgtcttaagctgacggtt ctgtctgaggacagactgcagatgaaatggaaggaggccgacggacctgttcagggctac aaagtcagagtgaaacccatctcagaggtgccacagccggagctgatgctaaccaccaca cggggccgggccacggtggcaggactggactccagtcaggaatacgccctccaagtcctc gtgctcaatgggacgacggagaggcttctcgcaaaacgcagattcactatggagggtctg cgggatgaggaaatgatccgcagcggtagtcgagagcagaagaagaagatattaccaggc gggtcggggtctggagagctggacgatgtgacggaggctcttattggactgccaacagtt ctgtatccggaccccaccaccaaccccgctgctgctgctccgactacagagcccccagct atagaaaccccctctcagctccctgatgaggcgccagagaatacccccaaagagaagagg aagagaaagaatggaaaagagcgggatcgttccaagggggagaataaggaggagcagggg acgacacagggcaaagcagccaaggagaaaccccggaaaacacccacccctacccaacca gtgacagggatgtctccaaggaaaccatttgagtgtgagaccgacgcagctgcggacatc gtgttgttggtggacggctcctggagtatcgggcgtaccaacttcagacgggttcgagac ttcttggagagcctgatgacacccttcaacatcgggccggaccacattcagatcggtctg acccagtacagcggagacccccgcacagagtggcatctcaacaacttcactaccaaagag cagcttttggaggcagtgaggaatttcagatataagggtggaaacacatttacaggccag gcgctgctccatgtcatggaggagaacatgaggccagaggcaggcgcaaggtcagctaca ccttttttcctggtcttgttgaccgatggtaaatctcaggatgatgccattgctgcggca ggccgcctgaagaatgccggcgtggagatcatcgctgtaggtgtaaagaatgccgatgag gccgagttgagacaagtagcgtcggagcctgtggatctgaacgtctacaatgtcaatgac ttcccgctgctcagcaaactagtgtcacgactggtccacatcctgtgtgggaggatagag gaccgcggcatctcaaaacgaatggagcctgggcccacagtagacccagccctctcctac ccaagtccttctgatctccgcttctctcagctgggctccagagaagtgcagcttcactgg accaatcctgctgaagctgtccaacagttcagagtggtctaccacagcgctgagggccag agtccacaggaggtggtgttgggcggctcagagtccactgtgctgctggaaggcctctcc tctcagacactgtaccacgtgtctatcttccctgtgtatgaaaacaatgttggcctggcc ctcagaggaaccgtcaccacattgcccctggccacgcctgccaacctggaggtgactcct tcctcttacagcaccctgcaggtgagctggggtgcagcgcccggtgccacacagtacatg atcctgtactcagcactcagccacggagagcctgacgacgccaaggaggtgagcactgga tctctctttctctctgcgctgagtgaaaaattcagtgcagagcagacggtggtggggctg acggggctactcccggccacagactactctgtcactctttacgctctgtacgaggacgat cccagcgatcctgtcactgctgttgccaccacattccccctcccaccaccaatgagtgtt gagttcccgatggccacccacagtatgctgaaggtgagctgggtgcctggagcaggggac gtccccagccacagaatcacatacagcaccaaccacggcagtgacattaagcagactcag tggcggtgcagaacctctcctctctgtccagatatctggtttcagtccagtctaactacc cacaaggcctgtctgcagcactcaccagtaacgtcaccacacgtgccttccccatcagac ctcagggtgactaatttctccgacagtgacatcactgtgcgctggcaggctggggctgat gatgtcgtctcttacctcatcaagtggatctccctcagtggaggagacctgagacagctg agggtgagtggtgagagtgaaggggcgatcctggagggggtggaggacgataaggaatac caaatctctctgtctgcactctatggagatggagctcagagtgaagcagtggccatacgc tacagcacattgtctggtggaggtccatccagcatctcagtgaccgaggagacagcagtc agcatggtggtgagctgggtgcctcccaacgctcacgtcctgcagtaccgtgtaacttac accgcactgactgcacctgagagccaggacagcactgtgttggtcccaggtgatgagaaa cgggtgatgctcgagtcattacagccagacacacgttacagcatcctggtcacagcagag taccgcaacagagaaggaggcagcggctcagctcagggcaaaaccaccagtctgcgggtc agcagtgtgagtgtggtgcgctcagaccagtccagtatctgtgtgtcctggagacctgtg tctgctgtggatggataccgtattgtcatccagtctgtcaaagacaagcaaacaaaggag ggggctgtggcagagtccagcagcagtcactgcttcactggtctggaaccagagactctg tatcgcatcagcgtgcactcactgctcggctcagcagagggcgctgccgtctccatcctc cacccaacagccacagctcctgccagacttcccatccaccgccggatgtaccccatacac aacgaagtctgccctgaagtcaccatcagaaacagcattgttaaaggattcgacatgatg gaagccttcggtctgactcggacagctcactcctctgtggagggtgtagctgccgagcct tttgtcttcaacaccctccccgcctacactgtgttcagagacatccagctgacacagaac accaagtttatccaccctgcaggtttgtctccagaacacaccatcagcatcgccttccgc gtgctgcaggaaactcccagagagcccttcgccctctggcagctcactgacaacgacttc cagcccaagatgggagtggtgctcgaccctacaactaagcacctggtgtacttcagcctg gactacagaggagaggtgcaggagctgacctttgaccagcggcaggtccacagactgttc tatggcagttttcacaagatccacctgactgtcagccaggtgagcgtgtccctgtctgtg gactgtcagcgtgtgggggagaggccggcccgccctctaggcagcctgcccaccgacggc tttgagatgctgggaaaactggtgaagacccgaggacccaaaagtggctctgctccgttc cagctgcaatcctttgagatcgtctgtaacaccacgtgggctttcgaggacacctgctgt gacctgcctgcaatgagagatgaggagagctgtccggccccggcgtacacctgtacctgt tcctctgacgtccccggagctgccggctcccccggaccaactggaaagccaggtactcgt ggtgagaaaggtgaaaagggcgacccaggtcaaaagggggaggtgggtcctgcaggaaag cctggatttgagggaggtctcggagccctggggagcatagggccccgaggcattgctgtg cagggcaaagtgggtccacctggtgcaagagggggaaagggagaccctgggagaacaggg atccagggtttaccaggacctcaaggttcaaagggggagcagggggttcccggccctctg ggtattcgggggcttgaaggaaacatcggtggacccggcctgactggaccaaggggtatc caaggaaggccaggacacccagggccgatgggtgaaagggggctctcaggactggtaggc ccttcgggtctgccagggggtaaaggggagcgaggagagaagggagaagctcagtctatg gccatgatcttccaactggtcacacaggcctgtgagcagctagtgcataaggaggtgctg aagctcgacatgttcattaatgagatgagtcggaagccagctccaattgaggagccagtg gggccccccggggaacctggtataccggggcctaagggcccaccaggcggcaggggcaac caggggaatgtcggctcgagggggagacctggaaggccaggatatcccggagagcaggga ggaagaggcatgctaggggccaagggggatgcagggccaaatgtccaggggcccacgggg atcaaaggatttgcaggtcctctgggtgaggctaagctgggtgacccaggttctaaagga gatgatggtaaatcaggaccccaggggatcagcggaccaccaggacagcccggagagatg ggacccccgggtctgtgcgacaacagcggaggctgcaacagagccccccagcaaacagaa gacccctattacggctaccaaccttga

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