Trematomus bernacchii (emerald rockcod): 117494456
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Entry
117494456 CDS
T09643
Symbol
exosc10
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117494456 (exosc10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117494456 (exosc10)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117494456 (exosc10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Lipase
Motif
Other DBs
NCBI-GeneID:
117494456
NCBI-ProteinID:
XP_034001270
LinkDB
All DBs
Position
Unknown
AA seq
890 aa
AA seq
DB search
MDSSKRKDSTNSVFADPNSENNDEEKEDLCPGFKDADAFVKYGLGAVLSATKASASLPQT
GDEYDFYRSFPGFQEFCERQGDKLLQGMSQIMQHHGCRSHMRDRNKLTGLEERFDLVVDS
NDVILERVGILLDEADGVNRSQQPVLPAGFQAPKIVVSSWNRKGSGSGSRSETFRLLHAK
NIARPQLKFRGKVDNSNTPFVPKIFIKPNAVKPLPSYFTNKQIRKERPEDLDVPAALADF
IHQQRIQEHVEDMFSHPYQYELDHFTLTESLLSKPQPLMYKPLDETKCSFIETLEDLVAL
NEKLCKLSEFAVDLEHHSYRSFLGLTCLMQISTRDEDFIIDTIELRGELYILNEAFTDPA
IVKIFHGADSDMEWLQRDLGLYVVNLFDTHQASRALNLARHSLDHLLKHYCTVESDKRYQ
LADWRIRPLPEEMVQYARSDTHFLPYIYDCVREQLLDFNHGQPGLLQSVWNKSKDISLKK
YVKPIFTEESYLELQRKQKRSFNTQQLTAFRLLFAWRDKLARQEDESTGFVLPTHMMNKI
SEELPKEPQGIIACCNPVPPLVRQQVNELNLLVQQAREMPLLKAEIAAQKKKGLTPIKKA
DVTLFGPHDTSRVSESDFHNCSTDEMPIKQGMLFAEDEAKMDVDEENTSGLVAKAKITQF
EEPETQNDPESLPVGQMKARRIIESFENPFRMYLPSNNVHISKNAKFDPSSKIFEISKRW
KLQSIEQQQKELDAKKKAKEEKKELTKKVADERKKAKQTYQESLQNVPTVREQAAESVKP
GTKRERVASDVGESTPKPSKKLLKSAEKPEKTEPPPAEPFKPFDYRKSDLKVFAGNKPTD
NTQFDPNRQSNDFRKKKKPKGQKSNSGGGKSMSYMAGKSDRGFNHNWPKR
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggattcttctaagagaaaagactccactaacagtgtctttgcagacccaaattccgaa
aacaacgacgaggaaaaggaagacctgtgtcccggttttaaagacgcggatgcttttgtt
aaatatggattgggtgcggtgttatctgccaccaaggcatccgccagtttgcctcagact
ggagatgaatatgatttctatcggagcttcccgggcttccaggagttctgtgaaagacaa
ggagataagctcctgcagggcatgagtcagataatgcagcaccatggctgcagatctcac
atgagggacaggaacaagctgacagggctggaggagaggttcgacttggtcgtggactcg
aacgacgttatcctcgaaagagtggggattcttcttgatgaagctgatggggtgaacagg
agccagcagcctgtcctgcccgcaggctttcaggctcccaagattgttgtttccagctgg
aatcgcaagggttcaggctccggcagtcgttctgagacgttccgtctgctccatgccaag
aatattgcgaggcctcagctgaaattcaggggaaaagtcgacaacagcaacacaccattt
gttcccaagatcttcatcaagcctaatgcagtaaagcctcttccctcctatttcaccaac
aaacaaatccgtaaagagagacctgaggaccttgatgtcccggctgccctggctgacttc
attcaccagcagagaattcaggaacatgttgaagacatgttttcccacccataccaatat
gaactggatcatttcacattaacagaaagccttctttctaagccacaaccgctgatgtac
aaacccctggatgagaccaaatgctccttcattgaaacattggaggatctggtggctctg
aatgagaagctttgcaaattgtctgaatttgcagtggatcttgagcaccactcctacagg
agcttcctcggcctcacctgcctgatgcagatctccaccagagacgaggacttcatcatc
gacaccattgagctccggggagagttgtacattctcaacgaggcattcactgaccctgct
attgtcaagatatttcacggcgctgactctgacatggagtggctccagagggacttaggc
ttgtatgtcgtcaacctttttgacacgcatcaggccagccgagctctgaacttggccaga
cattccctcgaccacctgctcaaacactactgcaccgtggagtcagacaaacgctaccag
ctggctgactggaggattcgccccttgccagaggagatggtgcagtatgctcggtcagac
acacacttcctgccttacatctacgactgtgtgcgggaacagctgttggactttaaccac
gggcagcccggcctgctgcagagtgtctggaacaagagcaaagacatctctctgaagaaa
tatgtgaagcctatattcacagaggagtcatatttggagctgcagaggaagcagaaaagg
tcctttaacacccagcagctcactgccttcagactgctgtttgcctggagggacaagctg
gccaggcaggaagatgaaagcaccggattcgttctgcccactcacatgatgaacaagata
tctgaggagctgccaaaagagccacagggcatcattgcctgctgtaaccctgtacccccg
ctggtgaggcagcaggtcaatgagctgaatttgttagtgcagcaagccagagaaatgcct
ctcctcaaggctgagattgcagctcaaaagaagaaaggactcacacccataaaaaaggct
gacgtcacgttgtttggtcctcatgatacatccagggtctctgagagcgatttccacaac
tgttcgactgatgaaatgcccatcaaacaagggatgctcttcgcagaggatgaggccaaa
atggatgttgatgaagaaaacacaagtggccttgtagcaaaagctaaaatcacacagttt
gaggagccggaaacacagaatgacccagaatcccttcctgtgggtcaaatgaaagccaga
cgcatcattgagtcttttgaaaaccctttcagaatgtacttgccctccaacaatgtgcac
atcagcaagaatgccaagtttgacccatcttccaaaatatttgagataagtaaaagatgg
aagctgcagagtattgagcagcaacagaaggagttggatgccaaaaagaaagcaaaggaa
gaaaaaaaggaactcacaaagaaagtggcagatgaaagaaagaaggctaagcagacctac
caggagtctctccagaacgttcccactgttcgcgagcaggcagcggaatctgtaaaaccc
ggaacgaaaagagagagggtcgccagtgacgttggtgagtcgactcccaaaccgagtaag
aagctattgaaatctgcagagaagcccgagaagactgaaccacctccagcagaacccttc
aagccattcgactacagaaagtcagacctcaaagtctttgctggtaacaaaccaacggac
aacactcagttcgatccaaaccggcaatccaatgattttaggaaaaagaaaaaacccaag
ggacaaaaatctaattctggaggtggaaaaagtatgtcgtacatggctgggaaatctgac
agaggattcaaccacaactggcccaaaagataa
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