Trematomus bernacchii (emerald rockcod): 117494533
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Entry
117494533 CDS
T09643
Symbol
scn8aa
Name
(RefSeq) sodium channel, voltage gated, type VIII, alpha subunit a
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
117494533 (scn8aa)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117494533 (scn8aa)
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117494533 (scn8aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
GPHH
HpsJ
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
117494533
NCBI-ProteinID:
XP_034001383
LinkDB
All DBs
Position
Unknown
AA seq
1948 aa
AA seq
DB search
MAAPLIAPPGPDSFKKFTLESLAIIELRINEEKNKKPPKQDSSYRDDDDENKPRPNTDLE
AGRSLPYIYGDIPKGLVAVPLEDLDPYYLNSQKTFIVLNSGKTIFRFSATSALYFINPLN
PFRRVAIKILIHSLFSMIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLVKICA
RGFCIDGFTFLRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTISVIPGLKT
IVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCVFWPINMTKSFDWKDYIL
NDTNYYFLPGQLDALLCGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFGWAFLALFRLM
TQDFWENLYMLTLRAAGKTYMLFFVLVIFVGSFYLVNLILAVVAMAYEEQNQATMEEAIR
KEEEFKAMLDQLKRHQEDVQMAAMATSAGTVSEDAVEDDGGGRLSCSSSEMSKLSSKSAK
ERRNRKKKWRQKEQDKEKGDSEKFVKSESDDGSKRSRFRFPDNRLGRKSSIMNQSLLSIP
GSPFLSRHNSKSSIFSFKGRGKDVGSENEFADDEHSTVEECEERRGSLFSPYRRNSYSGF
HGKRNSTVDCNGVVSLIGRGPGGRLLPEPTTEVEVKKKMSGSLMVSVDQLNTSFGRKERA
NSVMSVITNTLVEELEESQRKCPPCWYKFSNTFLIWECSPNWIKTKEIMNLIVMDPFVDL
AITICIVLNTLFMAMEHYPMTPDFEHMLSVGNLVFTGIFAGEMLFKLMAMDPYYYFQEAW
NCFDGFIVTLSLVELALADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGN
LTLVLAIIVFIFAVVGMQLFGKSYKDCVCKINIECELPRWHMNDFFHSFLIVFRVLCGEW
IETMWDCMEVAGQGMCLLVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEPNNL
QISVKRIKIGIAWFKAKMRIVVASLLKKPQMEDEHKPLDDMYDKKLNCIANHSGVDINRD
LDYAKNGNGTTSGIGSSVGKYMIDEDHMSFIHNPNLTVCVPIAVGESDFENLNTEDFSSE
SENENSKEMDDTSSSEGSTIDIKPDVVEEVVVETVEEYLDPDACWTDGCLAKFKCCVVDI
STGWWKKWWYLRKTCYLIVEHNWFETVIIFMILLSSGALAFEDVYIEQRKTIRIILEYAD
RVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFFIVDVSIVSLVANALGYSDLGPIKSLR
TLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYYC
WNHTAEEYFSVDVVNNKTQCEALISQNFTEVRWRNVKINFDNVGAGYLALLQVATFKGWM
DIMYAAVDSRNVEDQPSYEVNIYMYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKFGG
QDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNPVQGMVFDFVTQQVFDISIMILICLNM
VTMMVETDDQSDETENVLYWVNFIFIFVFTTEFLLKLFALRHYYFTNGWNIFDVVVVILS
IVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKSAKGIRTLLFALMMSLPALFNIGL
LLFLVMFIFSIFGMSNFGYVRHGAGVDDLYNFETFGNSMIILFMITTSAGWDGLLLPILN
YPPDCDPLLENPGTSVKGDCGNPSVGIFFFVMYIIISFLIVVNMYIAIILENFSVATEES
ADPLSEDDFETFYEIWEKFDPTASQFITFAKLADFADTLEHPLRVPKPNAIELIAMDLPM
VSGDRIHCLDILFAFTKRVLGDSGELDMLRQQMEERFVAANPSKVSYEPITTTLRRKQED
VSARIIQNAYRIHLIRRGIIFKRRTFSNNKYENGGTNQEKKESTPSTASLPSYDSVTKPD
KEKQDENKEEWARKEKDKNQKDEWESKC
NT seq
5847 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaccccttattgcaccgccaggacctgatagcttcaagaagtttactttggaa
tctttggcgattattgagctgcgcatcaatgaggagaaaaacaagaagcctcccaagcag
gacagcagctaccgcgacgatgatgacgagaacaagcccagacccaacactgacctggag
gctgggcggagcctgccctacatctacggggacatccctaagggattggtggcggtacca
ctggaggacctggacccatactacctgaattctcagaaaacatttatagtactaaattca
gggaagacaatcttccgttttagtgccacatctgccttgtacttcataaatcctttaaac
ccgtttaggcgagtagctattaaaattttgatacattctcttttcagcatgatcattatg
tgtactattttgaccaactgtatattcatgacctttagtgatcctcctgagtggtcaaaa
caagtagagtacacattcacaggaatttatacatttgagtctcttgtaaaaatctgcgca
cgtggattctgtatagacgggtttacattcctcagagacccatggaactggttggatttc
atggtcatttcgatggcatatataacagagtttgtggacctgggcaatgtatctgcgctg
agaacattcagagttctccgagcattgaaaactatctctgtcattccaggcctgaagacc
attgtgggcgccctgatccagtctgtgaagaagctttcggatgtgatgatcctgaccgtc
ttctgcctgagcgtctttgctctcatcggtctccagctcttcatgggaaacctgcgccac
aagtgtgtgttctggccaatcaacatgaccaagagcttcgattggaaggattacatcctg
aatgataccaactactacttcctgcctggccagttggacgctcttctctgtgggaacagc
tccgactctggccgctgcccggagggctacacatgcatgaaagctgggaggaatccaaac
tacggctacaccagctttgacagcttcggctgggccttcctggctctcttccgcctcatg
acacaggacttctgggaaaacctttacatgctgacgctgagggcggcagggaagacctac
atgctcttctttgtgctggtgatctttgtgggctcgttctacttggtgaatctgatcttg
gctgtggtggccatggcttacgaggagcagaaccaggccaccatggaagaggctattcgg
aaggaggaggaattcaaggccatgctggatcagctcaagagacatcaggaagacgtccag
atggctgccatggcaacctctgcggggacagtgtcagaggacgcggtagaggacgatgga
ggagggcgtctgtcatgcagttcctctgagatgtcaaagctcagctccaagagtgcaaaa
gagcggcgcaatcgtaagaagaagtggcggcagaaagagcaggacaaggagaaaggcgac
agcgagaagtttgtcaagtcagagtcggatgacggcagcaagaggagccgattccggttc
cctgataatcgcctcggtcgaaagtcttccattatgaaccagtccctcctcagtataccc
ggctcgcctttcctgtcccgccacaacagcaagagcagcatcttcagcttcaagggccgt
ggtaaggacgtgggctcagagaacgagtttgcagacgacgagcacagcacggtggaggag
tgtgaggagcgccggggctcgctgttcagcccctatcgacggaacagctacagcggcttc
cacgggaagaggaacagcacggtggactgcaacggcgttgtgtcgctcatcggccgtggg
cccggtggacgccttctgcctgagccgactactgaggttgaggtgaagaagaaaatgtcg
ggctccctgatggtgtctgtggaccagctcaatacctcctttgggcggaaagagcgggcc
aacagtgtcatgagcgtcattaccaacacactagtggaggaactggaggagtctcagcgc
aagtgtccgccatgctggtataagttttctaacacattcctgatctgggagtgctccccc
aactggattaagaccaaggagattatgaacctgattgtcatggaccccttcgtggattta
gccatcaccatctgtatcgtcctcaacaccctcttcatggccatggagcactaccccatg
acccccgactttgaacacatgctgtctgtaggcaatctggtgttcacagggatctttgca
ggagagatgcttttcaagctgatggctatggacccgtattactacttccaggaggcctgg
aactgttttgacggtttcattgtgacgctgagtttagtggagctggctctggccgacgtg
gaaggcttgtctgtgctgcggtcattccgattgctgagagtgtttaagctggccaagtca
tggcccaccctcaacatgctgatcaagatcattggtaactcggtgggagccttgggaaac
ttgactctggtgctggccatcatcgtcttcatctttgccgtggtgggtatgcagctgttt
ggcaagagctacaaagactgtgtgtgtaagatcaatattgaatgcgagttgccccgctgg
cacatgaacgacttcttccactccttcctgatcgtcttccgggtgctgtgcggtgaatgg
attgagaccatgtgggactgcatggaggtcgcgggtcagggcatgtgtctcctcgtcttc
atgatggtcatggtcatcggtaacctggtggtgttgaacctgtttcttgccttgctgctg
agctctttcagcgccgacaacttggctgcaacagatgacgacggtgagcccaacaacctg
cagatttccgtaaagcgtatcaagataggcattgcatggtttaaagcaaagatgcgcata
gtggtggccagtctgctgaagaaaccacagatggaggacgagcataagcctttggacgac
atgtatgacaagaagctgaactgcattgctaaccacagcggggtggacatcaaccgtgac
ctggactacgccaagaatggtaacggcacaaccagcggtataggcagcagcgtggggaag
tacatgatcgatgaggaccacatgtcattcatccacaacccgaacctgaccgtctgcgtg
cccatcgctgtgggagagtctgactttgagaacctgaacacagaggacttcagcagcgag
tcggagaatgagaacagcaaagagatggatgacaccagttcttcggagggcagcaccatc
gacatcaagccagatgtggtggaagaggtggtggtggaaactgtggaggaatacttggat
ccagacgcgtgttggacagatggttgtttggccaagtttaagtgctgtgtggttgacatt
tctacgggctggtggaagaagtggtggtacctgagaaaaacctgctacctgatagtggag
cacaactggtttgagaccgtcatcatcttcatgatcctcctcagtagcggtgccctggct
tttgaagatgtgtacatcgagcagaggaagaccattcggatcattttggagtacgctgac
agggttttcacctacatcttcatcctggagatgttgttgaaatgggtcgcctacggtttt
gtcaagtatttcaccaatgcttggtgttggctagacttcttcattgtggatgtgtctata
gtcagccttgtagctaatgcgctgggctactccgatctagggcccattaaatcactcagg
acactaagggccttgagacccctcagagccttgtcacgttttgaagggatgagggtggta
gtcaacgccttggtgggtgccatcccttccattatgaatgtgttgctggtttgcctgatc
ttttggctgattttcagtatcatgggggtcaacttgtttgcgggcaagtactactactgt
tggaatcatacagctgaggagtacttttctgtcgacgtggtcaacaacaagacccagtgt
gaggccctcattagtcaaaactttaccgaggtcaggtggaggaatgtcaagatcaacttt
gacaatgtgggcgccggatacctcgccctgctgcaagtggccacattcaaaggttggatg
gacattatgtacgcggctgtggattcgagaaatgtggaagaccagcccagctatgaagtc
aacatctacatgtacatctactttgtcgttttcatcatttttggctccttcttcaccctg
aacctcttcattggtgtgatcattgacaacttcaaccagcagaagaaaaagtttggaggc
caggatatattcatgacagaagaacagaagaaatattacaatgccatgaaaaaacttggg
tccaaaaagccacagaaacctattcctcgaccacagaacccggtccaaggcatggtgttt
gactttgtgacacagcaagtctttgacatctccatcatgatcctcatctgcctcaacatg
gtcaccatgatggtggaaactgacgatcagtcagatgaaacagagaatgtcctctactgg
gtcaacttcatctttattttcgtcttcaccacggagttcctgctaaagctgtttgccctt
cgccactattacttcaccaatggctggaatatcttcgacgtggtggttgtcatcctgtct
attgttggtatgttcctggctgatatcattgagaagtattttgtgtcaccgaccctgttc
agggtgatcaggttggcccgtatcggccgtatcctccgtctgatcaaaagtgctaagggt
attcgaactttgctgtttgctctgatgatgtcactgccggccctgttcaacattggccta
ctgcttttcctggtcatgttcatcttctccatcttcggaatgtccaactttggctacgta
agacacggagcgggagttgatgacttgtacaactttgagacttttggcaacagtatgatc
attctgttcatgatcaccacgtcagctggatgggacggactgctgctgccgatcctcaac
tacccaccagactgtgatccacttttggagaaccctggtacatccgtgaagggcgactgt
ggaaacccctcagtgggaatcttcttttttgtaatgtatatcatcatttctttcctgatt
gtggtcaacatgtacattgccatcatcctggagaacttcagcgtagccacagaggaaagt
gctgatccgctcagtgaagacgactttgagaccttctacgagatctgggagaagtttgac
cccactgcctcgcaatttattacttttgccaagctggctgactttgccgacacacttgag
cacccacttcgtgtgccaaagcccaacgctatagaactaattgccatggacctgcccatg
gtgagtggcgatcgcattcactgcctggacatcctgtttgccttcacaaagcgagtgctg
ggtgacagtggtgagttggacatgctgaggcaacagatggaggagcgttttgtggcagcc
aacccctcgaaggtgtcgtatgaacccatcaccaccacgcttcgccgcaaacaggaggat
gtctctgccagaattatccagaatgcctaccgcatccacctcatccggcgaggtatcatc
ttcaagcgccgtactttttctaacaataagtatgagaatggagggaccaaccaagagaag
aaggagagcacaccatctacagcctctttgccttcctacgacagcgtgaccaaacctgac
aaggagaagcaggacgaaaacaaggaggagtgggccagaaaagagaaggacaaaaaccaa
aaagatgagtgggaatctaagtgttag
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