Trematomus bernacchii (emerald rockcod): 117494639
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Entry
117494639 CDS
T09643
Symbol
si:cabz01101003.1
Name
(RefSeq) LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase CYLD
KO
K08601
ubiquitin carboxyl-terminal hydrolase CYLD [EC:
3.4.19.12
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04217
Necroptosis
tben04622
RIG-I-like receptor signaling pathway
tben04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
117494639 (si:cabz01101003.1)
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
117494639 (si:cabz01101003.1)
04625 C-type lectin receptor signaling pathway
117494639 (si:cabz01101003.1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tben01002
]
117494639 (si:cabz01101003.1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tben04121
]
117494639 (si:cabz01101003.1)
Enzymes [BR:
tben01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
117494639 (si:cabz01101003.1)
Peptidases and inhibitors [BR:
tben01002
]
Cysteine peptidases
Family C67
117494639 (si:cabz01101003.1)
Ubiquitin system [BR:
tben04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
117494639 (si:cabz01101003.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAP_GLY
UCH
EAD8
Motif
Other DBs
NCBI-GeneID:
117494639
NCBI-ProteinID:
XP_034001461
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MSGAHEQTRKRRPQKMFLISTDLKVQDQVDGTIKLLRGFICQEQEAGRSRGDSYWVKVLD
NDLMLKIEKKFLLEIPSDLSGLLEAVSDPEARLKLLRDPGKLQTFASLPVDSPLWVQIGQ
QDELAEADLKYIGPRSRGSSAVYFGVQLKGSAAGKGSSNGSFKGQRLFSCPEACALFLPV
SHVYVRTWTRNNVQDAQERAKERDRHRSSHGNGQHGNGQHNNERQHPQHQGRHISFHHPR
PSSPPVGFLPRTAESAPITAQNQNQVRAPASPPPLHVGQRVMFPIEDNVYGGEVRFCGLL
PGRSSSGMYVGILLDAPVGQWDGLYKGDKLCNIPSPLYGALVPINKVSSDSKPHRHTPPH
QVTKSILKGAPPPLIKPLPLSVPHSAPKVALMPPGKQGVKVPPLPPPKPNNKPLLPPLTA
PKPLSPTSPTFTPTHTPTHTPTHTPTHTSPEHSHHNGVHGPPSPSLRSPVSSEAVEEDGE
AELDGGLEVGSMVEVNDPPLFGVIRWIGRISGVGEPVAGIELDQDLSAGTDGSYLGERHF
RCPANKGLFVKLRNCRRDSRFPAPETPVNQVERCNSIAFADWGSERVEDNSPPVEGEEAA
ELYEGWKRGIQGHLNSCYLDATLFSLFSCCSSADWVLFWPSEPDSDSSLAQDLLRCEIVN
PLRRYGYVCASKTMALRRLLEAANSNMGFTNQEKDPEEFLNKLFQLLQVEPLLKIRSMTQ
QPQEGHLYQLFPPTLPPSPTSPLLISPIGSPIPLAPPSPSRMRVASVQTLLESSFLHAGL
KFVEAPSCLLLLMPRFGKDFKMFDAILPTLSLDITDLLDDTLRQCSICQAVAEWECLQCY
EDPDITPGRLKQYCSTCNTQVHSHRKRASHHPVDVAVPGGPWTGPLLSARQRMSLFAVTC
IETSHYVSFVKHGPLPTDWMFFDSMADREGGQNGFNIPHVKACPEVGRFLSLSEQELSRV
DPASIRESARRLLCDSYMCLYHNPDLSLYK
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggggctcatgagcaaaccaggaagcgacgcccccaaaaaatgttcttgatctcg
accgacctgaaggttcaggaccaggtggacggaaccattaagctgctgcgggggttcatc
tgccaggagcaagaggcgggccggagcagaggcgacagctactgggtcaaggtgttagac
aatgacttaatgttgaaaatagagaagaagttcctgctggaaatcccgtccgacctcagc
ggccttttggaggctgtttctgatccagaggcccgactaaagcttctaagagatcctggg
aagctgcagacttttgcgtctctgcccgttgattctccgctctgggtccagatcggccaa
caggatgagctggcagaggcagaccttaaatacatcgggccgcgctcaagagggagcagc
gctgtgtattttggggtacagctgaagggctcagccgccggtaaagggtcgagcaacggc
tccttcaagggccagcggctcttcagctgccctgaagcctgcgccctcttcctgcccgtc
agccacgtgtacgtccgaacctggacccgcaacaacgtgcaggacgctcaggagcgagcc
aaggagcgagaccgccaccgcagcagccacggcaacgggcaacacggcaacgggcaacac
aacaacgagcggcagcatcctcagcatcaaggtcgtcacatcagtttccatcaccctcgc
cccagcagcccccccgtgggtttcctccctcggacagcagagtcagcaccaatcacggct
cagaaccagaaccaggtccgagcccctgcatccccccctccgctccatgtgggccagagg
gtgatgttccccatagaggacaacgtctacgggggggaagttcgcttctgtggtctgctg
cctggtcgctcctcctcagggatgtacgtgggaattctgctggacgctcctgtgggacag
tgggacggtctttataaaggagacaagctctgcaacattccctctccgctctacggagca
ttagtgcccatcaacaaggtttcctcagattcgaaaccccaccgtcacacgccgcctcac
caagtgaccaaatccatcctgaagggcgcccccccccccctcattaagcccctccccctg
tcggtcccccactctgcgcccaaagtcgccctcatgcccccaggcaaacaaggggttaaa
gttcctccactgccgccccccaaacccaacaacaagccgcttcttccccctctgaccgct
cccaaacccctcagcccaacatcacccaccttcacccccacacatacccccacacatacc
cctacacacacccccacacacacctcccctgaacactcccatcacaatggcgttcacggc
cccccctccccctcgctgaggtctccggtcagcagtgaggctgtggaggaggatggagag
gcggagctcgatggggggctggaggtggggtccatggtggaagtgaacgacccgcccctt
tttggggtcattcgctggattggacgcatcagtggggtgggagagccggtggcagggatt
gagctggaccaggatctgtctgcagggacagacggcagttacctgggtgaacgtcacttc
cgttgccccgccaacaaggggctgtttgtgaagcttcgcaactgcaggcgggactccaga
ttccccgcccccgagacacctgtcaatcaagtggagcgatgcaactctatagcgtttgca
gactggggcagtgagcgggtggaggacaactccccccctgtggagggggaggaggccgct
gagctctacgagggctggaagagaggcattcagggacacctcaactcctgctacctggac
gccacgctgttcagtctgttctcctgctgcagttctgcagactgggttctgttctggccc
tcggaacccgacagcgactccagcctggctcaggacctgctgcgctgcgagatcgtcaac
ccgctgagaaggtatggctacgtgtgtgccagtaagacgatggccctgcggcgactgctg
gaggccgccaacagcaacatgggcttcaccaaccaggagaaagatcctgaagagttcctc
aacaagcttttccagctcctccaagtcgagccgctcctcaagatcagatcgatgactcag
cagcctcaggagggtcacctgtaccagctcttcccgcctacacttcctccttctcccacc
tcacctttactcatctcccccatcggctcccccatccctctggccccgccctcgcccagt
cggatgagagtagcgagtgttcagacgctgctggagtcttccttcctccacgctggcctc
aaattcgtcgaggctccctcctgcctcttactgctcatgcctcgctttggaaaggacttc
aaaatgtttgacgccatcctgcccaccctcagcctggacatcacagacctgctggacgac
actctgaggcagtgcagtatctgtcaggctgtggctgagtgggagtgtctgcagtgttac
gaagaccccgacatcacccccgggcgtctcaaacagtactgcagcacctgcaacacacag
gtccacagtcacaggaagcgtgcgtcccaccaccctgtagatgttgctgtccccgggggt
ccgtggaccggccccctgctgagcgcccggcagcggatgtctctgtttgcggtgacgtgc
atcgagaccagccattacgttagcttcgtcaaacacggacccctccccaccgactggatg
ttttttgacagtatggcagacagggaaggtggccagaacggcttcaacatcccccatgtg
aaggcgtgtccggaggtgggccgcttcctcagcctatcagagcaggagctgagcagagtt
gatcccgcctccatacgggagtcggcccgccgcctgctgtgtgactcctacatgtgtctg
taccacaaccccgatctcagcctgtacaagtga
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