Trematomus bernacchii (emerald rockcod): 117494900
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Entry
117494900 CDS
T09643
Symbol
prdm1a
Name
(RefSeq) PR domain zinc finger protein 1a
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117494900 (prdm1a)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
117494900 (prdm1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
C2CH-3rd_BIRD-IDD
Zf-C2H2_ZNF451_C
zf-C2H2_4
zf-C2H2_6
zf-C2H2_jaz
zf-met
zf-C2HE
B129_C2H2-zf
STL11_N
Zf-C2H2_ZNF451
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
117494900
NCBI-ProteinID:
XP_034001794
LinkDB
All DBs
Position
Unknown
AA seq
833 aa
AA seq
DB search
MCGWDQSYTATSHSSAMLTSEGAHTMEQEEAHHGAKMAATATTNTTAASSGSETMADTDV
DMEMETEMDDADMTRWTEAEFEGKCTYMVKDTDGDAMTTTRAEASLPRNLAFKHPADSKE
VVGVCSREYIPKGTRFGPLVGEIYTADSVPKDANRKYFWRIYEDQEFHHFVDGLDESRSN
WMRYVNPAHSAAEQNIAACQNGMEIYFYTVKPVPPGTELLVWYCHDFARRLHYPPSGELM
MQKLKQSLLEVKQQQVSSEERLVDASSPSPAAVTPAQPKREHSVLSILRGTNCTSSSSSS
SSPIKREPSRPLPTRPRCADSPERPLYPRALYPGLRPHPHIPEDFLGHKHGYPATRSPGN
QSSATPSPSARSSPDSSPQGSPSGPATGSFYPTGLSSYPGYSPPPTPLSSSFYPPGASYS
RYLLPHHYPLPGGGVPTVGGIFPRMYPLYMPPHVPLLPADAAGRRFLMPDRVHPSSMSAH
REFLLPRPSSAFSAAAYLKDKRGLHHHYHGHPHGPASSRGSPTAGTSPPSERLPTKPTSA
MLCNSSDDEEAMNLSKMKRGPGSAGYKALPYPLKKQNGKIKYECNVCSKTFGQLSNLKVH
LRVHSGERPFKCQTCNKGFTQLAHLQKHFLVHTGEKPHECQVCHKRFSSTSNLKTHLRLH
SGEKPYHCKLCPAKFTQFVHLKLHKRLHSRERPHKCSHCQRHYIHLCSLRLHLKGYCPTA
SNQGDPEEVQRANEEIERFDVSEHAEQLEQLQGGAEVEAILEKQILGILWRESDLKSSHF
HPHHKGGANDLLSAGYGAYDSPNETSVIKMRHSSPVLPLPANVTVKQESEDHA
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggatgggaccaaagttacacggcgacctctcatagctcggccatgttgaccagt
gagggggcgcacaccatggagcaggaagaagcacaccacggagccaagatggctgccaca
gcgaccaccaacaccaccgccgccagctccggctcagagacgatggccgacacagacgtg
gacatggagatggagacggagatggacgacgcagacatgacccggtggacggaggccgag
tttgaggggaagtgcacgtacatggtcaaggatacggacggcgacgccatgacgacgacg
agagcggaggcctcgctgccccgaaacctcgccttcaaacacccggccgacagcaaggag
gttgtcggtgtgtgcagcagggagtacatccccaaaggaactcgcttcggacccctggtg
ggcgagatatacacggccgacagcgtgcccaaagacgccaaccggaagtacttttggagg
atctacgaggaccaggagttccaccacttcgtggacgggctggacgagagccgctctaac
tggatgcgctacgtgaacccggcccactcagcggcggagcagaacatcgccgcctgtcag
aacgggatggagatctacttctacaccgtgaagcccgtcccccccggcaccgagctgctc
gtctggtactgccacgacttcgcccggcgcctccactacccgccgtccggggagctgatg
atgcagaaactaaagcagtccctcctggaggtgaagcagcagcaggtgagcagtgaggag
cgcttggtcgacgcctccagcccgtcccccgcggcagtaacccccgcccaacccaagagg
gaacacagcgtgctctccatcctccgaggcaccaactgcacatcctcttcctcctcttct
tcctcgccgatcaaaagggagccgagccggcctcttcccacccgcccgcgctgcgccgac
agccccgagcgccccctgtaccctcgagctctctacccgggtctcaggccccaccctcac
atccccgaagatttcctcggacacaaacacggttaccccgctacccggtcgccaggaaat
cagtcctcggcgacgcccagcccgtcggcgaggagcagcccagacagcagtcctcaggga
agcccctcgggtccggcaacagggtctttctaccccactggactcagttcttaccccggt
tactccccaccaccaacccctttatcttcatccttctaccctccaggagcctcgtactca
cgctacctccttccccatcactaccctcttccaggcggaggcgtccctaccgttggaggt
atcttccccaggatgtaccccctctacatgccccctcacgtgcccctcctgcccgccgac
gcagcaggaaggcgcttcttgatgcccgatcgtgtccacccgtcctccatgtcggcccac
agggagttcctcctccccaggcccagcagtgccttctcagctgccgcctatctgaaggac
aaacgggggcttcaccaccattatcacggacacccacatggacccgcctcctccagaggc
tccccgacagcgggcacatcccctcccagcgagcggctgcccaccaagcctacctctgcc
atgctgtgcaactcgagcgatgacgaggaggccatgaacctgtccaaaatgaagcgtggc
cccgggtcggcgggatacaaggcgctgccgtacccactgaagaagcagaacgggaaaatc
aagtacgagtgcaacgtgtgcagcaagaccttcggacaactgtcgaacctcaaggttcat
cttcgtgtccacagtggcgagagacccttcaaatgtcagacctgcaacaaaggcttcacc
cagctggctcacctgcagaaacacttcctcgtccacaccggggagaagccacacgaatgc
caggtttgtcacaagcgcttcagcagcaccagcaacctgaagactcacctgcgtctgcac
tcgggggagaagccgtaccactgcaagctctgcccggcaaagttcacccagttcgtccac
ctcaagctgcacaagcgcctgcactcccgcgagcgcccgcacaaatgctcccactgccaa
cgccactacatccacctgtgcagtctgaggcttcacctgaagggctactgccccacggcg
tccaatcagggcgacccggaggaggtacagcgcgccaacgaggagatcgagcgcttcgac
gtcagcgagcacgccgaacagctggagcagctccagggcggcgcggaggtcgaggccatt
ttggagaagcagattttggggattctgtggagggagagcgacctcaagtcctctcacttc
catccccaccacaagggcggcgccaacgaccttctttctgccggttacggtgcgtacgat
tccccgaatgagacgtcggtgatcaagatgaggcacagcagccccgtcctgccgcttcct
gccaacgtcaccgtcaagcaggagtcggaggatcacgcttaa
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