Trematomus bernacchii (emerald rockcod): 117494957
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Entry
117494957 CDS
T09643
Name
(RefSeq) contactin-1a-like isoform X1
KO
K06759
contactin 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
117494957
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117494957
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
tben00537
]
117494957
Cell adhesion molecules [BR:
tben04515
]
Immunoglobulin superfamily
Contactins
117494957
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
tben00537
]
Others
117494957
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
C2-set_2
Pur_ac_phosph_N
Motif
Other DBs
NCBI-GeneID:
117494957
NCBI-ProteinID:
XP_034001874
LinkDB
All DBs
Position
Unknown
AA seq
1039 aa
AA seq
DB search
MLHLTLLLHLLVLPLCFADASTHGELPDFYRDEATGYGPVFEEQPVETIYPEESPEAKIT
MSCRARANPPATYKWILEGREIDMKAQSSHYRLVGGNLVISNPIKTEHVGEYLCLASNLH
GTIISRKASVQFGYLDLFSSEERESVYVKEGQGAVLLCAPPPHYPAELSFRWILNEFPTF
IPLDKRRFVSQITGNLYISKVDSSDSGNYSCIASSQSISKSVFSNYIPLVPLAERPIRKY
PADLKVKFPDTIALVRHNITLECFALGNPVPEIRWKKLDGQMPPNHEVRMAGAHLHLYNV
QFEDGGSYQCEAVNSRGKDYHAARLSVEAFPEWVQHISSSEKDLGRDYTMSCKASGTPEP
SIRWLINGEPALESESEAEYRDSGERSIAESNRKDMRFSSLAFGNSGMYQCIAENHHGII
YANAELRVYACAPTFKHNPLKDLMAPKNGRVVIECRPKAAPKPTFSWSKGTELLSNSTRV
FILEDGSLEILNVTRADKGRYTCFAENDRGKANSTGDLLVTDSTKITLAPANADVKVGET
IAMQCAASHDTTLDITFIWSLDGRVIDLHKESQHYERTLNGSSNGELLIKNVHLKHTGRY
TCTAQTPIDNMTASAHLVVRGPPGAPGGVRVMNKTDKSVMLQWSRGADNHNPITKYTIQY
RDSFSKDVWKNATTSPADVEGNTEMTTVADLIPWIEYEFRVIATSTLGTGEPSSPSHKEK
TLEAIPVVAPSDVGGGGGTNRELTITWTPVQPQYYYGPNFGYIVAFKPHDGAEWMRVTLA
DPQAKHYVHKDAAIPASTEFQVKVKAFNSRGEGPFSLTASIYSAQDAPSEAPVIVDGKSL
SATEGTVRWLHLAQSNIDGYQVKYWRSEEDSEGGAQRVVVSANENSTRLEGMKPFSYYLV
EVRAYNSAGFGPASEPFQILTKRPPPSRAPKIIGKKIKGDKLNIAWEMVEPIGNEASING
YKVLYRRQGHTENTLFVTNKEYINLPLPEGGNWVVEVRAFTEGGDGAVSQIYVTGGGVLA
APALSLLSLLLLALLCLNL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacctcaccctgctcctccatctcctggtcctccctctctgctttgcagatgca
tcaacgcatggggagttacctgacttttatagagatgaagccacaggttacgggccagtg
tttgaggagcagccggtggaaaccatctacccggaggagtcgcccgaggcaaaaatcacc
atgagctgccgggcccgggccaacccacctgccacatacaagtggatactggaaggcagg
gaaattgacatgaaagcacaaagcagtcactacagattagtaggaggcaacctagtcatc
agcaatcccataaaaaccgaacatgtaggagagtacttgtgtttggctagcaacctgcac
ggcacgatcatcagccgaaaagcctcggtccagttcggatacctggatctgttctcgtcg
gaggagagggagtcggtgtacgtcaaagaggggcagggggccgtgctgctctgcgctccc
ccaccacattatccagccgagctgtcgttccgatggatcctcaatgaattccccaccttc
atcccgctggacaagaggcgttttgtctcccagataacgggtaacctctatatctccaag
gtggactcctccgacagcggcaactactcctgcatcgcctccagccagtccatttccaaa
agcgttttctccaactacatccccctcgtacctctggctgaacgtcccatcaggaaatac
ccggctgacctcaaagtcaagttcccagacaccattgctttggtgaggcacaacatcaca
ttggagtgcttcgctttggggaaccccgtccctgagatccgctggaagaagctagacgga
cagatgccacccaatcacgaggtgcggatggcgggggctcatctgcacctgtacaacgtg
cagtttgaagacggaggcagctatcagtgtgaggcagtgaactccagaggaaaggactac
cacgctgcacgtctgtctgtagaagcgtttcctgagtgggtgcagcacatcagcagctca
gagaaagacctcggtagggattacaccatgtcctgcaaagcaagcggcacacctgaacca
agcattcgttggctgataaatggagaaccggcacttgagagtgagtcagaggcagaatac
agggacagtggagagaggtccattgctgagtccaacaggaaagacatgaggttcagcagc
ttggcgtttggtaattcagggatgtaccagtgcattgcagaaaatcaccacgggatcata
tatgccaacgcagagctgcgagtgtatgcgtgtgctcccacatttaaacacaacccattg
aaggacttgatggcacctaaaaatggccgtgtggtgattgaatgtcgaccaaaagcggct
ccaaagcccaccttctcctggagcaaaggcaccgagctgctctccaactctaccagggtg
ttcatcttggaggatgggagcctggagatcctcaacgtgacgcgggcagataaaggacgc
tacacctgcttcgccgagaacgaccggggcaaggccaacagcacgggggatctgttggtc
acagattccactaagatcacgttggcaccggccaatgctgacgtcaaagtgggtgagacc
atcgcgatgcagtgtgcagcgtcacatgacaccactcttgacatcaccttcatctggtcc
ctggatggccgggtgattgacctacacaaggaaagccaacattatgaacgcaccctgaat
ggaagttcaaacggtgagctgctgattaagaacgtccatctgaagcacactggacgctac
acctgcactgcccagacccccatcgacaacatgaccgcctcggcccacctggttgtcagg
ggtccccccggagccccaggtggggtgcgagtgatgaacaaaactgacaagagtgtaatg
ttgcagtggagccgcggagcagacaaccacaaccccatcaccaaatataccatccagtac
agggactccttctcaaaggatgtctggaagaatgccacgacatctcctgcagatgtagaa
gggaatacagagatgaccacagtggcggatctgatcccctggattgagtacgagttcaga
gtgatcgccaccagcaccttggggacaggagagccaagcagcccgtcacataaagagaaa
accctggaagcaattcctgtggtggcgccctctgatgtgggcggtggcggagggaccaac
agagagctgaccatcacgtggacgcctgtacagccgcagtactactatgggcctaacttt
ggctacattgtggccttcaaaccacacgatggagcggagtggatgcgggtgacgctggcc
gacccccaggccaagcactacgtccacaaagacgccgccatccctgcatccacggagttt
caagtcaaggtcaaagcgttcaacagcagaggagagggacccttcagcctaacagccagc
atttactctgcacaggacgctccatctgaagctcctgtcattgtggatggcaaatctctc
tctgccacagaaggcaccgtgcgctggctgcatctcgcacagagcaatatagacggatac
caggtgaagtactggaggagtgaagaggacagtgaggggggggcccagagggtggtggtc
agcgccaatgagaacagcaccaggctggagggcatgaagcccttctcctactacctggtg
gaggtccgggcgtacaactctgcaggatttgggccggccagcgagcccttccagatcctc
accaagagaccccctccaagtcgagctcccaaaataattgggaaaaagattaaaggcgac
aaattgaatatcgcctgggaaatggtggaaccgattggtaacgaggcgtcgataaatggt
tataaagtgctgtacaggcggcaggggcacaccgagaatacgctgttcgtaaccaacaag
gagtacatcaacctccccctgcccgaaggggggaactgggtggtggaggtccgggcgttc
acagaggggggggatggggccgtgtcacaaatctacgtcacaggtgggggggtcctggcc
gccccggctctcagcctcctctccctgctcctgctggccctcctctgcctgaacctctga
DBGET
integrated database retrieval system
