Trematomus bernacchii (emerald rockcod): 117495294
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Entry
117495294 CDS
T09643
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117495294 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117495294 (sf3b1)
03036 Chromosome and associated proteins [BR:
tben03036
]
117495294 (sf3b1)
Spliceosome [BR:
tben03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117495294 (sf3b1)
Complex B
117495294 (sf3b1)
Complex C
U2 SnRNP specific factors
117495294 (sf3b1)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
117495294 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
GST_N_4
DUF2298
Menin
Motif
Other DBs
NCBI-GeneID:
117495294
NCBI-ProteinID:
XP_034002369
LinkDB
All DBs
Position
Unknown
AA seq
1321 aa
AA seq
DB search
MAKIAKTHEDIEAQILEIQGMKANLLEEGDQGVGLDSTGFFDPEIYGGSDSRFAGYVTSI
AANEEEDDDEEDSSTSLLGQKKPGYHAPVAILNAIPQSDEQYDPFAEHRPAKIADREDEY
KGRRRMMIISPERLDPFADGGKTPDPKLQVRSYVDVMLEQNLSKEEREIRQQMVEKAKAG
ELKVVNGSAASQAAAAAKRKRRWDQTADQTPTNTTPKKVSSWDQADNSAETPGHTPGHTP
AHTPSNSRWDETPGRPKGSETPGATPSNRMWDPTPSHTPAGAATPGRGDTPGHATPGHGG
ATGSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESVEETPTPGASKRKSRWDETPA
SQMGSSTPTFTPGKTPIGTPAMNMATPSPGHLMSMTPEQLQAWRWEREIDERNRPLTDDE
LDAMFPEGYKVLPPPAGYVPIRTPARKLSATPTPMGGMTGFHMQVEDRTTKQMNDQPSGN
LPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKA
REFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLI
DEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPS
LLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRT
ISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYAN
YYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRM
ALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAAD
IDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNK
SAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNV
IGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELL
ELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETC
SPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLV
HRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGP
CRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPQVYNDEKNAYVRYELDYA
L
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaaaacccacgaagacatcgaggcccagatcctcgagatccagggg
atgaaggccaatctcctggaggaaggcgaccaaggagtgggcctcgactccactggcttt
tttgacccggagatttatggaggcagcgacagtcgctttgctggatatgtcacttccatt
gctgccaatgaagaggaggatgacgatgaagaggattcatcaacaagcttgttgggacaa
aagaagccagggtaccacgcgccggtggcgatactcaatgccattcctcagtcagacgag
caatatgacccatttgcagagcatcgtccggcgaagatcgcagaccgggaagatgaatac
aaaggccggcgcagaatgatgatcatctcccccgagcgtctcgatccttttgcagatggg
ggcaaaacgccggaccccaagctgcaagtcaggtcgtatgtggacgtcatgttggagcag
aacctctccaaagaagagagagagattcgtcagcagatggtagagaaggccaaagctggg
gagctgaaagttgtcaacgggtccgctgcctcacaagctgccgccgccgctaaacgtaaa
cgtcgttgggaccagacagctgaccaaacccccacaaatactacacccaaaaaagtgtcc
agttgggaccaggcagacaactctgctgagactccaggacacacaccaggacacacccct
gcacacacaccttcaaacagccgatgggatgaaacccccggccgccccaaaggcagcgag
acccccggggcgactcccagtaaccgcatgtgggaccccactcccagccacacccccgca
ggtgctgccaccccaggcaggggcgacacaccgggccacgccacacccggacatggagga
gccacgggaagcgtacgaaagaaccgctgggacgaaaccccaaagacagagagggagacc
ccgggacacgggagcggctgggctgagaccccgcgcacagacagaggagacgagtcggtg
gaagagactccgacaccaggggccagtaagaggaagtctcgctgggacgaaacccccgcc
agtcagatgggatcctcaacaccaacattcaccccgggaaaaacccccatcggaacgcca
gctatgaacatggctaccccatcaccaggtcacctgatgagcatgactccagagcagctg
caggcgtggaggtgggagcgtgagatcgacgagaggaaccgtcctctgacagacgatgag
ctcgatgccatgttcccagagggatacaaggtcttgcctccaccagctggctacgtgccg
atccgtactccagctcgtaaactatccgccacaccgacccccatgggaggcatgacaggc
ttccacatgcaggtggaggaccgaaccaccaaacagatgaacgaccagccctcaggaaac
ctgcccttcctcaaacctgacgacatccagtactttgacaaactgctggtggaggtcgat
gagtccactctgagccccgaggagcagaaagagaggaagatcatgaagctgctgctgaag
attaaaaatggaacaccgcccatgagaaaggctgctctgcgtcagatcacagataaagct
cgtgagttcggagcgggtcctctgttcaatcagatcctgccgctcctcatgtccccaact
ctggaggaccaggagcgccatctgctggtcaaagtcatcgaccgcatcctctacaaactg
gacgacctggttcgaccatatgtacacaagatcctggtggtgattgagcctctgctgatt
gatgaggactactatgccagagtagaaggcagagaaatcatctccaacttggcaaaggct
gccggtttggctacgatgatttccacgatgagacccgatatcgacaacatggacgagtac
gtgagaaacacgacagcccgagccttcgccgtggtggcgtctgctctcggtatcccctcc
ctcctgcctttcctcaaagctgtgtgtaaaagcaagaagtcgtggcaggcgagacacacg
ggcatcaagatcgtgcagcagatcgccatcctcatgggctgcgccatcttgccccacctc
cgcagtttggtggagattatcgaacacggtcttgtggacgagcagcagaaggtcaggacc
atcagcgctctggctatcgctgccctcgctgaagccgccacaccgtacggtatcgagtcc
tttgactcggtcctcaagcccctctggaagggtatcagacagcacagaggaaagggtctg
gctgcgttcctcaaagctatcggttacctgatcccactgatggatgccgagtacgccaac
tactacaccagagaggtgatgctgatcctcatcagagagttccagtcccctgacgaggag
atgaagaagattgtactcaaggtggtgaagcagtgttgtggcactgatggtgtggaagca
aactacattaagactgagatcctgccgcccttcttcaaacacttctggcagcacaggatg
gctctggacagacgcaactacagacagttggtggacaccacagtggagctggccaacaaa
gtgggagcagcggagatcatttctcgcatcgttgatgacctgaaagacgaggcagagcag
tacaggaagatggtgatggagaccatcgagaagatcatgggcaacctgggcgccgccgac
atcgaccacaagctggaggagcagctgatcgacggcatcctgtacgccttccaggaacag
accaccgaggactctgtgatgctgaacggtttcggcacggtggtgaacgcgctcgggaag
cgagtgaagccgtacctgcctcagatctgcggtacggtgctgtggcgtctcaacaacaag
tcggctaaagtccgtcagcaggctgcagatctgatctcacgcacagctgtcgtcatgaag
acctgccaggaggagaagctgatgggtcatttgggtgttgtgctgtacgagtatctggga
gaagaataccccgaagtgctgggtagcatcctgggagctctgaaggccattgttaacgtt
atcggaatgcacaagatgactccaccaatcaaagacctgcttcctcgtctgactcccatc
ctgaagaacagacacgagaaggtgcaggagaactgcatcgacctggtgggcagaatcgct
gacaggggtgctgagtacgtgtcggccagagagtggatgaggatttgtttcgagctgctg
gagctgctgaaggctcacaagaaagcgatccgcagagcgactgtgaacacgttcggttac
atcgccaaagctatcggccctcacgatgtgttggccactctgctgaacaacctgaaggtt
caggagcgtcagaacagagtttgtacgacggtagccatcgccatcgtggctgagacctgc
tctccgttcaccgtgctgccggcgctcatgaacgagtaccgcgtgccggagctgaacgtg
cagaacggcgtcctgaagtccctctccttcctgttcgagtacatcggagagatgggcaaa
gattacatctacgccgtcaccccgctgctggaagacgctctcatggacagagatctggtc
caccgacagacggccagtgcagtggtgcagcacatgtctctgggggtctatgggttcggg
tgtgaggattctctgaaccaccttctgaactacgtgtggcccaacgtgttcgagacgtct
cctcacgtcatccaggcggtgatgggggccctcgagggtctccgggtcgccatcgggccc
tgccgcatgctgcagtactgcttacagggtttgttccacccggccaggaaggtgcgagac
gtctactggaagatctacaactccatttacatcggctcgcaggacgccctgatcgctcac
tacccccaggtctacaacgacgagaagaatgcgtacgtccgctacgagctggactacgcc
ttgtaa
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