Trematomus bernacchii (emerald rockcod): 117495480
Help
Entry
117495480 CDS
T09643
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117495480 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
117495480 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117495480 (lsm5)
03041 Spliceosome [BR:
tben03041
]
117495480 (lsm5)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117495480 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
117495480 (lsm5)
Spliceosome [BR:
tben03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117495480 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
117495480
NCBI-ProteinID:
XP_034002650
LinkDB
All DBs
Position
Unknown
AA seq
93 aa
AA seq
DB search
MNMAATPATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFE
ITPEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggcggctactccagcaacaaatccgtcccagttgctcccacttgagcttgtg
gacaaatgtattggctcccgaattcacatcgtcatgaaaaccgacaaagaaatcgtcggc
accctgcttggtttcgatgactttgtcaacatggtcctggaagacgtgacagaatttgaa
atcacaccggagggaagaaggataaccaaactggaccagatcctcctcaatggcaacaac
atcacaatgctcatacctggaggagaaggtcctgaagtatga
DBGET
integrated database retrieval system
