Trematomus bernacchii (emerald rockcod): 117495636
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Entry
117495636 CDS
T09643
Symbol
hnrnpm
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein M isoform X1
KO
K12887
heterogeneous nuclear ribonucleoprotein M
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117495636 (hnrnpm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117495636 (hnrnpm)
Spliceosome [BR:
tben03041
]
Common components
Common spliceosomal components
hnRNP proteins
117495636 (hnrnpm)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_MARF1
RBD_DEAH11
HnRNP_M_NLS
Motif
Other DBs
NCBI-GeneID:
117495636
NCBI-ProteinID:
XP_034002925
LinkDB
All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MSTEQAESITVSEKAVQQPPPAQQQPPPSEVNGKIKLETNSGRKERPQKRGGGGRFEPYG
NVNKRYRVFVSNIPYDVKWQALKDLMKEKVGEVTYVEHLMDAEGKSRGCAVVEFRTEELM
KKAVEKVNKHNLNGRPLKVKEDPDGVIAQREINKTQGGGHPGGHGGMGGMGNMGGMGVMG
GMDRINMERMGPGPGNGNVNIPPSLMNNPNIPNEVIHGLQAGRIGSTVFVANLDYKVGWK
KLKEVFSMAGIVVRADILEDKDGKSRGMGTVTFDMPIEAVQAVSMFNGQLLFNRLMHVKL
DEKSLPKDFGPPERASSALPRGLSGIGLGLGPNGQPIDATQLNRGGGGGGGGGGGGGGGM
GNMGPGGMDGMGFGNMGGRMGGGSGGGDFPSVPGMDNFGGMNNMERFGSSGMGRANEMER
GIGGAFEREFGRNDMGMSRNNFGESFERGMGNSQGMDRMGAGMDRMGGGMERMGGGMERM
GGMDRMERGSDLERIGSGFDRMGSGMDRLGPSMDRLGPGLDRMSSSMDRLGPAGFDRLGP
SGLDRMGSGLDFSSPMGMDRMSNTGIDRMPTSFDRIGSTGGIDRFPSGGMDRMNSGGMDR
MGSGSAGGQFDRSADLERGFGGNSFGGAGGPGAGGGGNNNNNNIRKGCQIFVRNLPFDFN
WKMLKDTFNTCGMVQYADIKMENGKSKGCGVVRFDTPETAERVCRTMNGYRLNGREIDVR
IDRNA
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgagcaggccgagagcattacggtgtccgagaaagcagtccagcagccgccg
ccggcgcagcagcagccgccgccgagcgaagtgaatggaaaaatcaagcttgagaccaat
tcaggcaggaaggagagaccccagaagagaggtggaggtggtcgcttcgaaccctatgga
aacgtgaacaagcgatacagggttttcgtcagcaacatcccatacgacgtcaaatggcag
gccctcaaagacttgatgaaagagaaagtgggtgaggtaacgtacgtggaacacttaatg
gacgcagaaggcaaatcgaggggttgcgctgttgttgaattcaggaccgaagagctgatg
aagaaagccgtggagaaagtcaacaagcacaatctcaatggacgtccccttaaagtgaaa
gaggaccctgatggtgtgattgctcagagagaaatcaacaagactcaaggtggaggacat
ccaggaggccatggtggaatggggggaatgggcaatatgggaggcatgggagtaatgggg
ggaatggatcgcattaacatggaacgaatgggcccaggaccaggaaatggcaacgttaac
attcctcctagcctgatgaacaaccccaacatccccaacgaggtcatccacggtctccag
gccggcaggattggcagcactgtctttgtggctaatctggactacaaagtgggctggaag
aagctgaaggaggttttcagcatggcaggcatcgtggtgagggccgacatcctggaagac
aaggatgggaaaagcagaggcatgggcacagtcacattcgatatgcccattgaagcagtc
caagctgtctctatgttcaatggacagcttttattcaacagactgatgcacgtcaaactg
gatgagaaatccctgcccaaagattttggaccacctgagagagcttcttctgctcttccc
cgtggcctgagcggtattggtctgggtctgggacctaatggccagcccattgatgcgacc
caactaaacagaggaggaggaggcggaggaggaggaggcggcggcggcggaggaggaatg
ggcaacatgggccctggaggaatggatggaatgggcttcggcaacatgggcggtcgtatg
ggaggcggcagtggtgggggagacttcccatctgttccaggaatggacaactttggagga
atgaacaacatggagcgtttcggttcttccgggatgggccgggctaacgagatggagcgt
gggattggtggtgcttttgagagggagtttgggcggaatgatatgggaatgtctcgcaat
aattttggagagtcgtttgaaagaggaatgggaaactcccagggtatggaccgcatgggt
gctggtatggaccgcatgggaggcggcatggagcgcatgggaggcggcatggagcgcatg
ggaggaatggacaggatggagcgcgggtctgacctggagaggatcggctctgggttcgac
cgcatgggctcagggatggatcgtctgggacccagtatggaccggctcggaccaggtttg
gaccgcatgagctccagcatggaccgcctgggcccggctgggtttgaccgacttggcccc
tccggattggatcgcatgggttctggcctggacttcagctccccgatgggaatggatcgc
atgagcaacaccggcatcgacagaatgcccaccagcttcgaccgcatcggctccactgga
ggaatcgaccgcttcccctccggcgggatggaccgcatgaactcaggcggcatggaccgc
atggggtccggcagcgccggcgggcagtttgaccgctctgcagacctggagcgtgggttc
ggagggaattccttcggaggagctggaggtcctggagctggtggaggcggcaacaacaac
aacaacaacatcaggaagggatgccagatctttgtcagaaatctgcccttcgacttcaac
tggaagatgctgaaggataccttcaacacatgtggcatggttcagtatgctgatatcaag
atggagaacggcaagtctaagggctgtggcgtggttcgcttcgacaccccagaaactgca
gagcgcgtctgcaggaccatgaacggctaccggctgaacggcagagaaatcgatgttaga
attgatagaaatgcataa
DBGET
integrated database retrieval system
