KEGG   Trematomus bernacchii (emerald rockcod): 117495751
Entry
117495751         CDS       T09643                                 
Symbol
kdm4b
Name
(RefSeq) LOW QUALITY PROTEIN: lysine-specific demethylase 4B
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
tben  Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:tben00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tben03036]
    117495751 (kdm4b)
Enzymes [BR:tben01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     117495751 (kdm4b)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     117495751 (kdm4b)
Chromosome and associated proteins [BR:tben03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    117495751 (kdm4b)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD DUF4537 PHD_4 53-BP1_Tudor DUF7141 zf-RING-like OM45 SLX1_C
Other DBs
NCBI-GeneID: 117495751
NCBI-ProteinID: XP_034003136
LinkDB
Position
Unknown
AA seq 1179 aa
MATEMSMDTVLAPDPAPSASPPALGTSEAQDQISSQEPAIPEIPDTALTSEPDAAPDHIP
APPTNPDKAPGPVPGSELPPAPLLPDSAKNPSCKIMTFRPXVEEFKDFAKYIVYMESQGA
HRAGLAKVIPPEGWKPRRCYDTIEDMVIPAPIMQVVTGQSGLFTQYNIQKKSMTVGEYRK
LANSKKYCTPRHKDFDDLERKYWKNLTFVSPIYGADVSGSIYDEDIQEWNIGRLNTLLDM
VEQECGIVIEGVNTPYMYFGMWKTTFAWHTEDMDLYSINYLHFGQSKSWYAVPPEHGKRL
ERLAQGFFPGSSQGCDAFLRHKMTLISPSILKKYGIPFDRMTQNEGEFMVTFPYGYHAGF
NHGFNCAESTNFATLRWVDYGKMATQCTCRKDMVKISMDVFVRCLQPDRYELWKQGKDIT
VLDHLKATGLSCPELERWREQRVSHRANILRRAMQKMKQLRRLKLEDVKVLAEEGIELNA
AEYQRQVEEREAQRRLDREERLAKEAMMTLEAMEREEQEAAEAAARAAENTDIEEQEPEA
KPQILADDTEKKKQKKQKKLTNMNDPTTGFQEAFAQFASSSIKKSENNMVSHPELEVSAP
QACYSKVKMPTEVKKSRRHPLSKPPMRSPLSIIKQEPTSDKEPSSPTQLDSDMKKQEHLW
QNHSPNFLAEKAFNAAVAALQPHCAVCSLFCPYPEPHKDSFAGSETHRASLPRRTRPLVP
EMCFSVGASNTEPPPTNYHIGEDGTSPLLCCSSCNVQVHASCYGVKTDSVRESWTCPRCA
AGAWTVECCLCNLRGGALKSTIDNRWVHVICAIAVPEARFVNANEREPVDVSAVPDTRKN
LKCVFCHGKTANQNRGACIQCSQENCATSFHVTCAQIAGVVMTPADWPYVVSVTCNRHKR
FPPKPRTSLKSQQGLNLGQKVIGRNSDGWYYHCTLIGMATQTFYEVNFDDGSYCDNLHPE
NILCHDCLHSGPPEVGELIVVGTSDDQIINASFVKEHSHKSYQVEFQDQSQLILKHSEIH
LLEHELPKRVRARLAIPVPQVGVSSTDEAQAAKRRCLPSGSASSTPMETTNKPSCSLTTA
AVASRGAEHLSIHTSQTSQPLPRSTMTLHKAPSHTNGIQMDVETPMDTSVALTDALTEST
LASDAMLTPQPNPFSVDVSFMESLLNSHFHQDSSPGPLY
NT seq 3540 nt   +upstreamnt  +downstreamnt
atggctaccgagatgtccatggacacggtgctggctcctgaccctgccccctcggcctcc
cctcctgcccttggcaccagtgaagcccaggaccagatttccagccaggagccagcaata
ccagaaatcccagacacagcgctgacctcggaacccgatgctgccccagatcacatcccg
gctccgcctacgaacccagacaaggcccccggccctgtgccaggctctgagctgccccca
gcccccctgctgccggacagcgctaagaacccaagctgtaagatcatgaccttcaggcca
nccgtggaggagttcaaagactttgccaaatacatcgtctacatggagagtcaaggggct
caccgggctggactggcaaaggtgattcccccagagggctggaagccgcggaggtgctac
gacaccatcgaggacatggtgattccagctcccatcatgcaggtggtgaccggacagtcg
ggtctgttcacccagtacaacatccagaagaagtctatgaccgtgggcgagtaccgcaag
ctggccaacagcaaaaagtactgcacaccccggcacaaagattttgatgacctggagagg
aagtactggaaaaacctgacatttgtgtcgccaatttatggtgccgatgtcagtggctcc
atctatgatgaggacattcaagagtggaacatcggccgtctgaacacgctgctggatatg
gtggagcaggagtgtggcatcgtcattgagggggtcaacactccctacatgtactttggg
atgtggaagaccacatttgcctggcacactgaggacatggacctctacagcatcaactac
ctccactttggacagtcaaagtcatggtatgccgtcccccctgagcacggcaagcgactg
gagaggttagcacaaggcttcttccctggaagctcccaaggctgcgacgccttccttcgc
cacaagatgactctgatttctccctccatcctaaagaaatacggcattcccttcgacagg
atgactcagaatgaaggggagtttatggtcacctttccttatggctaccatgctggcttt
aaccacggcttcaactgcgcagagtctacaaactttgccaccctccgctgggtggattac
ggcaaaatggctacccagtgtacctgtcgtaaagacatggtgaagatctccatggacgtg
tttgtacgctgcctgcagccggatcgctacgagctgtggaagcagggcaaagacatcacg
gtgttggaccatctaaaggccactgggctcagctgccctgaactagagcgctggagggag
cagcgtgtcagccacagagcaaatatcctgcgaagggccatgcagaagatgaagcaactt
cgtcgtctgaagctggaggatgtcaaggtgctggcagaggaaggcattgagctgaatgca
gcggagtaccagcgtcaggtggaggagcgcgaggcccagaggaggctggaccgagaggag
cggctagccaaagaggccatgatgacgctggaggcaatggagcgtgaggagcaggaggct
gctgaggccgctgctagagcagcagagaatacagatatagaagaacaagaacccgaggcc
aaaccacagatcctggcagatgacactgagaaaaagaagcagaaaaagcagaagaagttg
acaaatatgaacgaccccaccactgggtttcaggaagcctttgcacagtttgcctcctcc
agcatcaagaagtcagaaaacaacatggtcagtcatccagagctagaagtgagcgctccc
caggcatgctactccaaggtgaagatgccaacggaggtaaaaaagagcagacgtcacccc
ctcagcaagccccccatgcgctcccctctgtccatcatcaaacaagaaccgaccagcgac
aaagagccgtcctccccaacgcagctggacagcgacatgaagaaacaggagcacctgtgg
cagaatcactcacccaacttcctggcagagaaggctttcaatgcagcagtggcagcgctg
cagccacactgcgctgtctgctccctcttctgtccataccccgagccacacaaagacagt
tttgcaggcagtgaaacccaccgcgcctcccttccccgtcgaacgcgtcctctggtccca
gagatgtgcttcagcgtcggagccagcaacacggagcctccacccaccaactaccacatc
ggagaggatggaaccagtcctctgctctgctgttcgtcttgcaacgtgcaggttcatgca
agttgttacggtgtgaagacggactcagtcagggagtcctggacgtgccccaggtgtgca
gcgggagcctggaccgtggagtgttgtctctgtaacctgcgcggaggagctctgaagtcc
accattgacaaccggtgggtccatgtcatctgtgccatcgctgtgcctgaagcccgcttc
gtcaacgccaatgagagggagccggtggacgtcagtgcagttccagatacacgcaaaaat
ctgaagtgtgtattctgccatggaaagacggccaatcagaaccgcggcgcctgcatccag
tgctcacaagagaactgcgccacctccttccatgtcacatgcgcacagatcgccggagtc
gtcatgacaccagccgactggccctacgtggtgtccgtcacctgcaacaggcataaaaga
ttccctccaaagcctcggacatccctcaaaagccagcagggtctgaacctaggacagaaa
gtgattggccgtaacagtgacggctggtactaccattgtacactcatcggcatggcaaca
cagacgttctacgaggtcaactttgatgacggctcatactgtgacaacctgcacccagaa
aacatattgtgtcacgactgcctgcattcgggtcctcctgaggtgggggagttgatagtg
gtgggcacatctgacgatcagattatcaacgcttcctttgtcaaagagcactctcacaag
tcctaccaggttgagtttcaggaccagagtcagctgatacttaaacactcagagatccat
ctgctggagcatgaactcccgaagagggtccgagccagactggccatccctgtacctcag
gtgggggtttcatccacagatgaagcccaggcagccaaacgccgctgcctcccgtcaggc
tccgcctcgtccacacccatggagaccaccaataaaccctcctgttccctaactacagct
gctgtagcatcgcgaggagcagaacatctcagtattcacacatcacaaacctcacaacct
ttaccccggtccaccatgaccctacacaaagccccctcccacaccaatggtattcagatg
gacgttgagacccccatggacaccagcgtggccctcacagacgctctcacggagtcgacc
ctggcctcagatgccatgctgactccgcagccaaaccccttttcagtggacgtttccttc
atggagagcctcctcaattcacatttccatcaggacagtagtccaggacccctgtattaa

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