Trematomus bernacchii (emerald rockcod): 117496440
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Entry
117496440 CDS
T09643
Symbol
si:dkey-22o22.2
Name
(RefSeq) LOW QUALITY PROTEIN: neural-cadherin
KO
K27892
neural-cadherin
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117496440 (si:dkey-22o22.2)
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Cadherin related
117496440 (si:dkey-22o22.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Ig_Shg
CADH_Y-type_LIR
Fibulin_C
Cadherin_4
Cadherin_CELSR2_9th
Cadherin_pro
EGF
hEGF
He_PIG
Motif
Other DBs
NCBI-GeneID:
117496440
NCBI-ProteinID:
XP_034003999
LinkDB
All DBs
Position
Unknown
AA seq
2781 aa
AA seq
DB search
MYELTVQLPRGAAAVQVEVSDRNDNIPRFIGGNRTVEVHALTPLGTELARFDAKDGDAER
NGRVTFYASPESHLLHLAPQTGQVRLVRSLLGVRQATLRLCVRDGGSVALIGDPVFLHVN
VQHSGKPRKPRAVRADVALSVSVPQQAALGDLLFTVPDQRFQQRWFQLLSEADSPVQIER
DSGRMYLTRDLLEPAEVLVKIHNSRGEEWYLCRLTLSLPSQAALQWAMFPSPYLGAVGPD
APPGSAVYQLSARHREETPGQTQFLLLDGGEECFEVDRRSGQIRTTGRPLTPSKEYVLRV
QALDGSGQKGSPATVAILAGYRPPQFTNASYSLNVPENTPAGQPVSVVQALSFQRKSVSY
MLQVNPGNLFSVHQESGALSLTRSVDYESGHSVHQLRVRASEPDTGLSGAAEVVVHITDE
NDCTPEFLHSIYTRDNVPESTPPGTSLLQVLARDCDSGLNSDLSYFVHGEDFDITSGGVV
SPARRLDYERPNHVYEFVVVAVDAGSPPRTGTASVRIRVANSNDEAPVFSQSAYKTFLSE
DAGPDTLVAIVHANDPDGDAVSYAITGGNEDSNFLLDKQKGIIKLRRSPPPRLRGPQYVL
NITATDDNASGGPFPLSSSAQVIVGINDINNNKPLFQECPNYSLNAVVLENQPPGTLVLR
VQAHDADMGVNGEVKYGIMNRDGVSSGFDIDPDTGVIVTTASFDREFQREHMLSVTATDQ
AEEPLIGICQITVLIGDENDNDPKFENSRYQYFLREDTPVGTSFLRAAAHDDDQGSNAAI
TYSLTNQKPAYLHINPSTGWIYVNHPISQTSRINQQVVASDGGQRSSSVDLSVIITNVHN
QPPLWEQPEYWVTVPENRARDARVETIKATSPLGDPRVTYNLEEGQVPETNMPVRFYIKP
NRADSSASILVAENLDYETTRLFTLRVRVQNVAAVPLASFTTVYVNVTDVNDNVPFFLSS
TYEATVPEGAEVGTSVAQVSASDLDSGLHGEVHYVILKDESGDSQFFSIDPLSGVIVTQA
SFDREQKSSYLIEVQSQDGSESARPGLQGQPNTDTAYVRIFVTDVNDNAPAFPRPQYELS
VEEDQEVGFTLLTVTANDEDEGANAKLRYQITAGNAMGSFDVEPEVGTIFVAQPLDFELE
QRYELRLVASDGKWENETLVVVQVLNLNDEAPVFSRSEYQASVTEELTQLPVFLLEVSAT
DPDQEADQTALRYSLHGQGADGEFTIDERTGRIYAQRRLDREERAAWRFLVFATDEAGAG
LTGFADVLLEVRDVNDNAPFFPCPALEVDGCFVGQVPENSPADTSVMEMRAMDLDDANEG
KNAMMTYSIIKNVRNEINLNLFSINASSGTIYTVLRSLDREVEERYLVVVEARDGGGLAG
TGTATIMISDVNDHPPVFTQRVYTTQVTEDLEVNSEVLVVSATDGDEGENAVVTFSIVGG
DEDRKFFVETDKVNRRGVIKLQKMVDFEKPRERTFNLTLKAEDADFFSLAYCLVQVEDSN
DHAPVFFPQFYESPAMSEDVPVGTIVAQVTASDLDSGQNGRFSYSISKDSDPYNQFLVDQ
SGWVVVADSLDREKISQHRIMVLATDTGSPPLTGTAIVVVTVLDINDNGPEFEVSYKPVV
WENMAAPQAVRMNDSSLLIHATDRDTSTNGGPFSIRLLMLTSDATNFNLTDFRNGSAAIT
ALRTFDRERQKEYRLPILMIDSGSPPMSSTSTLTVVIGDRNDHPHSSGHTNFVVYSYEGI
LPTTVLGRVQSPDLDDWSEKVYRFEGKPSRLFSLNQSSGALSLREGAPPGSYLLQVLVSD
RTWPDVTSSAQVEVRELQQEALSNAASIRFSNLTLQEFFSRGGVEESRFSRLGRVLADLL
EVSPENVQIFSVRENGLRGGEKSLSVWFVARGSPYYKKEKLHGDVAAHRAKLEALLDVSI
SQVGVDECPATDCAPSGGCSSQVSFSQVPVALSSGNSSLVSLSASSSAQCGCRGREEVHF
PCATYPTNPCLNGGSCQDGPLGFRCKCPPMFDGPECQQTKHSFGGQGYAWFPPIMPCFQS
HISVEFLAESANGLLLYDGPLGPPHSGEQEDFIALELRNGVPALSVNHGSGTLTLQLPPK
SSVSDRRWHRLDILSDGKVVQLILDQCGGVTVSEAEGEESGCRAKGETPGHHRFLNVFQP
LQLGGVKETSPHRRYRSFTGCIRNLVVDSQVYDLASPGESVDSTPGCRLTDGVCVTAAGP
SCGPRASCLADWGSFSCECQPGFSGHKCDSALPEFSFDSGSVVRLQLRGGGSSRHTDVQL
LLRTRASSGTLLSMRSREPDAFIVLEISEGLLSVRANLGDGVHALRLPGQRVDVGQWVLV
GLSRHDNLFTLRLERGGGSREARAQLGGRREVEVHSLTLGSDEAGFQGCLRDVRFNGQLL
PLDGQSRDTVTVLQRGGVTAGCPSDACRGQPCRSPLTCTDLWRKHQCRCPGGQLTVTEAS
GQQRCAASPCAATSCRNAGVCQALSPDAFRCRCLDGFGGQRCELGAVKGHRLAALSPSSI
LAISMCLLVFFAVLVAVTVWNQKGSRNKFRKRGVYHIPAEHESWEDIRENILNYNEEGGG
EQDQNGYDISELKRPLGSSLSQSSSGPLIKSSSQEEVHPSGSSSSSGAPYLSIPHHHHHH
HHNPPPLQHAVYSDFTPPTFAPPSFAPSCSHGDFQSYVARILWEADSDGGALPPDALHLW
SVEGSGSGAGSLSSLGSTAGSRREEEEEEEEGFADERLSRWGPKFQALSEMYDRPQLGLT
HRDAVTHIQRGHSRDPLPLHH
NT seq
8346 nt
NT seq
+upstream
nt +downstream
nt
atgtacgagctgacggtgcagctgccgcgcggggccgccgccgtgcaggtggaggtgtcg
gacaggaacgacaacatcccccggttcatcggcgggaaccggacggtggaggtgcacgcc
ctcacgccgctcggaaccgaactggcgcgctttgacgcgaaggacggagacgcggagagg
aacggacgcgtcactttttacgcgtcaccggagtctcacctgctgcacttggctccgcag
accggccaggtgaggctggtccggtccctgctgggggtccgacaggcgactctgcgtctg
tgcgttcgtgacggaggatccgtggcgctgatcggggatccggtgtttcttcacgtcaac
gtgcagcactccggaaaaccccggaaaccccgagctgtcagggcggatgtggcgctcagc
gtgtcggtcccgcagcaggcggcgctcggggacctgctgttcaccgtgccggatcagagg
ttccagcagcgctggttccagctgctctccgaggccgactctccggtgcagatcgagcga
gactcggggcggatgtacctgacccgagatctgctggagcccgcagaggtgctggtgaag
atccacaactcccggggtgaggagtggtacctgtgcaggctgactctgagcctccccagc
caggcggccctgcagtgggccatgttcccctctccctacctgggggccgtggggcccgac
gcccccccgggctccgcggtgtaccagctgtcagctcgacaccgagaggagacgcccggg
caaacacagttcctcctcctggacggtggggaggagtgcttcgaggtggatcggcgctcg
ggtcagatcaggaccacggggcgacctctgaccccgagtaaggagtatgttcttcgggtg
caggcgctggacggcagcgggcagaaaggctcgccggccaccgtcgcaatcctcgccgga
taccgaccgccgcagttcaccaacgcctcctacagcctgaacgtacctgaaaacaccccc
gctggacagcctgtgtctgtggtgcaggcgctctccttccagaggaagagtgtgtcctac
atgctgcaggtgaaccctgggaacctgttcagcgtgcaccaggagagcggagcgctcagc
ctcacccggtccgtggactacgagagcggacactccgtccaccagctgagggtccgggcc
tccgaacccgacaccgggctcagcggcgccgcagaggtggtcgtccacatcacggatgaa
aacgactgcacgccagagttcctgcactccatctacaccagggacaacgttcctgagagc
acaccgccgggaacctccctgctgcaagttctggctcgtgactgtgactcagggttgaac
tctgatttgtcgtacttcgttcacggagaagactttgacatcacgtcggggggcgtggtc
agtcccgcccgtcgtcttgactacgagcgacccaatcacgtgtacgagttcgttgtggtt
gccgtggacgcggggtcgcccccccgcacgggcaccgcctctgtccgcatccgcgtcgcc
aacagcaacgacgaggcgcccgtcttctcccagagcgcgtataagacgttcctcagcgag
gacgccgggccggacacactcgtcgccatcgtccacgccaacgaccccgacggagacgcc
gtctcttacgccatcaccggcggcaacgaggacagcaacttcctgctggacaaacagaag
ggcatcattaagctgcggaggagcccccccccaaggctccggggtccgcagtacgtcctc
aacatcacggccacggacgacaacgcatcgggggggccgttccctctgagcagctcggcg
caggtcatcgtaggaatcaatgacatcaacaacaacaagccgctgttccaggagtgtccg
aactacagtctgaatgcggtggttctggagaaccagcctccggggactctggttctgcgg
gtccaggcccacgacgccgacatgggggtcaacggagaggtgaagtacggcatcatgaac
agagacggggtgtcgtctggcttcgacatcgaccctgacaccggtgtgatcgtcaccacg
gccagcttcgaccgggagttccagagggagcacatgctgtcggtgacggccaccgatcag
gccgaggagccgctcatcgggatctgccagatcaccgtgctcatcggagacgagaacgac
aacgaccccaagtttgaaaacagccgctaccagtacttcctacgggaggacactccggta
ggaactagttttctgcgggcggcggcgcacgatgacgaccaggggagcaacgcggccatc
acctactccctgaccaatcagaagccggcatacctgcacatcaaccccagcactggctgg
atctacgtcaaccaccccatctctcagacgtcccgcatcaatcagcaggtggtggcgtcg
gacggggggcagcgcagcagctccgtggatctgtccgtcatcatcaccaacgtccacaac
cagccgccgctgtgggagcagcccgagtactgggtcactgtcccggagaacagggcgcgg
gacgccagggtggagaccatcaaggcgacgtccccgctgggcgacccccgggtcacctac
aacctggaggagggtcaggtgccggagaccaacatgccggtgcggttctacatcaaaccc
aaccgggccgacagctccgcctccatcctggtggccgagaacctggactacgagaccacg
cgcctcttcacgctgcgagtgagggtccagaacgtggccgccgtcccgctcgcctccttc
accaccgtctacgtcaacgtgacagacgtgaacgacaacgtccccttcttcctgtcctcc
acctacgaggccacggtgcctgagggggcggaggtcggcacctccgtggctcaggtgtcc
gcctcagacctggactctggtctgcacggggaggtgcactatgtgatcctgaaggatgag
agtggtgactctcagttcttcagcatcgaccctctcagcggcgtcatcgtgactcaagcg
tctttcgaccgcgagcagaagtcctcgtatctgatcgaggtgcagagtcaggacggctca
gagtccgccaggccgggcctgcaggggcagcccaacaccgacacggcgtacgtcaggatc
ttcgtcacggacgtgaacgacaacgcgccggcattccctcgcccgcagtacgagctcagc
gtggaggaggaccaggaggtgggcttcaccctgctcaccgtcaccgccaacgacgaagac
gagggcgccaacgccaagctgcgctaccagatcacggcggggaacgcgatgggttccttc
gacgtggaacctgaggttggcaccatcttcgtggcccagccgctggacttcgagctggag
cagcgctacgagctgcgcctggtggcctccgacgggaagtgggagaacgagacgctggtg
gtggtgcaggtgctgaacctcaacgacgaggcgcccgtcttcagccgcagcgaataccag
gcgtccgtcaccgaggagctcactcagctgcccgtcttcctcctggaggtgtcggccaca
gatccggaccaggaagctgatcagaccgcgctccgttactccctccatggccagggcgcc
gatggagagttcactattgacgaacgcaccgggagaatctacgcccagcggcgcctggac
cgggaggagcgagcggcctggaggttcctcgtcttcgccaccgacgaggcaggggcagga
ctcacgggatttgcagatgtgttgttggaggtccgagacgtcaacgacaacgcgcccttc
ttcccgtgcccggcgctggaagtagacggatgttttgtcgggcaagtgcctgagaattcc
cctgcggacacctcggtcatggagatgcgcgccatggacctggacgacgccaacgagggc
aagaacgccatgatgacctacagcatcatcaagaacgtccgcaacgagattaacctcaac
ctgttctccatcaacgccagcagcgggaccatctacacggtgctgcgctcgctggaccgc
gaggtggaggagcgctatctggtggtggtggaggccagggacggagggggtttggcggga
acaggaacagccactatcatgatctcagacgtcaatgatcacccacctgtcttcactcag
agggtctatacaactcaggtgacggaggacctggaggtgaacagcgaggttcttgtagtt
tccgccacagacggagacgaaggagagaacgctgtggtgaccttcagcatcgtcggcggg
gacgaggacaggaagttcttcgtggagacagacaaagtgaacaggcgcggcgtgatcaaa
ctccagaagatggtggacttcgagaagccccgtgagaggacgttcaatctgacgctgaag
gcggaagacgctgatttcttcagcctggcctactgtctcgtgcaggtggaagactccaac
gaccacgcacctgtatttttccctcaattctacgagtctccagccatgtctgaagacgtt
cctgtgggcacgatcgttgctcaggtaacagcttctgatctggactcgggacaaaatggg
cgtttttcctacagtatttcaaaagactctgacccctacaatcagttcctggtggaccag
tccggttgggtggtggtggccgattctctggaccgggagaagatctcacagcacaggatc
atggtgctcgccacggacactgggagtccaccattgactggaactgccatcgtggtggtc
accgtactcgacattaacgacaacgggccggagttcgaggtgtcctataagcctgtggtt
tgggagaacatggccgcccctcaggcagtccgaatgaatgactcctccctactaatccac
gccaccgaccgggacacctccaccaacggcggcccgttctccattcgccttctcatgctc
acctccgacgccacaaacttcaacctgacggacttccgtaacggcagcgcggccatcact
gcgctccggaccttcgaccgcgagcgacagaaggagtaccgcctccccattctgatgatt
gacagcggctctcctccaatgagctccaccagcacgctcacggtggtgattggtgacagg
aatgaccaccctcactcctcgggtcacaccaactttgtcgtctacagttatgaaggtatt
ctcccgacgacggtgctcggacgagttcaatcccccgaccttgatgactggagtgagaag
gtttaccgttttgaaggaaaaccctccaggttgttcagtctgaaccagagctccggggcg
ctcagcctcagggagggggctcctccgggctcgtacctgctgcaggtgctcgtgtcggac
cgaacctggcccgacgtcacctcctcggctcaggtggaggtgagggagctgcagcaggag
gcgctgagcaacgccgcctccatccgcttcagcaacctgactctgcaggagttcttcagc
cgaggaggagtcgaggagagccggttctcccgtctgggtcgagtgctggcggatctcctg
gaggtttcaccggagaacgttcagatcttctctgtgcgggagaacggcctgcgggggggc
gagaagtcgctcagcgtttggtttgtggctcgaggctctccgtactacaagaaggagaag
ctgcacggcgacgtggccgcacacagagccaagctggaggccctgctggacgtgtccatc
tctcaggtgggcgtggatgaatgtcccgccacagactgcgctccgtctggcggctgcagc
agccaggtttccttcagccaggtcccagtggctctgagcagcgggaactcctccctggtg
tcgctgtcggcctcgtcctcagcgcagtgtggctgccgcggccgagaggaggtccacttc
ccctgcgcgacataccccacaaacccctgcctcaacgggggctcctgccaggacggaccg
ctgggattcaggtgtaaatgtcctcccatgtttgacgggcctgagtgccagcagaccaaa
cacagcttcgggggtcagggctatgcctggtttcctcccatcatgccttgcttccagagc
cacatctccgtggagttcctggctgagtcggccaatgggctgctcctctacgacgggccc
ctcggccccccccactccggggagcaggaggacttcatcgccttagagctgaggaacggc
gttcccgctctgagcgtaaaccacggatcaggaacgctgactctgcagctcccgccaaaa
tccagcgtgagcgaccggcgctggcaccgcctcgacatcctcagcgacgggaaggtggtg
cagctgatcctggaccagtgtgggggggtgacggtgagcgaggcggagggggaggagtcc
ggctgccgagcgaagggggagacgccgggacaccacaggtttctgaatgtcttccagccg
ctccagttgggaggagtgaaggaaacgtctcctcatcgacgttaccgcagcttcaccggc
tgcatccgcaacctggtggtggacagccaggtgtacgacctggcgtccccaggtgagagt
gtggacagcaccccagggtgccggctgacggacggggtgtgtgtgacggcagccgggccc
tcctgtgggccccgggcatcctgcctcgctgactggggctccttcagctgcgagtgccag
cccgggttcagcgggcacaagtgtgacagcgccctccctgagttctccttcgactccggc
agcgtcgtgcggctgcagctcagaggcggaggcagctctcgccacacagacgtccagctg
ctgctccggacccgagcctcctccggcaccttgctctccatgaggtcccgggagcccgac
gccttcatcgtgctggagatctcggagggtctgctctcggttcgtgctaacctcggtgac
ggtgtccacgccctgcgtctccccgggcaacgggtcgacgtcggacagtgggtgctggtc
ggactcagtcgccatgacaacctgttcaccctgcgtctggagcgggggggcggttcgagg
gaggcccgcgcccagctggggggtcggcgggaggtcgaggttcacagcctgacgctcggg
agcgacgaggccggctttcagggctgcctgagggacgttcgttttaacggccagctgctc
cctctggacgggcagagccgggacacggtgacggtgctgcagcgggggggcgtcaccgcg
gggtgccccagcgacgcctgcaggggtcagccctgccgcagcccgctgacctgcaccgac
ctctggaggaagcaccagtgcaggtgccccggcggtcagctgacggtgacggaggcctcg
gggcagcagcggtgcgcggcgtcgccctgcgctgccacttcctgtcgtaacgccggcgtg
tgccaggcgctgtcgcccgacgcgtttcgctgccgctgcctcgacggattcggggggcaa
cgctgcgagctgggagcggtcaaaggtcaccgcctcgccgccctcagccccagctccatc
ctcgccatcagcatgtgtctgctcgtcttcttcgccgtgctggtggcggtgacggtgtgg
aaccagaaaggaagccgcaacaagttcagaaagcgcggagtttaccacatccccgccgag
cacgagagctgggaggacatccgggaaaacatcctgaactacaacgaggaggggggggga
gagcaggaccagaacggatacgacatctctgagctgaagcgcccgctgggctccagcctg
tctcagtcctcctccggccccctcatcaagtcctccagccaggaggaggtgcacccgtca
ggttcttcctccagttccggcgctccgtacctcagcatcccccaccaccaccaccaccac
catcacaaccccccccccctacagcacgccgtctacagtgacttcaccccccccaccttc
gccccccccagcttcgccccctcttgctctcacggggacttccagagctacgtggcgagg
atcctgtgggaggcggacagcgacgggggggcgctgccgccggacgccctgcacttgtgg
agcgtggagggctcggggtccggggcggggagcctcagctcgctggggtccacggccggg
agcaggagggaggaggaggaggaggaggaggaagggtttgcggacgagagactgtctcga
tggggcccaaagttccaggctctgagcgagatgtacgaccggccccagctgggactcaca
cacagagacgcagtgacccacatccagaggggccacagccgagaccccctgcctctccac
cactag
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integrated database retrieval system
