Trematomus bernacchii (emerald rockcod): 117496668
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Entry
117496668 CDS
T09643
Symbol
irx5a
Name
(RefSeq) iroquois-class homeodomain protein IRX-5a isoform X1
KO
K24889
iroquois-class homeodomain protein IRX
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117496668 (irx5a)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
117496668 (irx5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Ciart
PGA2
Motif
Other DBs
NCBI-GeneID:
117496668
NCBI-ProteinID:
XP_034004277
LinkDB
All DBs
Position
Unknown
AA seq
451 aa
AA seq
DB search
MAYPQGYLYQPSASLALYSCPAYSSSVLSGPRTEELGRSSSGSAFAPYAGSTAFTSASPG
YNSHLSYSAADAAAAATFSSYVVSKLKGSPYDHTTGMAGSIGYHPYAASLGSYYGDPAYR
KNATRDATATLKAWLGEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM
TWTPRNRSEDEEEDENIDLEKNDDDEPNKPTDKGDSTDTESDHKLLNPGDMGCDRFKEES
HGKDSDPLLSDSELKEQEDQRTTELLLPDSAKPTTSSPSSVPRGNQAVAQQQDKPSDLSH
APASNVTSVIHSPPSAPKPKLWSLAEIATSSDRCKEPTHAGPGLGQSVILGNNASPSRSS
PQCPLPNSTVLSRPLYYTSPFYPGYTNYGGSFGHLHSNHGSGSTAHFNGLNQTVLNRAEA
LVRESHKVRGQTQVDLCKDSPYELKKGMSNI
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatcctcagggctacttgtaccagccgtccgcttctctagccctgtattcctgc
cctgcgtacagctccagcgtgttatcgggacccagaaccgaggaacttgggagatcctct
tcgggatctgcttttgctccctatgccggatctaccgcgttcaccagcgcctctccgggc
tacaactcccacttatcgtacagtgctgcagacgcggcagcagctgccacattcagctcg
tacgtggtgagtaaactaaagggctctccctatgaccacactacgggtatggccggctcg
ataggataccacccatacgcagcatccttgggctcctactacggtgacccagcgtaccgt
aaaaacgcaacacgggacgccaccgccaccctgaaggcctggctcggtgagcaccgtaag
aacccctaccccactaaaggagagaaaatcatgctggccatcatcaccaaaatgaccctc
acacaagtgtccacctggttcgccaacgccaggaggaggctaaagaaggagaacaagatg
acctggaccccccggaaccggagcgaggacgaggaggaggacgagaatattgatttggaa
aaaaacgacgacgacgagccaaacaagcccacagacaagggagactccacagacacagaa
tcagatcataaactgctgaacccaggggacatgggctgtgacagatttaaagaggagagc
catggcaaagactcggatccccttctgagcgactcggagttaaaagagcaggaggatcag
cggactacagagttgctgctgccggattccgccaaaccgaccacttcgtctccctcgtcg
gtgccccgggggaaccaggccgttgcgcaacaacaagacaagccgtcagatttgagccat
gcgccggccagcaacgtgacctctgttatccactcgcccccttcggcccccaaacccaaa
ctttggtcacttgcagagatcgccacgtcctcggacaggtgtaaggagccgacacatgct
ggcccggggttgggtcagagcgtaatactgggcaacaacgcgtctccatcacggtcctcc
ccccagtgcccactccccaacagcacggtcctatccaggcctctgtactacacctcccct
ttctaccccggttacacgaactatggtggcagttttggacatcttcacagtaaccacggc
tcgggctccacggcacatttcaatggattaaaccagactgtgttaaatagagcagaggct
ttggtaagagagagccataaagtcagaggccaaacgcaggtagatctttgtaaagactcc
ccttatgaactaaagaaaggtatgtcaaacatttaa
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