Trematomus bernacchii (emerald rockcod): 117496685
Help
Entry
117496685 CDS
T09643
Name
(RefSeq) thrombospondin type-1 domain-containing protein 4-like
KO
K23377
thrombospondin type-1 domain-containing protein 4
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
117496685
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tben04990
]
117496685
Domain-containing proteins not elsewhere classified [BR:
tben04990
]
Thrombospondin domain-containing proteins
ADAMTS-like proteins
117496685
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP1_ADAMTS
ADAMTS_spacer1
TSP_1
ADAMTS_CR_3
PLAC
TSP1_CCN
TSP1_spondin
TFIIA
Med3
Motif
Other DBs
NCBI-GeneID:
117496685
NCBI-ProteinID:
XP_034004301
LinkDB
All DBs
Position
Unknown
AA seq
983 aa
AA seq
DB search
MQEACVWISRASVLLLLLWSDLLHCQHTTDHRKVSQRPEPQQEFRAEHGEVQGSWGAWGS
WSACSRTCGKGVQEQSRPCLPVYTPSQYPSRREGVHPQQPGHIISALRPTVPLHRSAGRS
ANSSRRGDLRQGKEARPGGRRRVPHIVPGRYGYGSAPHVAPLQTHPGRSSETTRPHRQRR
SPAAEARHHQHQQQQQQQQQQHHQHHSPTADHNQNPSNSLHHPGRPFMPPRNNQVWAPLY
QPGSGPQTQDQQGPGSSLQTSGSPPERPYSPLPGSSCSGEQAHHRVCNSNACPPSSKHIR
AVQCSSHNNKPFMGRLYEWEPFNEVPEDQHCELNCRAVGFRFYVRQSEKVTDGTPCGQNE
TSLCVAGKCSGLGCDEYLGSGKVMDRCGVCGGENTTCRLVSGVFKHSLTKIGYHKIVEIP
EGATKINVTEMVKSRNYLALRSRSGRSIINGNWAIDRPGKYEGAGTMFTYRRPNEIRSTA
GESFLAEGPTNEILDVYMIFQQPNPGIHYEYTIPEKPVDPQPPNHRPEGNAVNGQGGYDI
HRNTHQENYNPAGGGRDPPRLPDNQVPAVQPPRRRDYNWKISGTTECSASCGKGFRYSIF
HCVSRLNQGQVSEALCDSSSKPSPQEEACNLQPCPAFWDIGEWSECSTTCGLGMQHRQVL
CRQIYANRTLNVHTSRCEHLERPEITSSCQLKICSEWQVRSEWSACSVPCGLGQRSREVR
CVSNVGDFVPDEECNMNLRPVDVENCDMGSCAKSWFYTEWGNRCSAECGMGVRTRGILCL
TNHVSGLPLEGCGSERPQNSQVCNSGACENRIEWFTGPWSQCSAECGAGSHQRAVVCLMK
SEEGLSVVPPYECSSLDRPLGQQSCTLKACGAKWFHTDWSACSKTCEGGFRVREVRCLSD
DSLPSDACDQKLKPGGREDCSPEPCTPNIDENCRDKYFNCNVVVQARLCVYDYYKTSCCA
SCSRVAQKQKQSVQRQSVQRSRS
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaagcctgtgtctggatttccagagcttctgtcctcctgctgctgctttggtcc
gacctcctgcactgccaacacaccacagaccacaggaaggtttctcagaggccagagccc
caacaggagttcagggccgagcatggagaagttcagggatcctggggtgcctggggctcc
tggtcagcctgctccaggacctgtggaaaaggagttcaggagcagagtcggccctgtctg
cctgtttacacgccgtcacaatacccctccagaagagagggtgttcacccccagcaaccg
ggacacatcatctcggcgctgaggccgaccgttcctctgcaccgcagcgcagggaggagt
gcaaacagcagcaggagaggagatctgaggcaggggaaggaggcgaggcctggaggacgg
aggagggtccctcacatcgtcccggggcggtacggctacgggtcggctcctcatgttgct
cctctgcagacgcacccgggtcggagctcagagacgactcgccctcacagacagagacgc
tcccctgcagctgaagcccgtcaccaccagcaccaacaacaacaacaacaacaacaacaa
caacaccaccaacaccattcccccactgcagaccacaaccagaacccctcaaacagcctc
catcaccccggcagacccttcatgccacccaggaataaccaggtctgggcccccctctac
cagccgggctctggcccccagactcaggaccagcaggggcccggatccagcctccagacc
tctggatcccccccggagagaccctacagccccctgcccggctcctcctgcagcggggag
caggcgcaccacagggtctgcaacagcaacgcctgccctccatccagcaaacacatccgg
gctgttcagtgttcttcacacaacaacaaacctttcatgggcagactgtacgagtgggaa
cctttcaacgaggtccccgaggatcagcactgtgaactgaactgccgagccgttgggttc
aggttctatgttcgacagtcagagaaagtgacggacgggacaccgtgcggacagaacgaa
acttctctctgcgtagcgggaaaatgttcgggtctgggctgcgatgagtacctgggatca
ggaaaggtgatggacaggtgcggtgtgtgtggaggagaaaacacaacctgcaggctcgtc
tctggagtcttcaaacacagtttaactaagatcggctaccacaagatagtggagatccca
gagggagccaccaagatcaacgtgacagagatggtgaagagcaggaactacctagctctc
cgcagccgatcggggcgatccatcattaatggaaactgggcgatcgaccggccagggaag
tatgagggagcgggaaccatgttcacataccggcggcccaacgagatcagaagcaccgcc
ggggagtccttcctcgctgaagggcccacaaacgagatcctggacgtttatatgatcttc
cagcagccaaaccctggtattcactatgagtacacaatccctgagaaaccagtggatcct
cagccacccaaccacagaccagaagggaacgctgtgaatggacagggaggatacgacatt
cacagaaacactcaccaggaaaactacaatccagcaggggggggtcgggaccctcctcgc
ctcccagataatcaggttcctgctgtgcagccgcccagacgcagagactacaactggaag
atatctggaactacagagtgcagcgcctcctgtgggaaaggattcagatactccatcttc
cactgtgtgtcccggctgaaccagggccaggtgtccgaggctctgtgtgacagcagcagc
aaaccctctccacaggaagaggcctgcaacctgcagccctgccccgcattctgggacatt
ggggagtggtcagagtgcagtacgacgtgcgggctgggcatgcagcaccggcaggttttg
tgtcggcagatttacgccaaccgcaccctgaacgttcacacgagccgctgcgaacactta
gagcgaccggagatcaccagcagctgccagctgaagatctgcagcgagtggcaggtccgc
tcagagtggagcgcgtgctcggtgccctgtggtctgggtcagaggtcacgagaggttcgc
tgtgtcagcaacgtgggcgactttgttcctgacgaggagtgcaacatgaatctgaggccg
gtcgatgtggagaactgcgacatggggtcctgcgccaagagctggttctacaccgagtgg
gggaacaggtgctcggctgagtgtgggatgggtgttcggacgcgaggaattctctgcctc
acgaaccacgtcagcggtctccctctcgagggctgcggcagcgagagaccccaaaactct
caggtctgcaacagcggagcttgtgagaaccgcatcgagtggttcacgggcccctggagc
cagtgctcagcagagtgcggtgcaggcagccatcagagggccgtggtgtgtttgatgaag
tcggaggaaggactctccgtcgttcctccgtacgagtgctcttctctggaccgacccctc
ggccagcagagctgcaccctgaaggcctgcggagcaaagtggttccacacggactggagc
gcttgttcaaaaacctgtgagggcggtttccgtgtgcgggaggttcgctgcctgtcggac
gactcgctgccgagcgacgcctgtgatcagaaactgaaacctggagggagagaggactgc
agcccggagccctgcacgccaaacatagatgagaactgcagagataagtacttcaactgt
aacgtggtggtccaggctcggctctgcgtctacgattactacaaaacctcctgctgtgcg
tcctgttcccgagtcgcccaaaaacaaaaacagtccgtccagagacagtccgtccagagg
agccgcagctaa
DBGET
integrated database retrieval system
