Trematomus bernacchii (emerald rockcod): 117496696
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Entry
117496696 CDS
T09643
Symbol
chd9
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tben03036
]
117496696 (chd9)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117496696 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
HTH_Hrp3
HDA2-3
Motif
Other DBs
NCBI-GeneID:
117496696
NCBI-ProteinID:
XP_034004318
LinkDB
All DBs
Position
Unknown
AA seq
2973 aa
AA seq
DB search
MDFFNDPSLFVGGLEGLEEDGFPSAPSLVDELNLTADFEPLQVEPLDPVKHQDMMPPVPT
QQAMPAYSQQMGHYIGIKAQNPMSQAFSGSGATGNGGGGGGMIADPHGQYHNAARSQVPQ
SNGLFCISSSPMWGNQDQNGKMYHPLTQQQQQLCHQQQQQLHNQQLHVRQQQTQQQQHHP
CHQQQEQQQHRMQQQQQLQQQQSHQQQLLNQHQQINTHAMSLQQQHFPFHQGGQSHSQQQ
VHHAQQQAQHQTAVGGPRFHPRAMPSKSYMEGQNASLSGTCLQPQQLQGSYQFTRGGLGP
EDPNLPFPMHSSSRVQSLPTAYQAAQYPAYPGEPDIPSLSQQSLSTDSVSMPPPPPPASL
STTVPELSGTVCPFPSTAVMRTPVSLAEECPFRALRCSGETQGNCGSSEMFGESMICYPS
LASQLPSEQPQSCGAINTNGYQALGDNLLPPQAQDGDLEGLEPPDLLPDLLPQLEAALSQ
QDESNHSWADSSQERGRKHKKPHVEYEEEKPRKNANGPGSQVRVLSPPMKSSSSSSSSSS
SSSSSSSSSSEKRTSRRTLAQMELGTPDKQEKANRIISEAIAKARQRGEKNIPRVLSPES
FPSSSSQHKHRKREHKGNGKARAKDKACRKARIITSSKNKQKAKIGKIVIKIGKKKKRKQ
ASSAESDDDPPPRHSSKDVDSKRRSNRQVKRKKYSEELEARLSDDEVKAIVKAKKTSSGG
SKQPAVQLFVENPSEEDAAVVDKIMSSRIVKKEVSPGVVVEDEEYFVKYKNYSYYQLXGA
TEQQLEKDKRIPAEIKRFKLKKAQRALFFADREEDPFNPDYIEVDRVLDVSYCEDKDTGE
EVVYYLVKWSSLAYEDSTWELKDDVEQSKIEEFEQLQAVKPDSRRTERPPANLWKKRDQS
REYRNGNGLRDYQLEGVNWLLFNWYNRRNCILADEMGLGKTIQSITFLEEICRVGIKGPF
LIIAPLSTIANWEREFRTWTYLNVIVYHGSMVSRQMLQQYEMYFRDAQGRVMRGAYKFQA
VITTFEMILGGCPILNAIDWRCVIIDEAHRLKNKNCKLLEGFKLMNLEHKALLTGTPLQN
TVEELFSLLHFLEPARFPSEVPFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKKLA
PKEETIIEVELTNIQKKYYRAILEKNFTFLAKGAGQANMPNLVNTMMELRKCCNHPYLIK
GAEEKIMEDFREVYSPNAFDFHLQAMVQSAGKLVLIDKLLPKMKAGGHRVLIFSQMVRCL
DILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSKPDSERFVFLLCTRAGGLGINLTAAD
TCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVL
QSMSGRDNSLGGATGGAAPPQQQLSKKEIEDLLRRGAYGAIMDDEDEGAKFCEEDIDQIL
QRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWDKWAQKADVDMEMANGRNSL
VIDTPRVRKQTRPFSATKDELAELSEGNSDSDDSKPKLRRNHDRLNSYGRTECFRVEKNL
LVYGWGRWKDILTHGRFKKQLTERDVESICRALLSYCLVHYRGDDKIKSFMWDLIAPSED
GQTKELQNHLGLSAPVPRGRKGKKMKIQSSSFDIHKAEWLRKHNPEHMLQDDGYKKHLKH
HCNKVLLRVRMLYYLKQEVIGSQAQRVLDGVDSSDIKIWVPDPDHSELPALWWDAIADKC
LLLGVYKHGYEKYNTLRADPTLCYLERVGRPDDKAIAAEQRGNDFMDGDVDDPEYKPAPA
LLKDDMEDDASSPGDLVVVDNAGDAVPVTGSQTSYWPSPSVLTARLRRLITASQRFTKSR
QILQIHQTQTPSPSSMMLSAPLCPLPPTLNDTLNPKMVAKIERQQRWTRREEADFYRVVS
TFGVVFDPSLGRFDWNKFRAMARLHKKTDESLQKYLCAFAAMCRRVCRLPPKEGDAAVEP
SLNIQPITEERASRTLYRVELLRQVREQVLRHELFYERLLLCQMSSDLPVWWEAGTHDRD
LLIGAAKHGVSRTDYHILRDPELSFMAAQRNYSQTKTAQQHSHTPTPLLHPQCQPSSSML
TGSPLPPPTHTDAELGGVVPKVEPASEGEEGREEGREKQAERWSPTRAPATPTGLEEKPL
FEMIGGEMQLVAACTKPITPNSSERKPKKAKRRRREAKRGSESDSGGSSSSSSSRSSSTS
SSSSSSSSHSGSSSSSSSSSCSSGSSSSSSSSSSSSDGSNSEGEEGKKKVPAAAMVKGFD
EDSVASLTMTQDETQEPHTAENGITNNSSHPFQGGGYMLAASYWPKDRVIINRLDSICQA
VLKGKWPGTRRVYEPGAVASFYTTKLLDNANSLCEDPSASPQGSKVTKHVAENKEFSVKL
NDQEGGLKLTFQKQGLPLKRPLESEEGPQAQQQYLARLQELQSASDTGLADITKPQCSFQ
SVPPGLPAQMRLNGALDGQPVVKRRRGRRKNVEGMDLLFMNRNRAPAVPDQVPPGWGGIG
QVAMAVAPVPGYSQSSSQAPADTDSRVPVINLKDGTRLAGEDAPRRKDLEQWLMEHPGFV
ADTGAYIPGVNKMQMQFHFQDGRPKQKRHRCRNPNKIDVNSLTGEERVQIINRRNARKVG
GAFAPPLKDLCRFLQENPEYGVPPEWADVVKQSGYLPESMFDRILTGPIVPEEVSRRGRR
PKNPLAKAAAAAAAAAAASAPNPAAMGLNPLLANGLLSGLDLSSLQAFQQNLQSLQSLQL
TAGLMGLPTDASNLAASNLAAMFPMMLSGMAGLPNLIGMSSLLGKPAQDGAGGFEEKTKG
SGAAGEPSASKASEPRGERTEGSNSTPSSTSSSSSSAPLSASAASSLSLNPLLLSSMLYP
GMLLTPGLNPPTQPQSSNSGPPLPPAGSSQEIARLAAQRDAEEDDEALEDDDEEEDDSAE
QKENSGPDGSGKAESSSSESGSSSSSDDSDSSD
NT seq
8922 nt
NT seq
+upstream
nt +downstream
nt
atggacttctttaatgaccccagcctctttgttggaggtttggaagggctggaggaggat
ggcttcccctcagctccatcacttgtggatgagctaaatctcactgctgactttgagccc
ctccaagtggagcctctagacccagtgaagcaccaggacatgatgccaccagttcctacc
caacaagccatgcccgcgtacagtcagcagatgggtcattacattggcattaaggcacag
aatccaatgagtcaagcattttctggttctggggccacaggtaacggaggaggtggcggc
ggcatgattgcagacccacatggccagtatcataatgctgccagaagccaagtacctcaa
tctaatgggctgttctgtatcagcagcagtcccatgtggggcaaccaagaccagaatgga
aaaatgtaccacccattaactcaacagcagcaacagctttgtcatcagcagcaacagcaa
ctgcacaaccagcaactccatgtcagacaacaacaaacacagcagcagcaacaccaccca
tgtcatcaacaacaggagcaacagcagcacagaatgcagcagcagcaacagctgcaacaa
cagcaaagtcatcagcaacagctgttgaaccagcaccaacaaatcaacacccatgcaatg
tccctacagcagcaacattttccttttcaccaaggaggtcaatctcatagtcagcagcag
gttcaccacgcccagcagcaggctcagcaccaaactgctgtaggaggaccaaggtttcat
ccaagggctatgccaagtaagtcttacatggagggtcaaaacgcttctctgagtggaact
tgcttgcaacctcagcagctgcagggaagctaccaatttacaaggggaggcctaggacca
gaagaccctaacctgccattccccatgcattcatcatccagggttcagtccctgcccact
gcttaccaggctgctcagtaccctgcctaccctggagagccagacatacccagtctcagt
cagcagtctttgtccacagactcagtgtctatgccaccaccacccccccctgcctccctc
tctactacagtgcctgagctctcagggacagtatgtccattcccatcaactgcagttatg
aggaccccagtaagcctggcagaggaatgtcctttccgggctttacgttgctctggagaa
acccagggaaactgcgggtcatctgagatgtttggcgagtctatgatctgctaccctagc
ctggccagccagctgccctctgagcagcctcagagctgcggggccatcaacactaatgga
tatcaagccttgggtgacaatctcctgccaccacaggctcaggatggagacttggagggc
cttgagcctcctgacctgctgcctgacctactgccccagctggaggcggctctaagccaa
caggatgaatccaaccattcctgggccgattccagccaggagaggggacgtaagcacaag
aaaccacatgttgagtacgaggaagaaaagcctcgaaagaacgctaatggtcccggcagc
caggtacgggtcctcagtcccccaatgaagagcagctcatcgtcctcctcctcttcctcg
tcgtcttcatcctcgtctagctcctcgtcggagaagaggacgtcgcggaggacgcttgct
cagatggagttgggtacaccggacaaacaggagaaggccaataggataatatcagaggct
attgctaaggcccggcagcgcggggagaagaacattcccagagttctgagccccgagagc
ttccccagctcttcctcgcagcacaagcaccgcaagcgcgagcacaaaggaaacggcaag
gcgcgggctaaagataaggcctgtaggaaggcccgaatcataacctcctcaaagaacaaa
cagaaggccaagatcgggaaaattgtcatcaagattgggaagaagaaaaaacgaaagcag
gcgtcttcagcggagtcagacgatgaccctccccctcgacactcttctaaggatgtagac
tctaagaggagatcaaatcggcaggtgaagagaaagaagtactctgaagagctggaggcc
cggctctcagatgacgaggtcaaggctattgtcaaagccaagaaaacgagctctggaggc
tccaagcagccggctgttcagctctttgtggagaaccccagtgaagaggacgctgcagtt
gttgacaaaatcatgtcttctcgtatcgtgaagaaggaggtttctccaggagtggtggtt
gaagacgaggagtattttgtaaaatacaaaaactactcctactaccaattgtgaggggcc
acagagcagcagctggagaaggacaagaggattccggcagagatcaaacgtttcaagctg
aagaaagcacagagggcactcttcttcgcagacagggaagaggacccctttaacccggac
tatatagaggtagacagagtgctggatgtgtcgtattgtgaggacaaagacacaggagag
gaggtggtgtactacctggtgaagtggagctctctggcttatgaagacagcacctgggag
ctgaaggacgacgtggaacagagcaagatagaagagtttgagcagctgcaggcagtgaag
ccagactctcgcaggacggagcgtcccccggccaatctgtggaagaagagggatcagtcg
agggaatacaggaatggcaacggcctcagggactaccagctagagggggtcaactggctc
ctcttcaactggtacaacagacggaactgcatcctggcagacgagatgggcttgggaaag
accatccagtccatcacattcctggaggagatctgccgtgtgggcattaaagggccattc
ctcatcatcgctccgctctccaccatcgctaactgggagcgcgagtttcgtacttggacc
tatctcaacgtcatcgtttaccacgggagcatggtcagcaggcagatgctgcagcagtac
gagatgtatttcagggacgcacagggccgtgtgatgcgaggggcctacaagttccaggcg
gtgatcaccacgttcgagatgatcctgggaggctgtcccattctcaacgccatagactgg
cgctgtgttatcatcgacgaagcccaccgcctcaagaacaagaactgcaagctgctagag
ggcttcaagctcatgaacctggagcacaaagccctgctgaccggtactcctctccagaac
actgtggaagaacttttcagcctgctccacttcctggagccggcacgcttcccctcagaa
gtccctttcatgcaggagtttggcgacctcaagactgaagagcaggtccagaagctgcag
gccatcctgaagcccatgatgctgcgccggctgaaggaggacgtggagaagaagctggct
cctaaagaggaaaccatcatcgaggtggagctcaccaacattcagaagaaatactaccgc
gctatcctcgagaagaacttcaccttcctggctaaaggagccggccaggccaatatgccc
aacctggtgaacaccatgatggagctgagaaagtgctgcaaccacccctacctcatcaaa
ggggcagaagagaagatcatggaggacttcagggaggtgtacagccccaatgccttcgac
ttccacctgcaggcgatggtacagtctgccgggaagctggtcctcatcgacaaactgctg
cccaagatgaaggccgggggccacagggtgctcatcttctctcagatggtgcgctgcctg
gacatcttggaagactacctcattcagagaaggtacttgtacgagcgtatagatggtcgt
gttcgtggaaacatgcgtcaggcagctatcgaccgcttcagtaagcccgactcagagcgc
ttcgttttccttctgtgcacacgcgctggtggcctgggaatcaacctcacagcagcagac
acctgcatcatctttgactcagactggaacccacagaacgacctgcaggcccaggctcgc
tgccaccggattggtcagaacaaggcagtgaaggtgtaccgtctgatcaccaggaactcg
tacgagcgggagatgtttgatcgcgccagcctcaagctgggcctggacaaagcggtgctg
cagagcatgagtggccgagataacagcctgggaggagccaccgggggggcggcccctccg
cagcagcagctgtctaagaaggagatcgaggatctgttgcgacggggggcttacggcgcc
atcatggacgatgaggatgaaggggccaaattctgtgaggaggacatcgatcagatcctc
cagcgccgcacaaagaccatcaccatcgagtctgagggccgaggatccacctttgctaag
gccagttttgtggcgtctggaaaccgcacagacatatctctggatgaccccaacttctgg
gacaaatgggcccaaaaggctgacgttgatatggaaatggctaacggcagaaacagcctg
gtgatcgacactcctcgcgtcagaaagcagacgaggccgttcagcgccaccaaggatgag
ctggccgagctttcagagggcaacagcgacagtgacgactccaaacctaaactcaggaga
aaccacgaccgcctcaacagctacgggcgcacagagtgcttcagagtggagaagaacctg
ctggtttatgggtggggtcgttggaaagatattctgacccacggtcgttttaagaagcag
ctgacggagagggatgtggagtccatctgcagggccctgctgtcttactgcctggtccat
taccgtggagatgacaaaatcaaaagcttcatgtgggacctgatcgctccttctgaggac
ggacaaaccaaggagctgcagaaccacctgggtctgtctgctccagtcccgcggggcagg
aaggggaagaagatgaagatccagtccagctcttttgacatccacaaagccgagtggctc
aggaaacacaacccagagcacatgctgcaggacgacggctacaagaaacacctcaaacac
cactgcaacaaggtgctgctcagggtcagaatgctctactacctgaaacaggaggtgata
ggaagccaggcccagagggttttagacggcgtggactccagtgatataaagatctgggtg
ccagaccctgaccactcggagctgccggccttgtggtgggacgccatcgctgacaagtgt
ctgctgctgggtgtctataagcatggttatgagaagtacaacactctgcgtgcggacccc
actctgtgttacctagagcgcgtgggacgtccggatgataaggccatcgctgccgaacag
agaggcaacgacttcatggacggggatgtggatgacccagagtacaagcctgcccccgcc
ctgctgaaggacgatatggaggatgacgcctcttctcctggagatctcgttgtcgttgac
aatgccggagatgcagttccagtgactggaagtcagacttcctactggccttccccctca
gtgctgactgccaggctgaggcggctgatcacagcctctcagcgcttcaccaagagccgg
cagatcctccagatccaccagacgcagactccgtctccctcctccatgatgctgtccgct
cccctctgcccactgccccccacactcaacgacaccctcaaccccaagatggtcgctaag
attgaacggcaacaaagatggacgaggcgagaagaggctgacttctaccgtgtggtctct
acttttggagtcgttttcgacccgagcctcggccggtttgactggaacaagttcagagcc
atggctcggctgcacaagaagaccgacgagagcctgcagaaatacctgtgtgcttttgcc
gccatgtgccggagggtgtgccgcctgccacccaaagagggagacgctgcggtggagccg
tccctgaacatccagcccatcacagaggagcgagcgtctcgaacgctttacagggtggag
ctgcttcgccaggtgagggaacaagtccttcgccacgagctgttctacgagcgcctgctg
ttgtgccagatgagctccgacctgcccgtctggtgggaggcaggaacccacgaccgagac
ctgctcatcggggccgccaagcacggagtcagccgcacagattaccacatcctgagggac
cccgagctcagcttcatggcggcacagcgcaactacagccaaacaaagaccgctcagcag
cattcacacacacccacccctctcctacaccctcagtgccagcccagcagctccatgttg
acgggctctccgctgcctcctccgacccacacagacgcagagctcggtggggtcgtaccc
aaagtggagccggcctcagagggggaggagggcagggaggagggcagggagaagcaggcg
gagagatggagcccaactcgagcaccagcgactcccacgggtctggaggagaagccgctg
tttgagatgattggtggcgagatgcagttggttgcagcgtgcaccaagcccatcaccccc
aactcctccgagaggaaacccaagaaggccaagaggcgccgcagggaggccaagaggggc
tctgagtccgactcaggcggctcctcctccagctcttcgtcgcgctcctcttccacctcc
tcatcctcctcttcttcctcatcacattccgggtccagctcctcgtcctcttcgtcgtct
tgctcctctggttcctcgtcatcatcgtcttcctcctcgtcttcttccgatggcagcaac
agtgagggagaggaagggaagaagaaagtgcctgcagcagcaatggtgaagggctttgac
gaggacagcgtggcgtctctgaccatgacgcaggatgaaacccaggaacctcacacggct
gagaacggcatcaccaacaactcctcacatcccttccagggaggagggtacatgctcgct
gcatcctactggccaaaggatcgtgtgatcatcaaccgcctggacagcatctgccaggcg
gtgctgaaaggcaagtggccgggaacacgtcgggtgtacgagcccggtgccgtggcctcc
ttctacacaaccaagctgctggacaatgccaacagtctgtgcgaggacccctccgcttct
ccacaggggtcaaaggtgaccaagcatgttgcagaaaacaaggagttctcagtaaaactc
aacgatcaggagggaggtctgaagttgaccttccagaaacaaggtctacctctgaagcgg
cccctggagtcggaggaggggccccaggcgcagcagcagtacctggcccgccttcaggag
ctgcagagcgcctcggacaccggcctggccgacatcaccaagcctcagtgcagcttccag
agcgttcctccaggtctccctgctcagatgaggctgaacggagcactggacggccagcca
gtggtgaagaggcggagagggaggaggaagaacgtggaggggatggacctgctcttcatg
aacaggaacagagcccctgctgttcctgatcaggtgcctccagggtgggggggtattggt
caggtggccatggctgtggccccggtgccgggctacagccagagctccagtcaggcgccc
gcagacactgacagccgggtgcccgtcatcaacctcaaagacggcactcggctggcaggg
gaggacgccccccggaggaaagatctggaacagtggctgatggagcaccctggctttgtg
gcagacacaggagcctacatccctggggtgaataagatgcaaatgcagttccacttccag
gacggtcggcccaaacagaagaggcaccgctgcaggaacccaaacaagatcgatgtgaac
agcctgaccggagaggagagggtccagatcatcaacaggaggaatgcacgcaaggtcggt
ggagcgtttgctcctcctctgaaggatctgtgccggttccttcaggagaaccccgagtac
ggagtcccacctgaatgggctgatgtcgtcaaacagtcgggttacctcccagagagcatg
tttgacaggatcctgacgggacccatcgttcctgaggaggtgagccggcgtggacgtcga
cccaagaaccctctggccaaggcagcagcggcagcagcagcagcagcagcagcttcagcc
ccaaaccccgctgccatgggcctgaaccccctgctggccaacgggctgctctctgggctg
gacctcagcagcctgcaggccttccagcagaacctgcagagcctccagagcctgcagctc
accgccggcctcatggggctgccgaccgacgccagcaacctggccgccagcaacctagcc
gccatgtttcccatgatgctctctggtatggccggattgcctaacctgattggcatgagc
agcctgctggggaagccggctcaggacggcgcaggaggcttcgaggagaagacaaaggga
agcggcgcagcaggagaaccgtctgcctcgaaagcctcagagcccagaggagaaaggaca
gagggctcaaactccactccttcctccacttccagctcctcttcctccgccccactaagt
gcttcagctgcctcttcactgtctctcaaccccttgttactctccagtatgctttaccca
gggatgcttctcactccaggccttaacccccccacacagccgcagagctctaactctggc
cccccccttcctcctgcaggctcttcgcaggagatcgctcggctagcggcacagagggac
gcagaggaggatgacgaggcattagaagacgatgatgaagaagaagatgactcagcagaa
cagaaggagaacagtggtcctgacggttcggggaaagctgagtcatcttcctcagagtct
gggagctcctcttcatcggatgattcagactccagtgattag
DBGET
integrated database retrieval system
