Trematomus bernacchii (emerald rockcod): 117496819
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Entry
117496819 CDS
T09643
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117496819 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117496819 (usp39)
Spliceosome [BR:
tben03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
117496819 (usp39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
117496819
NCBI-ProteinID:
XP_034004491
LinkDB
All DBs
Position
Unknown
AA seq
502 aa
AA seq
DB search
MMVSMKREREAEVDDDEDDEDIVAAKVGRGRAAEDRRSRHCPYLDTINRSVLDFDFEKLC
SISLSHINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEIIDS
SLEDITYVLKPTFTKQHIGGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQAFS
NVPPLRNYFLEEDNYMGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQAVV
LCSKKNFQITKQGDAVDFMTWFLNALHGALGGTKKKTSSITKAFQGSMRIFSKKLPHPDC
TPEEKEALLVTEEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLIIPQVPLFNILGKFNGS
TEKEYKTYKENFLKRFQLTKLPPYLVFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLT
EEAQVTEKNTTYDLVANVVHDGKPTEGAYRIHVLHHGTGKWYEMQDLQVTDILPQMITLS
EAYIQIWKRQESDTDTNNHTAV
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgatggtttctatgaagcgagaaagagaggctgaagtggacgatgatgaggacgacgaa
gacatagtggcagccaaagtaggccgaggacgtgcagcagaagaccggagaagccgccac
tgtccttacctcgacactataaacaggagtgtgctggactttgactttgagaaactgtgc
tccatatcactctcccacatcaatgtctacgcctgccttatatgtgggaaatactttcaa
ggtagaggtttgaagtctcatgcttacacgcacagtgtgcagtttacccatcatgtgttc
ctgaatctgcacactctcaagttttactgtctgccagacaactacgagatcattgactcc
tcactagaagacatcacgtatgtgctgaaaccaactttcaccaagcagcacattggaggg
ctggacaagcagggtaaactgtaccgagcctacgatggtacgacctacctgcctggcatc
gtagggctcaacaacattaaagccaacgactacgccaatgtggttttacaggctttttcc
aatgttccaccgctgcgaaactacttccttgaggaggacaactacatggggatccggaga
ccaccgggggacatcatgttcctcttggtgcagaggttcggtgagctgatgcgcaaactt
tggaatccgagaaacttcaaggctcatgtttctccacatgagatgctgcaagctgttgtg
ctgtgcagcaagaagaactttcaaatcaccaaacaaggagatgctgtggacttcatgacg
tggttcttgaatgctctgcatggtgctctgggaggcacaaagaaaaaaacatcaagcatc
acaaaagcgtttcaaggctccatgcggatcttttcaaagaaacttccacacccagattgt
acaccagaagagaaagaggcgttgcttgtgacggaggaataccaggagcagatgtcagag
tccaccttcctgtttctgacccttgacctcccaacagctccactgtacaaggatgagaag
gagcagctcattatcccacaggttcccctcttcaacatcctggggaagttcaatggcagc
acggagaaggagtacaaaacctacaaagagaatttcctcaaaaggttccagttgaccaaa
ctgcctccgtacctcgtcttttgcatcaaaagattcaccaagaacaacttcttcgtggag
aagaaccccacaatcgtcaacttccccatcacgaatgtagaccttcgtgagtacttgaca
gaagaagctcaagtgacagagaaaaacacaacatatgacctcgtcgccaacgtagtgcat
gatgggaaaccaaccgagggagcatacagaatacatgttctgcatcatggaactgggaag
tggtatgagatgcaggacctgcaggtgaccgacattctcccccagatgatcacactgtcc
gaggcctacatccagatctggaagagacaggagagtgacacggacacaaacaaccacacg
gcggtgtaa
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