Trematomus bernacchii (emerald rockcod): 117497139
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Entry
117497139 CDS
T09643
Symbol
smc6
Name
(RefSeq) structural maintenance of chromosomes protein 6 isoform X1
KO
K22804
structural maintenance of chromosomes protein 6
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tben03400
]
117497139 (smc6)
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
117497139 (smc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
TMF_TATA_bd
Laminin_I
zf-C4H2
AAA_29
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
117497139
NCBI-ProteinID:
XP_034004937
LinkDB
All DBs
Position
Unknown
AA seq
1070 aa
AA seq
DB search
MSKSRGGVMVSGGKRRRVSDERDSSNTGDIGLIESIALKNFMCHRLLGPFQFGPNVNFIV
GNNGSGKSAILTALIVGLGGKATDTNRGTSVKDFVKTGETSAEITVTLRNRGLDAFKRDV
YGDSISIERRIFSDGSRTCKLKSKTGQLISNKKEELTSILDHFNIQLDNPVSILNQEMSK
QFLHSKSESDKYQFFMKATLLYQMKRDFVHIKQTKTLTRQQVERQEEALKDLKLDFLQKK
ERFEALYSFSDMKELLPSLQRNMAWSLVRDKEQFVQRLKEDVEKEESNQKHQENLKLCQT
KLTAAEQKLRGVRSRIESVTQEQEALSEGHLRLKEQLKVVGKEHNEQEIVYFRALNKFKE
SEREQNYLQEKINKARTSLSESKDGETEYSKQQKRIVSLRKHLEELEETHSQLNEEIKNE
HQVLFTGREERDKLRLEERNIQVLLESKVRRRNQVLASRSNKLKRFGDQVPDLMISIDEA
NAAGRFKKKPIGPLGAFISLKDPLLAAAVEACLRSFMKAFCCDNHRDEALLQEIMRRHYT
KGNRPQINVSQFSEKLYNLHGRKALHTDFPSLLDVITVTSPVVFNCLIDMRGVESILIIK
EKEVARQVMQQSRPPKNCREAFTAEGDQVFPNRYYTSDCNRAKYLGGDLETEISVLDCDL
ENLQAQLSHLQLQVCCVSADIQKMENGLNRTVLNLKRNLASVNQVKASISELEAAGEEHI
EDICSLEEVAEESRQKMEAERQAMIEEKEELEKHGENVENKESRDSSVRERIDRLCEEVE
TMKEEQLKLEAECSKHEQSLQVLEKELKSHVEAIRQMKSDLAQAEEALQECVSKASEISP
QRQVVSASSTSLDTEITRMQRKIKVYESIHGEQQQVVREYADALSLFRQKSKQVRDLRRF
IDRLQHIISDRQSRYKVLRRSLSFRCKLYFNNFMIKMNCCGSMIFDHNNETLSISVMPPG
REDEGVVSDMRSLSGGERSFSTVCFMLSLWEITESPFRCLDEFDVYMDMHNRRISLDLLL
ELSERQTLRQFIFVTPLTTSNLPKSRLIKIHKLQDPERICSEAQEEEEDV
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagagcagaggaggagtgatggtgtcgggggggaagagacggagggtttctgac
gagagagactccagcaacacgggggacattggtctgatcgagagcatcgctctgaagaac
ttcatgtgtcaccgtctgctcggacccttccagttcggacccaacgtcaacttcatcgtg
ggaaacaacggcagtgggaagagtgcgattctgacggctctgatcgtcggtctcggagga
aaagcaacggacacgaacagagggacgtctgtgaaggactttgtgaagaccggcgagact
tctgcagaaatcaccgtgacgctaagaaacagaggactggacgcttttaaaagagacgtc
tacggagacagcatctccatcgagagacgcatcttcagcgatggcagccggacctgcaag
ctgaagagcaaaacgggacagcttatctcgaacaagaaggaggagctgacctccattctg
gaccactttaacatccagctggataaccccgtgtccatcctgaaccaggagatgagtaaa
cagttcctgcattcaaagagtgaatcagacaaataccagttcttcatgaaggcgacgctc
ctgtatcagatgaagagggattttgttcacatcaaacaaaccaaaaccctcaccagacag
caggtggagagacaggaggaggctctgaaggacctgaagctggacttcctgcagaagaag
gagcgcttcgaggcgctgtactccttcagcgacatgaaggagctgctgccgagcctccag
aggaacatggcctggagtctggtgcgagataaggagcagtttgtgcagcggttaaaggag
gacgtggagaaagaggagagtaatcagaaacatcaggagaacctcaagctctgccagact
aagctcacagcagcagagcagaagctgcggggcgttagaagcagaattgaaagtgtgacg
caggaacaggaagctctttctgaaggtcatctgaggttaaaggagcagctgaaggtcgtc
ggcaaagagcacaatgaacaggagatcgtttattttagggctctgaacaaattcaaagag
tcggagcgagagcagaactatcttcaggagaaaataaacaaggcgagaacaagtctcagt
gagagtaaagatggagagacggagtattcgaagcagcagaagaggatcgtgagtttgagg
aagcatctggaggaactcgaggaaacgcattcgcagctgaacgaggaaataaagaacgag
catcaggtgctgttcacaggaagagaggagcgcgacaaactcagactggaggagaggaac
atccaggttctgttggagtccaaagtgaggaggaggaaccaggttctggccagccggtcc
aacaaactgaagcgtttcggagaccaagttccagacctgatgatttccattgatgaggcg
aacgctgccggacgcttcaagaaaaaacccatcggacccctgggggcgttcatcagcctg
aaggaccccctgctggcagcagctgtggaggcgtgtctgcgcagcttcatgaaggcgttc
tgctgcgataaccaccgcgacgaggcgctgctgcaggagatcatgaggcggcattatacg
aaaggaaaccgaccgcagatcaacgtcagccagttctccgagaaactctacaacctgcac
gggaggaaggctcttcatacagactttccctcgctgctcgacgtcatcaccgtcacgagt
ccggtcgtcttcaactgtctgatcgacatgagaggcgtcgagtccatcctcatcatcaag
gagaaagaggtggctcggcaggtaatgcagcagagtcgtcctccgaagaactgccgagag
gcgtttactgccgagggagatcaggtgtttcctaacagatactacacctccgactgcaac
agggccaaatacctgggaggagatctggagacagagatcagtgttctggactgtgacctg
gagaacctccaggcccagctgagccacttgcagctgcaggtctgctgcgtcagcgccgac
atccagaagatggagaacggactgaacagaaccgtcctgaacctgaagaggaacctggct
tctgtgaatcaggtgaaagcatcgatatcagagctggaggcggcgggggaggagcacatc
gaggacatctgctctttggaggaggttgctgaggagagtcggcagaagatggaggccgag
cggcaggcgatgatcgaggagaaagaagagctggaaaaacatggagaaaacgtagaaaac
aaggaatcgagagactcgtcggtcagagagagaatcgatcgactctgtgaggaagtcgag
acgatgaaggaggagcagttgaagctggaggctgagtgcagcaaacatgaacaaagcctc
caggttttagagaaggaactgaagagtcatgtagaagctatccgacagatgaagagtgac
ctcgctcaggcagaggaagcgttgcaggagtgtgtgagtaaagcgtcagagatcagtcct
cagcgacaggtcgtgtccgccagctcgacgagtttggacaccgaaataactcgaatgcag
aggaagatcaaagtttacgagagcattcacggagagcagcagcaggtggtgagggagtac
gctgacgcgctttctctgttcagacagaagagcaaacaggtgagagacctgcggagattc
atcgaccgccttcaacacatcatatcggacagacagagcagatacaaggtcctgaggagg
tctctatcgttcaggtgtaaattatattttaataacttcatgataaagatgaactgctgc
ggctccatgatcttcgaccacaacaacgagacgctctccatctccgtgatgcccccgggc
agggaggatgagggggtggtgagtgacatgcgctctctgagtggaggcgagcgctcgttc
tccaccgtctgcttcatgctctctctgtgggagatcacagagtctccattcaggtgcctc
gacgagttcgacgtctacatggatatgcacaaccggcggatctctctggatctcctgctg
gagctttctgagcgacagacccttcgtcagttcatcttcgtcactcctctcaccaccagc
aatcttccaaaatccagactgataaagatccacaagctgcaggatccagagagaatctgc
agcgaggctcaggaggaagaagaggacgtttaa
DBGET
integrated database retrieval system
