Trematomus bernacchii (emerald rockcod): 117497198
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Entry
117497198 CDS
T09643
Symbol
acanb
Name
(RefSeq) aggrecan core protein
KO
K06792
aggrecan 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tben00535
]
117497198 (acanb)
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117497198 (acanb)
04091 Lectins [BR:
tben04091
]
117497198 (acanb)
Proteoglycans [BR:
tben00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
117497198 (acanb)
Glycosaminoglycan binding proteins [BR:
tben00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
117497198 (acanb)
Lectins [BR:
tben04091
]
C-Type lectins
Lecticans
117497198 (acanb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
UL45
PGDH_inter
Ig_CD22
Motif
Other DBs
NCBI-GeneID:
117497198
NCBI-ProteinID:
XP_034004955
LinkDB
All DBs
Position
Unknown
AA seq
1298 aa
AA seq
DB search
MTPLLLLCVSLPFIAATVVLQLENHDDMDGTMRVSIPLEVPLRPLLGSKVVVPCYFQDNT
VNDPGVRTVTPLSHRIKWSYVSKEKVTTILVASEGKVQVETEYLDRVTMINYPLVATDAT
MEITELRSKDSGTYRCEVLHGIEDNYDSVDIQVQGIVFHYRAITTRYSLTYEKAKAACLQ
NSATIATPAQLQAAYDDGYHQCDAGWLSDQTVRYPIREPREHCFGDKEEFPGVRTYGVRD
VNETYDVYCFAEKLSGRVFYSMSVEKFSFYEAGDQCNKLGARLANTGELYLAWKDGMDVC
NAGWLGDRSVRYPINIARPQCGGGLIGVRTVYLFPNQTGYPYPDSRYDAVCFQAGEDSNA
IPVRTTPFPDIIRMTPPPGPHPGFTPSPGAEESKTGGVDTLFALPIPPSMTDVDTAMAPT
GVVFHYRPITGRYTLSFVAAQQACQSVGAVIASGQQLQAAFEKGLHQCDAGWLRDQTVRY
PIVSPRDNCAGNLPHIPGVRSYGLRPASEQFDVFCYMERLKGEVFFTSDYDSFSYEEAVQ
HCQKLNTTLATTGQLFAAWNQGLDKCRPGWLLDRSVRFPITTPRSHCGGGQVGVHMIYAY
PNQTGFPDEHSRYDAYCFKAEIPVDHVDNETSIDLIDFLTVDVINKTIVKVDHSVPTVDT
TVHYNETETSVNITEIEEFVNKTTVTTQQVAPTVSPILPPIPVDVSGSGSAEHSTSGEIP
EESITSGSSGDSSGSGQVLFSGRPDVFSGGESTSGGPQEAEGGSAVFVSSGEGGSQSGSG
SEEGFDGQHSGFKSSGSGFTSGSGDISGSSGDSMIIMVDGNMKEVWPTPPRPTEQEWGQG
GIDSSGVNLESSASGSGSMSGSGSGGISGISFVDQGGVDLTVQPSGEQEVSGYRPFGSGF
HSGFTSGVSGSGSGSEDFIQHRGDVIYLTDNNMMEVTEAPQIRHPEHGRGVVEISGQGSG
SGSHHEFSGTFDINMHHSGSGVLHELSSQTTIYEETTRTDQSGHEEEDQERQAEPTVYAV
TPDAAYTSPTTAPSVSYATPSVMEQPEVVEDPCDPNPCGSGSCSVQEELAVCQCPTGFSG
VDCSTPVQGCAEGWLEFKGSCYLHFAERDTWSEAEQRCQEVNAHLVSIGSQDEQQFVNSN
GQDYQWIGLNDKDVQNQFRWTDGSPLSFENWRPNQPDNYFNSEEDCVVMIWHEGGQWNDV
PCNYHLPFTCKTGPAMCGSPPEVEHSRPMGSGRERYPVDSIVRYQCDAGYTQRHLPVIRC
LPDGQWEQPQVECTEAGANSNRLHKRSLRRRSKGVRSQ
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atgacccccctgcttctgctgtgtgtgtccttgcccttcatcgcggcaactgtagtgtta
cagcttgaaaaccatgacgacatggacggcacgatgcgtgtcagcatccccttggaggtg
cctctgcgtcctctgctgggcagcaaggtggtcgtaccgtgttacttccaggacaacaca
gtgaatgaccccggggtccgcaccgtgaccccgctctcacaccgcatcaaatggagctat
gtctccaaggagaaagtcaccacgatcctggtggcgtccgaggggaaagtccaggtggag
acggagtatctagacagagtgacgatgatcaactacccactggtggccaccgacgccacc
atggagatcacagagctgcggtccaaagactcgggaacgtaccgctgcgaggtgctgcac
ggcatcgaggacaactacgactctgtggacattcaggttcagggtattgtgttccactac
cgggccatcaccacccgctacagcctgacatacgagaaggcgaaggccgcctgcctccag
aacagcgccaccatcgccacccccgcccagctgcaggcggcctacgatgacggataccac
cagtgtgatgctggatggctctctgatcagactgtcaggtatccgatccgtgagcccaga
gagcattgctttggagacaaggaggaattcccaggcgtgagaacctatggcgtgagagat
gtcaacgagacctacgacgtgtactgttttgctgagaaactttcaggcagggtcttctac
tccatgtctgtagaaaagtttagtttctacgaagcaggagatcagtgtaacaaactgggc
gctcggctcgccaacaccggagagctctacctggcctggaaggacggcatggacgtgtgt
aacgccggctggctgggagacaggagcgttcgctaccccatcaacatcgccaggcctcag
tgtggaggggggctcattggagtgagaaccgtctacctgttccccaaccagacaggatac
ccctacccagactctcgctatgatgccgtctgcttccaagctggagaggattccaatgct
attcccgtgagaacgacccctttcccagacattatccgcatgacacccccccctgggccg
cacccgggcttcaccccctcaccgggagcagaggagagcaagactggaggagttgacacc
ttgttcgcattgcccatcccacctagtatgacagatgtagatactgccatggctccaaca
ggtgtggtgtttcactaccgtcccatcaccggtcggtacactctgagcttcgtggcggct
cagcaggcgtgtcagagcgtcggcgcggtcatcgccagcggccagcagctgcaggcggcc
ttcgagaaaggtcttcaccaatgtgacgccggctggctgcgagaccagactgtcaggtat
cccatcgtgtcgcccagagataactgtgctggtaatctgcctcacatccccggagtccga
tcctacggcctgagaccagcaagcgaacaattcgatgtgttttgttatatggaacgtctg
aaaggtgaggtcttcttcaccagtgactacgacagcttctcgtacgaggaggctgtgcag
cactgtcagaaactcaacacgacgctggccaccaccggacagctgtttgccgcctggaac
caggggctggataagtgccgcccgggctggttgttggaccgcagcgtccgcttccccatc
acaacccccaggtcccactgtggaggagggcaggtcggcgtccacatgatctacgcctac
cccaaccagacaggattccccgatgagcactcacgctacgacgcctattgtttcaaagct
gaaattccagtcgaccacgttgacaatgaaaccagtattgatctgattgatttcttgacg
gtggatgtgataaacaagacaatagtcaaagttgatcactcggttcccacagttgacacc
actgtacactacaatgaaactgaaaccagtgtaaacattaccgaaatagaggagtttgtc
aacaagacaaccgtcacaactcaacaagttgctcccactgtgagtccaattttacctcca
atccctgttgatgtgtccggctctggatcagctgaacattcaaccagcggagagatccca
gaggagtccatcacctcggggtccagtggtgattcctccggttcgggacaggtcctcttc
agcggacgccctgacgtcttctccgggggtgagtccacctctggagggccgcaggaggca
gaaggaggaagcgccgtgttcgtctcatccggagaaggtggtagtcaatctggatctgga
tctgaggaagggttcgacggacagcactctggcttcaagtcatccggatcaggttttacc
agcggaagtggggacattagtggtagcagtggagactcaatgatcatcatggtggacggg
aatatgaaggaggtgtggccaactcccccaagacccactgagcaggagtggggccaggga
ggcattgacagcagtggggttaacttggagtcgagcgcctctggatctggaagtatgtcc
gggtcaggctccggtggaatttctggcatctcattcgtcgaccagggtggcgtcgacctg
acagtccagccgtccggtgagcaggaggtgtctggatatcgtccgtttggatccgggttc
cacagcggctttacatccggtgtctcaggcagcggctccggctccgaggactttatccag
catcgaggggacgtcatctacctcacggacaacaacatgatggaagtgaccgaagcgcca
cagatacgccacccagagcatggccgaggagtggtggagatcagcgggcaaggcagtggg
tcagggagccatcatgagttcagtggcaccttcgacattaacatgcatcactccggaagt
ggagtccttcatgaattatcttctcagactacaatctatgaggaaactaccagaaccgac
caatcaggacacgaggaagaggatcaggaaagacaggcagaacctacagtttatgccgtg
actccagacgcagcctacaccagccctaccacagcaccgtcggtgtcctacgcaactcct
tctgtcatggagcagcctgaagtagtggaagacccctgtgatccaaacccctgcggttca
gggtcctgctcggtgcaggaggagctcgccgtgtgtcagtgtccgactggtttctctggg
gtagactgctcgacacctgtgcagggctgtgcagagggctggctggagttcaagggcagc
tgttacctccactttgctgagagagacacctggtctgaggccgagcagcgctgccaggag
gtcaacgcccacctggtcagcatcggctcccaggacgagcagcagtttgtcaactccaat
ggccaggactaccagtggattggactgaacgacaaagacgtgcagaatcagttccgctgg
acagacggcagtcctctgtcttttgagaactggaggcccaaccagccagataactacttc
aactctgaggaggactgtgtggtgatgatctggcacgagggcggacagtggaacgacgtg
ccctgcaactaccacctccccttcacctgcaagactggacctgccatgtgtggatcccct
cctgaggtggagcacagccggccgatgggcagcggcagagagcgataccccgtcgactct
atagtccgctaccagtgtgacgccggctacacacagcgccacctgcccgtcatccgctgc
ctgcccgacggacagtgggagcagcctcaagtggaatgtacagaagccggcgccaacagc
aacaggctacacaaaagatccctcaggaggagaagtaaaggcgtcaggagccaatag
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integrated database retrieval system
