Trematomus bernacchii (emerald rockcod): 117497202
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Entry
117497202 CDS
T09643
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117497202 (lingo1a)
Membrane trafficking [BR:
tben04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
117497202 (lingo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
LRR_1
Ig_3
ig
Ig_2
LRR_9
LRR_Zer-1
LRRNT
Ig_C17orf99
V-set
Motif
Other DBs
NCBI-GeneID:
117497202
NCBI-ProteinID:
XP_034004963
LinkDB
All DBs
Position
Unknown
AA seq
614 aa
AA seq
DB search
MAAREATGHSYLVAFWQPILILMLGAVLSGSTTGCPSRCECNVQERSVMCHRKKLMTVPE
GIPAETKLLDLSKNRIRTINPDEFAIFPNLENLELSENTISTIEPGAFNNLYGLRTLGLR
SNKLKLIQLGVFTGLSNLTQLDISENKIVILLDYMFQDLYNLRSLEVGDNDLVFISHRAF
HGLSSLEHLSLEKCNLSSVPTDAFTHLHNLITLRLRLLNINVIRDYSFKRLYRLKVLEIA
NWPYLDTMTPNCLYGLNLTSLTIANANLTTIPYVALRHLVYLRFLNISYNPIHTIEGNKL
HDLLRLQEFHLVGGRLAMIEPYSFRGLNYLKILNVSGNTLTTLEESAFHSVGNLETLALY
DNPLACDCRLLWVFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDVLQPNYFTCRKSRIR
DRKPQQKYVDEGAIVHFACQADGDPSPVIMWLSPQKKFITSKTIGRLSVLPDGTLEVRYA
QTQDNGTYACIASNAGGNDTSPAHLHIHSYSPDWPQRSNKTLAFISNQPAETGNGTRANA
PFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGATKHNIEIEYVPRKSDAGMSS
STADAPRKFNMKMI
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggcggccagggaagcgactgggcacagctacctggtggctttctggcagcccattctg
atactgatgcttggcgccgtgctgtctggctccactacaggctgtccatcccgctgtgag
tgcaatgttcaagagcgctctgtgatgtgccaccgcaaaaagctcatgacagttcccgag
ggcattcctgcagaaacaaaactgctggacctgagcaagaaccgcatcagaaccatcaac
ccagacgagtttgccattttccccaacctcgaaaacctggagctcagtgaaaacacgatc
tccaccattgaacctggagcattcaataacctttacggtctgcggacattagggctgcgt
agcaacaagctcaagctgatacagcttggggtattcacaggcctgagtaatctcacacag
ctggacataagtgagaacaagattgtcatcctgttggactacatgttccaggatttgtac
aacctgcggtccttagaggtgggtgataatgaccttgttttcatctcccaccgagctttt
cacgggcttagtagccttgagcacctgagtcttgagaagtgcaacctgtcctccgtacca
acagatgcttttacacaccttcacaatttgatcacgctcaggctgcgtctcctcaatatc
aatgtgatacgggattattccttcaaacggctctaccggctgaaagtgttggaaatagcc
aattggccttatctggatacgatgactccaaattgcttgtatggattaaatctcacctcc
ctgaccattgcaaatgccaacctgacaacaattccttatgttgccctgcggcacttggtc
tatttgcgctttcttaatatctcctataaccctatccataccattgaggggaataagctt
catgaccttctgcgtttgcaggaatttcacctggttggaggcagactggcaatgattgag
ccctactctttccgtggtctaaactacctgaagatcctaaatgtttctggaaacactcta
actactttagaggagtctgctttccattcagttggcaacctggaaacccttgccttgtat
gataaccccctggcctgtgactgcagactgttatgggttttccgacgacgctggagactg
aacttcaacaggcagcagcctacctgtgcctcccctgagtttgtccaaggcaaagaattc
aaagactttccagatgtcctgcagccaaactacttcacgtgtcgcaagtctaggattagg
gatcgcaaacctcagcagaaatatgttgacgaaggagccattgttcatttcgcttgccaa
gcagatggagatccttctccagtgataatgtggctatctccgcaaaagaagtttatcacc
tccaagacaattggaaggctttccgtgttgccagatggtaccctggaggttcgatatgcc
cagacccaagacaatggtacatatgcgtgtatagctagcaacgccggcggaaatgacacc
tcccctgctcaccttcacatccatagctactcgcctgactggccacaaaggtccaacaag
actttagccttcatctccaaccagcccgctgaaactggtaatggtacacgagccaatgcc
cctttcccctttgatattaagacgttgatcattgccactacaatgggcttcatctctttt
ctcggtgtcgtcttgttttgcctggtgctgctcttcctatggagtagaggtaaaggcgcc
acgaagcacaacatcgagatcgagtatgtgccacggaaatcggacgctggcatgagcagc
agcacagcggatgctcctcgcaagtttaacatgaaaatgatataa
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