Trematomus bernacchii (emerald rockcod): 117497934 Help Entry 117497934         CDS       T09643                                  Symbol col4a5 Name (RefSeq) collagen alpha-5(IV) chain   KO K06237   collagen type IV alpha Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben04382   Cornified envelope formation tben04510   Focal adhesion tben04512   ECM-receptor interaction tben04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:tben00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     117497934 (col4a5)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     117497934 (col4a5)   09142 Cell motility    04820 Cytoskeleton in muscle cells     117497934 (col4a5)  09150 Organismal Systems   09158 Development and regeneration    04382 Cornified envelope formation     117497934 (col4a5)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:tben04147]     117497934 (col4a5)    00536 Glycosaminoglycan binding proteins [BR:tben00536]     117497934 (col4a5) Exosome [BR:tben04147]  Exosomal proteins   Exosomal proteins of other cancer cells    117497934 (col4a5) Glycosaminoglycan binding proteins [BR:tben00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117497934 (col4a5) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  117497934 NCBI-ProteinID:  XP_034005856 LinkDB All DBs Position Unknown AA seq 1682 aa AA seqDB search MNKDLKSLSQLAVPLLLFALCVAVQRSESAACHGCVGSKCDCSGVKGTKGERGFPGLTGQ PGVPGFPGPEGPIGGRGEKGTDGSQGLYGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP RGIAGCNGTKGDRGFPGSGGILGQQGQPGVPGLPGIKGDPGDVISTNRFGEKGSVGLPGL PGVPGSSGPPGLQGPLGPQGNRGPDGRSGPPGSPGPKGNMGLNFQGPKGEKGEPGLAGPA GPPGQVGEQKGPPETEIQRGDKGDPGLQGLQGDPGYPGAPGPSGGQKGGKGEAGDAGKRG KNGKDGDPGGPGFPGGKGDSGQPGPPGRDGETGFKGDRGYPGPPGVVIGSPTGGQVGPKG VPGYPGSPGYKGERGPGGLSGPPGAPGISATGGGGVSGPPGFQGERGVKGDSGVPGVSLP GPPGRTGSNGGQGAPGLPGPPGFSTAQQNCVAGEPGRPGVQGERGFAGGTGQKGDKGETC VNCFGGTTGIQGSQGPAGQPGFPGTPGGPGVKGDRGYPGSPGSSGPAGPSGSQGTPGFPG QKGDSGDAVTVSGGRGEKGDSGFPGSPGLPGLDGRLGRDGQPGNPGAKGTPGSLLVKGER GPPGDSGPSGNPGDRGPGGAPGFGPQGSTGDKGVQGVSGRAGGPGASGTKGEPGLAIAEK GASGSPGQDGSSGSPGSPGNPGGPGQNGFPGLPGMKGDPGLPGIGLPGPPGVKGFPGIPG QNGPSAGPGRPGVDGLPGQPGFPGSKGEPGFGLPGPPGLPGGPGSKGFPGVKGDPGFSGG PGSPGRSGSDGGPGSKGDPGTPGIPGARGPPGSPTTGSLGQPGLPGPSGPMGSPGFPGSN GGKGDPGPPGLDIPGLPGERGGNGFPGSPGQVGTPGPLGGPGRDGQPGLPGQKGDMGSMG TPGPSGGPGGSGGPGGPGFKGEPGFSGRDGSPGGPGGKGDRGDPGVMGPPGASLPPSVTK GTKGEPGLSGGPGFSGQKGVPGLSGDPGLSGSDGRPGLPGPPGPKGDSGIPGGPGGSGGP GGKGSMGEMGFPGPSGQKGLSGQPGRSGGPGQPGGSGFPGSKGEPGSAGVGPPGPGGLKG DTGQPGFPGNSGLKGTPGSSGQPGGPGGPGSKGDPGLPGFQGSPGNPGPKGLDGGSGGPG LTGAPGRPGESGRSGGPGQSGDKGQAGRDGIPGPAGVKGDPGLPGYGGPGASGLPGLPGS KGDSGGSGPSGTPGFPGSKGDAGFPGNPGPSGNSGPSGSPGLALQGPKGLSGLPGPPGRA GQGGPQGPRGPPGSGGIKGDKGIPGALGQPGFGGQKGESGGSGFPGTSGLNGGSGSKGDI GLPGVPGFPGSKGDSGLPGGSGLNGDPGEAGGPGLPGEPGLSANPIMMKGERGPPGPSGL PGGQGTSGSPGREGLTGQPGGPGDSGPDGPPGFSGPNGRKGDTGPAGSPGTRGFPGPTGS DGPQGLPGPPGSGSAAHGFLITRHSQGQEVPFCPEGTSPIYDGYSLLYVQGNERAHGQDL GSAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPSSMAPITGEGIKPFISR CSVCEAPAMVIAVHSQTIQIPACPSNWEALWIGYSFMMHTSAGAEGSGQALASPGSCLEE FRSAPFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVSRCVVCMK RT NT seq 5049 nt NT seq  +upstreamnt  +downstreamnt atgaataaagacttgaagagcctgagccagctcgccgtgcctctgctgcttttcgccctg tgcgtcgcggtgcagcgatccgagtcagcggcttgccatggctgtgtgggatccaaatgt gactgcagtggagtaaaaggaaccaagggtgaacggggtttcccgggactcaccggacag ccaggggttccaggtttccccggacctgaggggccaatcggaggcagaggagagaagggt accgatggatctcaggggctttatggtccaaaaggaataagagggccatctggattgcca ggattcccaggaacgccaggacttcccggtctgcccggccaggatggacctccaggaccg agaggaattgcgggctgcaacgggacaaagggtgacaggggtttcccaggaagtggagga atcctcggtcagcagggacagccgggtgtacctggtctgccaggaataaagggcgaccca ggtgatgtgatctccaccaatcgttttggagagaaaggttcagtgggactgcccggacta ccaggagttcctggaagttctggaccccccggtttgcaaggcccactcggcccacaagga aacagaggtcctgatggtcgttcaggtcctcccggcagtcccggaccaaagggaaacatg ggattgaacttccaaggccccaaaggagagaagggtgaaccaggtctggcaggccctgct ggtcctccgggacaagtgggagaacagaagggacccccagagacggagatccagagagga gataagggagaccccggtcttcaaggtcttcaaggtgatccaggatatccaggagcccct ggtccctccggaggccagaaaggaggcaagggagaagcaggagatgcaggcaaacgaggc aaaaacggcaaagatggcgaccccggtggtccaggcttccccggaggtaaaggagactca ggccagccaggtcctccaggaagagatggagagacgggtttcaaaggtgatcgtggatac cctggcccaccaggcgtggtgatcggctcgccgacgggggggcaggtcggccctaaaggt gtgcccggctaccccggatcacctggatacaaaggagagagaggaccaggaggtttatcg ggccctccaggagcaccaggaatctcagctactgggggtggaggcgtctcaggacctcca ggcttccagggagagagaggtgtgaagggagattctggcgttcccggtgtttctctgcca ggacccccaggacgaacagggtccaacgggggtcagggagctccaggactccccggacct ccaggattctccacggctcaacagaactgcgtggccggagagcccggacgcccaggagtc cagggagagagagggttcgccggagggactggacagaaaggtgataagggcgagacgtgt gtgaactgctttggaggtaccactggcatccaaggatcccaaggacctgccggacagcca ggattccccggaactcccggaggtccaggagtcaaaggagaccgaggatacccaggatct ccaggctcctctggacccgctggtccctccggttctcagggtactccaggtttccccgga cagaagggagactccggagatgccgtcacggtgagcggtgggcggggagagaagggagac agcggattccccggatctcccggtcttcccggtttggacggtcgactcggtcgcgatgga caacccggaaacccaggagctaaaggaactccgggttccctgctggtgaaaggagaacga ggaccccctggagactcaggtccctctggtaaccctggagacagaggtcctggcggggcc ccgggctttggacctcaagggtctacaggagataaaggtgtccaaggagtctccggaaga gctggagggcccggtgcctccggtactaaaggtgaacccggtctagcgattgcagagaaa ggagcatcagggtcaccaggacaggacggctcttcaggatcgcccggatcaccaggtaac cccggtgggcccggacagaacggtttcccgggattaccgggaatgaagggagaccccgga cttcctggcatcggactcccaggaccgccaggagtaaaaggattcccaggtattcccggt cagaacggaccttcagcaggaccaggaagacccggagtggacggacttcctggccagcct ggattccctggatctaagggtgagcctggttttggtctccccggcccccccggtctccca ggaggccctggatctaaaggcttccccggagtaaagggagaccccggcttctctggaggc cccggctctcctggaagatctggatctgatggcggtcctggatctaaaggtgaccctgga acacctggaatacctggagctcgcggcccgcctggatcccccaccacgggctctctgggg cagcccggactccccggaccctccggaccaatgggatcaccaggattccccggatcaaac ggagggaagggagaccccggacctccaggtctggatatccccggtctgccaggagagaga ggaggtaacggtttcccaggatccccgggacaagtgggaaccccgggaccccttggaggg cccggacgtgacggccagcccggactgccaggtcagaaaggagacatgggctccatggga actccaggaccctcaggaggaccaggaggctccggaggacccggcggacccggatttaaa ggtgaaccaggattctcaggaagagacggatctcccggcggtcccggaggaaaaggagac agaggagaccccggcgttatgggacctccaggagctagtctgcccccatccgtcactaag ggaaccaaaggagaacctggactatcaggtggaccaggtttttccggtcagaaaggtgtc cccggtctgtcaggtgaccccggtctctcaggatcagacggtcgccctggactccccgga ccaccaggtccaaagggagattctggcatcccaggaggccccggtggttctggaggtcct ggaggaaagggcagcatgggagaaatgggattcccaggaccatcaggacagaagggtctg tcaggtcagccaggtagatctggaggtccaggacaacccggaggatctggtttccccgga tctaaaggtgaacccggatctgctggagtcggaccccccggacccggaggacttaagggt gacacaggtcagccaggcttcccaggaaattcaggacttaaaggaactccaggatcttca ggtcaaccaggaggaccaggaggaccaggatccaaaggagaccccggacttccaggattc caaggttctcccggtaatcccggtcctaagggtctggacggcggttccggtggtcccggt ctcactggagctccaggtagaccaggagagtctggaagatcaggaggtccaggacaatcc ggagacaagggtcaggcgggtcgggacgggatcccaggaccagctggagtcaaaggagac ccaggtcttccaggttacggtggacccggcgcttccggacttccaggattgcccggctca aagggagactccggtggttctggtccatctggcactcctggttttcccggatctaaggga gatgctggttttcccggaaaccctggtccctcaggcaacagtggcccttcagggtctcca ggtctagctctgcagggccccaaaggactctcaggactccctggaccccccggaagagca ggtcaaggtgggccccagggtcctcgtggtcccccaggaagtggcggcattaagggagat aagggtattcccggcgctcttggtcagccaggctttggaggacagaagggagagagtggt ggttccggattcccaggtacatctggtcttaacggcggctctggttcgaagggagatatc ggtcttcccggcgttcctggtttccctggatcaaagggagattctggacttcctggcggc agcggccttaacggagatcctggagaggccggaggccccggccttcctggtgaacccggt ctttctgcgaatcccatcatgatgaagggagagcgcggaccccccggaccctcaggcctg cctggaggtcaaggaacttctggttctcctgggcgtgagggacttacaggtcagcctggt ggccccggagattctggtcctgatgggcctcctggcttcagcggacccaacggcaggaag ggagacacgggccccgccggcagccccggcacgcgtggtttccccggccccactggttct gacggtcctcagggtctccccggtcctccaggatcagggtctgcagcccacggcttcctg atcactcgtcacagtcagggacaggaagtgcccttctgccccgagggaaccagccccatc tacgacggatactctctgctctacgtgcagggcaacgagcgcgcgcacggacaggacctc ggttcggccggcagttgtctgcgccgcttcagcaccatgcccttcatgttctgcaacatc aacaacgtttgtaacttcgcctcccgcaacgactactcctattggctgtccacacccgaa cccatgcccagctccatggcccccatcaccggggaggggatcaagcctttcatcagcagg tgttcggtttgtgaagctccagccatggtgatcgcagtgcacagtcaaaccatccagatc cccgcctgcccctccaactgggaggctctgtggatcggatactccttcatgatgcacacc agtgcaggtgcagagggttcgggtcaggctctggcctcccccggctcctgtctggaagag tttcgcagcgctcccttcatcgagtgccacggcagaggaacatgcaactactacgggaac tcctacagcttctggctggccacggtggaaccctccgagatgttcaggaagccccagtct gagactctgaaggcgggtaacctgcggactcgtgtgagccgctgcgtggtctgcatgaag aggacgtaa

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