Trematomus bernacchii (emerald rockcod): 117498343
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Entry
117498343 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: phthiocerol synthesis polyketide synthase type I PpsD-like
Organism
tben
Trematomus bernacchii (emerald rockcod)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ketoacyl-synt
KR
Acyl_transf_1
Ketoacyl-synt_C
PS-DH
KAsynt_C_assoc
PP-binding
adh_short
PKS_DH_N
CurL-like_PKS_C
ACP_SdgA_C
adh_short_C2
Thiolase_N
ADH_N
Motif
Other DBs
NCBI-GeneID:
117498343
NCBI-ProteinID:
XP_034006271
LinkDB
All DBs
Position
Unknown
AA seq
2102 aa
AA seq
DB search
MEEAEDAIALVGIGCNFPGGEGLDNFWKVLVEGRNCSVPIPKERFDISSWYDPDDNKAGK
SRTAKAALINGFNEFDHRFFGISDSEVEQMDPQQKQLLQCVYRALENAGIPMEKASGTRT
GVYFGIMNRDYETNAAHVHPSVINHWTGTGLAMSIAANRVSYIFNFTGPSLSLDCACSSS
LVALHLACQSIKQGDCEMAVCGGVNCIIEPRVFVALSKAKMISPEGTSKPFSNKADGYGR
GEGCGVVLLKPLKKAIQDHDHIWGIISKTAVNQDGHSVSPITKPSMTQQEELLRRIYSES
DLVNVQYIEAHGTGTPVGDPTEAGSISNVIAKAKPPGSEILRIGSVKSNIGHTESAAGVA
GLIKVLLMMKHETICPSVFYSEETASVDAKALNIKVPKESEKWEALGPRIAGVNNFGFGG
TNAHAIVKQHKQSHIEQRNGGKQKKYFVMSANSPKSLTLMTEDTIKQLDADSELDVDSLL
YTSACRRSHLKHKYRKAIIVSSKVELKEKLSATLSKNVRPSLSDPRLVFVFCGNGVTYHG
MCKQLLKHEPVFRGKIKEIGKLFQRLSKTNILDTLESEIEGSDFNKPHVIQPLLFAIQVG
ITTLLRYWGVKPDAILGHSVGEVAAAHCSGLLSLEDAVKVIYFRSTLQNRVTGGKMLVIS
NMAISEVTALLPCYSGKVCLAAFNSSQSCTLSGDADAIESIHKELSTSANSQNLFLRVLD
VPAAYHSHMMDPILQKIEETIGSLKVNDLDTELFSTVTGKEVQHGDFCKGEYWARNIREP
VAFEQAVNSATKGKKNVVFVEIGPRRALQRNIMESLGNDTSVLASVQPEKDHETLLSVVS
NLFELGVQVNWDTFYRGYETMPLPIPKYQFDCSDRDVIIGAAQKNTVSNHPVLCQTGSES
NIFSCDLMSESSFYLKEHKHNNIPIIPGSFYAELGLAAFMASAKPKVPLCSLQVSVNFHS
PFVLSQNSSEMKVQLEKREEDTKFMVLSPSAMYASGTVVSKKERLIEEQCISLSSIYKRC
KSVVSSKEFYGYLSRGGFQYGDIFKNKWDVHYGEDLKEAFAKVTVPEELRSQLHDYYIHP
VVLDFLMQLLPVTVEHIFTGRPGFPAKIGSLTVFEPLQDEMVVYLRAIDVGKDHFEICGC
FADKQGKVLVEVKHVIIKYLGSRSHVVEEYFYHNAFSVIPEGVTSASPPKALVFADSKGI
SKGLQQYLDLKSIYVPFKHAKDILSNGFPTLLANLNITDIENNFDEVLFLWGKEDLTSLS
ADVVLQNLASCLETFRQIVLKLKQIRFPNSIRAVTYCSSDITVDHISPGFALAGMTRSIA
AEIPDLSFQLIDISGTSAKDIAALSEVLRLHPCSKYPELVVKDGQILKPSIVRTPPEIMD
SSVGRFTSTMSEPCILQTDEAHNMTHLSAIHCKGDPEAVRDRSVEIRPSKICAHSPDYFP
VSASHLNFGQTLYWNKHSSQKHKLLALDFSGTITAVGKDVRKLKVGDQVASCYPVVAASK
VRVPEDVCYSIKQFPFLQKTPCVSYFVLAWEILHRALSRAKHNLGIISSVPDSALMKVLA
LTAYKSGWNVIVGTQCNGSFVNVNQMDVFVILPPFDESLIANICNFPGIQHVVLICESQM
QCLLAQDVIQSVKDSVHVQTIQMPVILQKGSLSAQRPYIYHWLKSLNLNRKCSLDSYTYQ
NVQSESIEILKSETPQSYFNSKKLAVVVLEKDGSSTPSDIPLLPTKKQLFRKRAVYIVAG
GLSGLGFETVKFISQRGGEYVVILSRSKPTPDVEQEIHNVEKQCGNCITSMECDISVSEC
VHKVINAIGKTFSGCPIKGVFHSAVVLDDGLIESLNRSLYEKVLKPKVNGALNLHHATKH
CQLDYFVCYSSISAFLGNASQTNYAAANTFLDMFCQYRRKIGLPGQSINWGALNLGLLLN
KEHFQRFLEAKGMMVLDVAEIHKSLEQCLVLNLPQQAVCRFHFRNIRFNILSQNAALTMR
LSALVEEAFQKSKETDSQTKQTQTVSPKDYVVSLICETIGMDKSELKDESPLSSLGIDSM
QAMTLQNLIFQERGVNVPLVKLLDPNATLSTLVSLLSEGKGEGEGEGDNLEPIPVRRIST
RL
NT seq
6309 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagctgaagacgctattgccttggtaggcattggatgcaattttccaggggga
gaagggcttgacaatttctggaaggttctggtggaggggagaaactgttctgtgccaatt
cccaaagagagatttgacatatccagctggtatgaccctgatgacaacaaggcgggtaaa
tcccgcacagccaaggctgcacttatcaatgggttcaatgaatttgaccacagattcttt
ggcatcagtgacagtgaagtggaacagatggaccctcaacaaaaacagctccttcagtgt
gtctacagggcattggaaaatgccggaatccctatggagaaggccagtgggaccaggact
ggagtgtatttcggcatcatgaacagagattatgagacaaatgctgcacacgtgcaccca
agtgtgatcaaccactggactggcacaggccttgccatgagtattgctgcaaacagagtg
tcctacatcttcaacttcactgggccctcactgtctctggactgtgcctgctcatcatct
cttgtggctcttcatcttgcctgtcaatccattaaacaaggcgattgtgaaatggctgtt
tgtgggggagtcaactgtattatagagccaagagtgtttgttgctctcagcaaggccaag
atgatctcacctgaagggaccagcaaacccttctccaacaaagcagatggttatggtaga
ggggagggctgcggagttgttctgctgaagccgctgaaaaaggctatacaagaccatgac
catatctggggtatcatcagcaaaacagccgttaaccaagatggacactcagtttcccca
atcaccaaaccatccatgacacaacaagaggaactcctgcgcagaatctactcagagtct
gaccttgtgaatgtccagtacatagaggcacatgggacaggaaccccagttggagatcca
acagaggcaggaagcatctcaaatgtcattgctaaagccaaacctcctggttcagagata
ctgcggattggctctgtgaagagcaacattggacatacagaatctgcagcgggagtggcc
ggactcattaaggttctcctcatgatgaagcatgaaacaatttgcccctcagttttctat
tctgaggagaccgccagtgtagatgctaaagccctgaacattaaagttcctaaggaatca
gaaaaatgggaagccttaggtccaagaattgcaggagttaataactttggctttgggggt
accaatgcacacgccattgtcaaacagcacaagcaatcacacattgagcagagaaatggt
gggaaacagaaaaagtattttgtcatgtcggcaaattcaccaaaatctcttactctgatg
acagaagacaccattaaacagctagatgcagatagtgaacttgatgtagattcgctgttg
tacacatcagcttgcagaaggagccatctaaaacataaatacagaaaggccatcattgtt
tcatccaaagttgagcttaaggaaaagttaagtgccactttaagcaaaaatgttcgccct
tccctttcagatccaaggctagtgtttgtgttttgcggaaatggtgtcacttaccatggc
atgtgcaaacagctacttaaacatgagcctgtgttcaggggtaagatcaaagagattgga
aaactcttccaaagactgagtaaaactaacattttggacacacttgagagtgagattgag
ggtagtgacttcaacaagccacatgttatccaaccactcctctttgctatccaagttggc
attactaccctactcaggtactggggtgtcaagcccgatgcaatacttggacactcggtt
ggcgaggttgcagctgctcactgttctggcctcttgtctcttgaggatgcagtaaaagtc
atctattttcgcagcactctccagaacagagtcactgggggaaagatgcttgtgatcagc
aacatggctatatcagaggtaactgctcttctcccttgttactctggtaaagtttgcctg
gctgctttcaacagttcgcagtcctgcaccctctcaggtgatgcagatgcaattgagagc
atccataaagagctaagcacctcagctaacagtcagaatctgttcctccgtgttttggac
gttcctgctgcttaccacagccacatgatggacccgattctgcaaaaaatcgaggagaca
attggctcgttaaaggtcaatgatctcgacacagagttgttctcaacagtgactggcaag
gaagtccagcatggggatttctgcaaaggggagtactgggcgaggaacatccgtgagcca
gtagcttttgagcaggcagtgaactcagcaaccaaaggcaagaagaatgtagtgtttgta
gagatagggccaagaagggcactacagagaaacatcatggaatctctggggaatgacaca
tctgtccttgcctctgtgcagccagaaaaagatcatgagacattactgtctgttgtttct
aatctgtttgaactaggtgttcaagtaaattgggacaccttctacagaggatatgagacg
atgccactgcctattccaaaataccagtttgattgttcggacagggatgttatcattgga
gcagcacagaaaaacacagtgagcaatcaccctgtgctctgtcagacagggagtgaaagt
aacattttcagttgtgatctgatgtctgagtcttctttctacctgaaagagcacaagcac
aacaacatacccataattcctgggtccttctatgctgagttgggtttagccgcattcatg
gccagtgccaaaccaaaagtaccgctctgctcactacaggtcagtgtcaatttccacagt
cctttcgttttaagccagaattcatcggaaatgaaggtgcaactagaaaaaagagaggaa
gacactaagttcatggttctctctccatcagcaatgtatgcatcaggcacagtggtttca
aagaaagagaggctgattgaggaacagtgcatttcattaagctccatctacaaaagatgc
aaatcagtagtgagctctaaggagttttatgggtatctctctcgaggaggctttcagtat
ggagacatcttcaagaataagtgggatgtgcactatggagaagatctcaaggaggctttt
gcaaaagtcactgttccagaagaactgcggtctcagttgcatgactactacatccatcct
gttgttttggattttctgatgcagcttctcccagttacagtggagcacatttttactggt
agaccaggatttcctgccaaaataggaagtttgacagtgttcgaacctttgcaagatgag
atggttgtctatctgagagcaattgatgtgggcaaagatcattttgagatatgtggctgc
tttgcagataaacaagggaaagtgttggttgaggtgaagcacgtgataatcaagtacctt
ggtagtcgctctcatgtggttgaggagtatttctaccataatgcctttagtgtcatccct
gaaggtgtcacatctgcttctcctcctaaggcattggtctttgctgacagtaaagggatc
tcaaaaggcctgcaacaatatttggacttgaagtctatatacgttcccttcaaacatgca
aaagacatcttgagcaatgggtttcctacactcctggcaaatcttaatattaccgacatt
gagaacaacttcgatgaggtcttatttttgtggggcaaagaagacctgacttcactgtca
gctgatgttgtcttgcagaatttggcgagctgcttggagactttccgccaaatagtcctt
aagctaaagcaaattcgctttccaaactccatcagagcagtcacctactgttcatctgat
atcacagtggaccacataagtccaggttttgccctcgctggtatgaccagatcaattgct
gcagagataccagatctttcctttcagctgattgatatcagcggcacctctgccaaggac
attgcagctctatctgaggtcctaagattgcatccttgcagcaagtacccagagttggtt
gtaaaagatgggcagattctgaaaccttctattgtccgcactccacctgaaatcatggac
agttcagtgggcaggtttacttctacaatgtcagagccctgcatccttcagacagatgag
gcacataacatgacccacttgagtgccattcactgtaagggggaccccgaggcagttagg
gacagatcagttgaaattcggccaagtaagatatgtgctcattcaccagattacttccct
gtcagtgcatcacatctgaattttggccagacgctgtactggaataaacactcatcacag
aaacacaagctactggcgcttgatttcagtggtactattacagcagtcggaaaagatgtc
aggaaattgaaagtgggagaccaggttgcttcctgttatcctgtggtagcagccagcaag
gtcagagttccagaggatgtgtgctacagcatcaagcagttcccatttcttcaaaagaca
ccttgtgtttcctactttgtgctagcatgggagatccttcatcgagccttgtcaagagcc
aaacataatctgggaatcatatcctctgtgcctgattctgctctgatgaaagtcttggca
ctcactgcttacaagtcaggctggaacgtgattgttggcacacagtgcaatggctctttt
gtaaatgtcaatcaaatggatgtttttgtcatcctgcctccgtttgatgaatcactgatt
gctaatatatgcaactttccaggtatacaacatgttgtcttgatctgtgaatcccagatg
cagtgtttgcttgctcaggatgtgatccaaagtgttaaggacagtgttcatgttcagaca
attcagatgcctgtcattttgcaaaagggatccttgagtgcacaaaggccttacatctat
cattggttaaaatccttgaacttgaacaggaaatgttcccttgatagctatacttatcag
aatgtccaatctgaaagcattgagatccttaagtcagagacaccacaatcatacttcaac
tcaaagaaactggctgttgtggttttggaaaaagatggcagcagtacgccgtctgacatt
cccttgctgccaacaaaaaaacagcttttccgaaagagggcagtgtacatagttgcaggt
ggtctttctggtctggggtttgaaaccgtcaagttcatttcacaaagagggggtgagtat
gttgtcatactctctaggagcaagcccacaccagatgtggagcaagagatacacaatgtg
gagaaacagtgtggaaactgcatcacttccatggagtgtgacatatctgtgtctgagtgt
gtgcacaaggttatcaacgccataggcaagacattctctggttgtccaatcaaaggagtg
tttcacagtgcagttgtcttggatgatgggctgattgagtccctcaacagatctctttat
gagaaagtactgaaacccaaagtcaatggtgcactgaatttgcatcatgcaacaaagcac
tgtcaactggattactttgtgtgttactcctccatctcagcttttctgggaaacgcatca
caaacaaactatgcagcagccaacacattcctcgacatgttctgtcaataccggcgcaaa
atcgggctgcctgggcagtccataaactggggagccctaaaccttggcctcctcttgaac
aaggaacatttccagcggtttcttgaggcaaaggggatgatggtgttggatgtggctgag
attcataaaagtctggagcaatgccttgtgctcaatttaccccaacaggcggtttgcagg
tttcacttcagaaacatcaggttcaacatcctctcacaaaatgcggccttgaccatgcgc
ctgtctgcattggtagaggaggctttccaaaaatccaaagagacagattctcaaaccaaa
caaactcaaacagtgtcaccaaaagattatgttgtgtctctgatttgtgagaccatcggc
atggataaaagtgagctgaaagatgaatcacctctttcatctttaggcattgactccatg
caggccatgactctgcagaatctcatctttcaggagagaggtgtgaatgtgcctttggtg
aaactgttggatccaaatgctactctctcaacgttagtttctctactgagtgaaggtaaa
ggtgaaggtgaaggtgaaggtgataacttggagcctattcccgttagacgcattagtaca
agattgtaa
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integrated database retrieval system
