Trematomus bernacchii (emerald rockcod): 117498352
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Entry
117498352 CDS
T09643
Symbol
hnrnpub
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein Ub
KO
K12888
heterogeneous nuclear ribonucleoprotein U
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117498352 (hnrnpub)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117498352 (hnrnpub)
Spliceosome [BR:
tben03041
]
Common components
Common spliceosomal components
hnRNP proteins
117498352 (hnrnpub)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_33
SPRY
SAP
AAA_17
CPT
Zeta_toxin
AAA_22
AAA_18
Motif
Other DBs
NCBI-GeneID:
117498352
NCBI-ProteinID:
XP_034006280
LinkDB
All DBs
Position
Unknown
AA seq
816 aa
AA seq
DB search
MSSINVKKLKVNELKDELKKRDLSDKGLKADLMDRLQVALDEEALGGDSPLDPEAVAVEG
SGQAADHEGMGEEEEGEGPIEESMEANEDEEEEEEEEPENGGNDDAVAEDEEMGEGEGEE
DEDDEMDPMLKGDVDDMEKIDTEDGEPADQTAEGDADKDTNADQKNKKGVKRRREEHGRG
YFEFIEENKYSWASFKSPVPPLEEEDEEFDDTKVCLDTYNCDLHFKVSRDRYSASSLTME
SFAYLWSGGKATYGMNKGKACFEIKIAEKIPVKHISSKNMEIHDVQVGWSLSTGTLLLGE
EEHSYAYSGKAKKTTNCVTEDFGETYEENDVICCLIDFEGDEVVLSCSKNGGEPAVAFQV
NKDSLSGQALFPHVICHNCAVEFNFGQMETPYFPQPQGYTFLQQIPVDDRVRGLKGPQTK
ADCEIIVMVGLPGSGKTTWVKNHVQENPGKYYILGSDTIVDKMMINSLKRQSKDITKLSA
ISQRAPLFLGKFIEIAARKKRNYILDHTNLSAPGQKRKMCLFAGFQRKAVVVCPSDEDYK
ERVQKKVESDGKEVPEHALFKMKGFYSLPGEGESFNDVVFAELQKEEAGKLLEQYKEESK
TALPAEKKPNQGSTTPKRGGGLRGGGRGGGGKNQFGRGSGPGPRGGSRGGFQNRGNFRGA
PGPRGGFNRPPRGFLPPPAFRGGFHNRGNFNRGGGPIPSLGGSPRGGPMRNMGPRGGPMN
RGGPMNRGNMSRGGGANMHRGGARGHHNQQFQPRGGNRGNYGNFGNKNGNFGGNRNGGNF
GGNRNGMDKAQAFNQSWQQGFWNQKPWSQQYQPGYY
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgagctcaattaacgtaaaaaagctgaaagtaaacgagctgaaggacgagctgaaaaag
cgtgatctttccgacaagggtctgaaggccgacctaatggaccgcctgcaggtcgcgctg
gacgaggaggccctcggcggagattccccgctggacccagaagctgtggcggtcgagggt
tccggccaggccgccgaccatgagggcatgggagaggaagaagaaggtgagggcccgata
gaagaaagcatggaggccaacgaggatgaggaggaggaggaagaagaagaaccggaaaat
ggaggcaacgatgatgccgttgccgaggacgaagagatgggtgaaggggaaggggaagag
gacgaagacgacgagatggatcccatgctcaagggtgatgtcgacgacatggagaaaata
gacacagaggatggtgagcccgcggaccagactgcagagggggatgcggacaaagacacg
aatgctgatcagaagaataagaagggtgttaagagacgccgggaggaacatggaaggggc
tactttgaatttattgaagagaacaaatacagctgggcctcattcaagtctcccgtgcca
ccccttgaggaggaagatgaggagtttgatgacaccaaagtctgtctggatacctataac
tgcgacctgcactttaaggtgtcgcgggaccgttacagcgcctcatcactcaccatggag
agttttgcttacctctggtccggaggcaaggccacctacggcatgaacaaaggcaaagcc
tgctttgagattaagattgcagagaaaatccctgtgaagcacatctccagcaagaacatg
gagattcatgatgtccaggtcggctggtccctgtctactggcaccctacttcttggcgag
gaggaacattcttatgcatactctgggaaagccaagaagaccaccaactgtgtgaccgag
gactttggagaaacctacgaggagaatgacgtcatctgctgcctcattgactttgaggga
gacgaggtggtgctgtcctgttctaagaatggcggggagccagctgttgctttccaggtc
aacaaggactctctgagcggccaggccctcttcccacacgtcatctgccataactgtgct
gtggagttcaacttcggccagatggagactccgtacttcccccagccccagggctacacc
ttcctgcagcagatcccagtggacgaccgtgtccgggggctcaagggcccacagaccaaa
gctgactgcgagatcatagtgatggtcggcctgccaggctcagggaagaccacatgggtg
aagaaccacgtccaggagaaccctgggaaatactacatcttgggcagtgacactattgtg
gacaagatgatgatcaacagtctgaaacgccagtcaaaggacatcacaaagctgagcgcc
atttcccagagagcaccacttttcctgggaaagtttattgagattgctgcccgcaagaag
agaaactacatcctggatcatactaacctgtctgccccgggccagaagaggaagatgtgc
ttgtttgcgggcttccagcgcaaggctgtggtggtctgcccttctgatgaggactacaag
gagagggtccagaagaaggtggagagcgacggcaaagaagtgcccgagcacgccctcttt
aaaatgaaaggcttctactcgctgccgggggagggagagagcttcaatgacgtggtcttc
gccgagctgcagaaggaggaggccggcaagctgctggagcagtacaaggaagagagcaag
actgccctgcccgctgaaaagaaacccaaccagggaagcacaacaccaaaaagggggggt
ggtctgcgtggaggcggacgcgggggcgggggcaagaaccagtttggccgtggaagtgga
cctggaccgagaggcggcagccgcggaggcttccagaacagaggcaacttcagaggagct
cccggccctcgtggaggcttcaaccgcccaccccgcggcttcctgcctccccccgccttc
agaggaggcttccataaccgtggaaacttcaacaggggtggcggccctattcctagtctg
ggcggatcccctcgtggcggaccaatgagaaacatgggacctagaggcggacccatgaac
agaggtggcccaatgaacagaggcaacatgagcagagggggtggagccaacatgcaccgt
ggaggggcccggggccaccacaaccagcagttccagccgagaggtggtaaccgcggcaac
tacggcaactttggaaacaagaatggcaactttggtggcaacaggaacggcggcaacttt
ggtggcaacaggaacggcatggacaaggcccaggccttcaaccagagctggcagcaaggg
ttctggaaccagaagccctggagccagcagtaccagcctggatattactaa
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