Trematomus bernacchii (emerald rockcod): 117498577
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Entry
117498577 CDS
T09643
Symbol
prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117498577 (prpf39)
Spliceosome [BR:
tben03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117498577 (prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
TPR_19
TPR_MalT
TPR_10
Focal_AT
DSHCT
Motif
Other DBs
NCBI-GeneID:
117498577
NCBI-ProteinID:
XP_034006658
LinkDB
All DBs
Position
Unknown
AA seq
799 aa
AA seq
DB search
MEDTGLQLSDNTFIGMLDTESPVMESNGDAFLPDLPVLGQTADWSPDQVTPDPLANILPE
DSDESQDAPEQHQQPNEQMDSTELGSVEKAVEQFQIASAQLFQDEQPPPPPPPPPPPQPE
EESEQPSFHKADSGESDQDSQEMTVMPEASTQDSSQEASEAPQVTEEGMELEEPKEATQE
PAVPAEPEPEPPSEFEKLFKACEESPEDFNGWVYLLQYVEQENALPAVRKSFDIFFLRYP
YCYGYWKKYADIEKKHENIQVAEEVYRRGLQAIPLSVDLWLHYLTFIKENSDLSDPETEG
RIRAAYEHAVLAAGTDFHSDRLWESYITWETEQEKLANVTAVYDRILGIPTQLYSQHLQR
FKDHVQNNNPKHFLSEEEFIQMRLELSKASLSAMICESEDKPSAQDDLPPGTEDLADPAQ
RVTEIENMRHKVNEVRQEVFNHNEHEVSKRWAFEEAIKRPYFHVKSLEKNQLNNWKEYLD
FEIENGTPERVVVLFERCLIACALYEEFWTKYAKYLEGYSTDGVRHVYKKACTIHLPKKP
AIHLLWAAFEEQQGNVEEARDILKSLEALVSGLAMVRLRRVSLERRHGNLEEAEAMLREA
MESAKNATETSFYAVKLARQMMKVQRSLSKARKVLLDAIEKDQTSPKLYLNLLELEYSGD
VTQNEAEILACFDRALQSQMPLESRLLFCQRKVEFLEDFGTDVNVLGAAYEELQKLQKES
EPAKRKAENGYDSAQEPDSKRQRVEDGSTGAATAATDPAANNTAYNNWYQQQYGGWGQNS
WGQYNQYAQYNQYYPPPPT
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggaagatactggcctgcaactctcagacaacacttttattggaatgctggacactgag
tcccctgtcatggagagcaatggggatgcatttcttcctgaccttccggttctaggccaa
actgcagactggtccccagaccaggttactcctgacccacttgccaacatcttacctgaa
gactcagatgagtcccaggacgctcccgagcagcaccagcaaccaaatgagcagatggat
tccacagagctgggatctgtggagaaagctgtggagcagtttcagattgccagtgctcag
cttttccaagatgagcaaccaccaccaccgcctccacctccacctcctccccagccagaa
gaagagtcggagcagccatcattccacaaagcagactctggagagtctgatcaagacagc
caggagatgaccgttatgccagaagcttctactcaggatagcagtcaagaggcgagcgag
gcaccacaggtgacagaggagggcatggagcttgaagaacccaaagaagccacacaagaa
ccggctgttcctgccgagcctgagccagaaccgcctagtgagtttgaaaaactctttaaa
gcatgtgaggagagcccagaggacttcaatggttgggtctacctgctgcagtatgtggag
caagagaatgctcttccagctgtgagaaagtcatttgacatattcttcctacgctatccc
tactgttatggctactggaagaagtatgctgatattgaaaagaagcacgagaatatacag
gttgcagaagaggtatacagaagaggcttgcaggccatccctctcagtgtggatctgtgg
ctgcattacctgaccttcatcaaagagaactctgacctgagtgacccagagacagaggga
cgcattcgagctgcttatgagcatgcagtgcttgctgccggcacagacttccactcggac
cgcctgtgggagtcctacatcacctgggagacggagcaggagaaactggctaacgtcact
gccgtctatgacagaatcctgggcatcccaacacagctgtattcccagcacctccagagg
tttaaagatcacgtacaaaacaacaaccccaagcacttcttgtcagaagaggagttcatt
cagatgaggctcgagctctccaaagccagcctgtcggcgatgatctgcgagagcgaggac
aagccttctgctcaggatgacctaccacccggtaccgaggaccttgcggaccctgctcag
agagtgacggagatcgagaacatgcgccacaaggtgaacgaggttcggcaggaagtgttc
aaccacaacgaacatgaagtcagcaagcgctgggcttttgaggaagcgattaagagaccc
tacttccacgtcaaatccttagagaagaaccagctgaacaactggaaggagtacctggac
tttgaaattgagaacgggactccggagcgcgtggtcgttctttttgaacgatgcctcatc
gcctgcgcactctacgaggagttctggaccaagtatgcaaaatatctagagggctacagc
actgatggtgtgagacatgtctacaagaaagcgtgtaccatccatttgcccaagaagcca
gcgattcacctgctgtgggctgccttcgaggagcagcaaggtaatgtagaggaggctcgt
gacatcctgaagtccctggaggcattagtctccggtctggccatggtgcgtctgaggagg
gtcagtctggagcggcgccacggtaacttggaggaagcggaagccatgttgagggaggcc
atggagtctgcgaagaatgctacggagacatcgttctacgctgtgaagctggcccggcag
atgatgaaggtgcagagaagtctgagcaaagccaggaaggtgctgctggatgctatcgaa
aaagaccagacaagtccaaagctctatctgaacctgcttgagctggaatacagtggagac
gtgacacagaatgaggctgagatcttggcctgtttcgaccgggccctgcagagccagatg
cctctggagtcccgcctcctcttctgtcagcgcaaggttgagttcctcgaggactttggc
actgacgtcaatgtgcttggcgctgcgtatgaggaacttcaaaaactacagaaagaaagc
gaacccgcgaagaggaaagccgagaacgggtatgacagcgctcaggagcctgactctaag
aggcagcgggtggaggacggttcaacgggtgcggcaacagcagcgacggacccagcggca
aacaacactgcatacaacaactggtaccagcaacagtacggtggttggggacaaaactcc
tggggacagtacaaccaatatgcccagtataaccagtactacccccctcccccaacataa
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