Trematomus bernacchii (emerald rockcod): 117498881
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Entry
117498881 CDS
T09643
Name
(RefSeq) E3 ubiquitin-protein ligase Midline-1-like
KO
K08285
midline 1 [EC:
2.3.2.27
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117498881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tben04121
]
117498881
Enzymes [BR:
tben01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117498881
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117498881
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COS
SPRY
ANCHR-like_BBOX
zf-B_box
fn3
zf-RING_UBOX
RING_XB3-XBAT31
zf-C3HC4_4
zf-C3HC4
PRY
FN3_DSCAM-DSCAML_C
TRIM_CC
zf-C3HC4_3
zf-RING_2
Pur_ac_phosph_N
zf-RING_5
zf-C3HC4_2
NDNF
Motif
Other DBs
NCBI-GeneID:
117498881
NCBI-ProteinID:
XP_034006931
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MDTLESELTCPICLELFEDPLLLPCAHSLCFGCAHRILISHCATNESVLSIGAFQCPTCR
YVISLSPERGLEGLKRNVTLQNIIDRVQRASSSAGIPLPLALPAPHSGPNSPGEEGRDRL
ALVPFSAAMSSPGTPPEPIQCQFCEQDPPQDAVKTCVTCEVSYCEECLRATHPNKKPFTG
HRLIEPMPDSHLRGLQCLEHDEEKVNMYCVTDDQLICSLCKLVGRHRDHQVAALSDRYEK
LKQALDSNLSNLIKRNNELESIMGKLIQTCQHVEVNATRQEGKLLEECDVLIEIIQQRRQ
IIGSKIKEGKTQRIRKLAQQISNCKQCIERSSALITQADQTLKETDHARFLQTAKCINER
VSMASASTQVLIPEINLTDTFDTVALDFTREKKLLENLDYLTAPNAPCIREELCTASYDT
ISVHWTSDDEFTVVSYELQYAIFTGQSNIASLCNSLESWMIVPNIKQNHYTVHGLQSGTK
YIFVVKAINQAGSRSSEPGTLKTNSQPFKLDPKSAHKKLKVSHDNLTVERDETTSKKGHS
QERFTSQNSYGVVGNVYIDSGRHYWEALIGGSTWYAVGIAYKSAPKHEWIGKNSASWVLC
RCNNSWVVRHNSKELAIEPSPHLRRVGILLDYDAGSVSFYDAVGSQHLHTFHVSFVQPVC
PVFNVWNKCLTILSGLPIPDHLEGLELDN
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggacacactggagtcagagctgacttgcccaatctgcctggagctctttgaagaccca
ctgctgctgccctgcgctcacagcctgtgtttcggctgcgcccatcgcatcctcatctct
cactgtgccaccaacgaatcagttctgagcatcggcgccttccagtgccccacctgtaga
tatgtcatctccttgagtcctgagcgtggactagaaggactaaagagaaacgtgaccttg
cagaacattattgatagagtacagagggcctcatcctcggctgggatccctcttccgctg
gcgttgcctgcgccccacagcgggcccaactctcccggagaggaagggagagaccggttg
gcgttggtcccgttcagtgccgccatgtccagcccgggcacgcctcctgagcccatccag
tgccagttctgtgagcaggacccgccacaggatgccgtgaaaacgtgtgtgacgtgcgag
gtgtcgtactgcgaggagtgcctccgagcaacgcacccgaacaagaagccgttcaccggc
caccggctcatcgagcccatgccagactcccacctcagggggctgcagtgcctggagcac
gacgaggagaaggtgaacatgtactgtgtcacggacgatcagctgatctgctcgctgtgc
aaactggtgggaaggcaccgagaccaccaggtggcagcgctgagcgaccgctatgaaaaa
ctcaagcaagccctggactccaacctgagcaatttgatcaagaggaacaatgagctggag
tctatcatggggaaactgatccagacttgtcaacatgtagaggtgaacgcgacccgtcag
gagggcaagctcctggaggagtgtgatgtcctgatcgaaattatccagcagaggaggcag
atcatcgggagcaagatcaaggaggggaagacacaaaggattcggaagctcgcccaacag
atctccaactgcaagcagtgcatcgagaggtcctcggccctcatcacgcaggccgatcag
acgctgaaagaaactgatcacgcgcgcttcctgcagaccgccaagtgcatcaacgagagg
gtttcaatggcatcagcatcaactcaagtgctgatccctgagataaacctaacggacacc
ttcgacacggtcgccctggacttcaccagagagaagaagctgctggaaaatctggattac
cttactgctccgaatgctccgtgcatacgggaagagttgtgcacggcgtcctacgacact
atctctgtccactggacgtctgatgatgagttcacggtggtatcctatgagctgcagtat
gctatctttactggacagtctaacattgccagtctgtgtaactctttggagagctggatg
attgttcccaacatcaagcagaaccactacacggtgcacggtctgcagagcggcaccaag
tatatcttcgttgtcaaggccattaaccaagcaggaagcaggagcagcgagccggggact
ctgaagaccaacagccagcccttcaagctggaccccaaatcggcccacaagaagctgaag
gtgtcccacgacaacctgacggtggagcgcgacgaaaccacgtccaagaagggccacagc
caggagcgcttcaccagccagaacagctacggcgtggtggggaacgtctacatcgacagc
ggccgccactactgggaggctttgatcggagggagcacatggtacgctgtgggtattgcc
tacaaatcagctccaaagcacgagtggatcggcaagaactcggcctcctgggtgctctgc
cgctgcaacaactcctgggtggttcgccacaacagcaaggagctggccatcgagccctcg
ccccacctgcggcgcgtcgggatcctgttggactacgacgccggctccgtgagcttctac
gacgccgtgggctcccagcacctgcacacattccacgtgtccttcgtgcagcccgtgtgc
cccgtgttcaacgtgtggaataagtgtctgacgattctgtccggcctacccatcccggac
cacctcgaggggctggagctcgacaactga
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integrated database retrieval system
