Trematomus bernacchii (emerald rockcod): 117499020
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Entry
117499020 CDS
T09643
Symbol
zc3h13
Name
(RefSeq) LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 13
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117499020 (zc3h13)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
117499020 (zc3h13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
zf-CCCH_DUS3L
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
117499020
NCBI-ProteinID:
XP_034007138
LinkDB
All DBs
Position
Unknown
AA seq
1860 aa
AA seq
DB search
MSKIRRKVTVENSKTISDSSSTPATSSSSSSSNPAAPSRRPSVFERLGPSTGSNAADSHC
RNWLKTGNCIYGNTCRYTHGTQPRGKGFSFSRSAERPTGDLRERMKNKRQDVDPENLKRD
LDEPTSPPARQRDSSRGRHREKEDIKITKERTPASEEEPTEWETNREDSDIGDYDYELSL
EMKRQKIQRELMKLENLDKRDEIVIKKEETPAKTRATAMPKASPEPLSNKDSPSPRKASG
SPKHKSGTKGSGSGKKEKKALVSSPVSETTRPSKGSHSKKKGPRTPSPPPPVPLDLPVVG
KKHKGKHKNKEKSEEKQKEAKDQGRDAEKHKEKKEKRRDRSDSSHKAKRSVTSEERSGSV
SSPSRCTSPPARKKSSSPKASAHKTPVLASPPRRSPSPPRHQRTPTPPRQHSPSSHSGSS
AQRHSPSPRRRRSSSPTYHRSAAAPASASSPQSSRRSRSPLASHDASSPPRRSDRSSPSQ
RHSRGRERSRGERERSPPAQERRPERRDESRSKREKEGLRDDRDFDSEQVSSRDAREDRE
TREARERRETRDRGRETTRDSRDNRDNTRDAKDPRESRTETRPSRESPERRERERERDRE
KEKEKEKEKEKEKEKEKEREREKEKERERSEAHRKEEPAQDDRSYGRGHGREEGGRAEAR
TENRPDRAERNGRGRGRGTETSEKGSNRNSRGSQLESSHDNWDSRSSAVRERSAERSTDR
SATERSSERGSDRDRYEGERRGEPARDPSFDRRGGHGERERRDIRERAGDQRAASPNRHQ
GRAEEPEREERREERRTDRPEDRRDDRTRDRDREREREREREREREREKEKERERDRERE
KEREKEAERERAREREREREREKEREREREREREEREKEREDRERERRDRERDREQRERE
RQREWEERERGREERRDRRDDPRDERPVRDTRDDRKASRKRPRVESSPSPRASPKRTARD
LSPAESDGYNSAEEKSERPIGRGQAKLHPPPLLPNPVCPHPSDSAEKNRLPSQVVRPQDP
LLRTPPVAAAVSEEKPSHWKEEERRGAGEKRETRSSRHEELEPRVERSRGDRRGDPLADP
PSDSRSRGRDLREPTLPPPPPPPPPPPPQALVSVDTVHEEGKKKTKSQRKGLKKGRKEDD
IASGNIVAAAGDRFNPEPPAGVLAEVPPPVHSPRKGAKKKALERKRKRSREGESDVSEED
SSAPQPHNKKKRGPRTPPPSMRPDIRAAAGNKEPSPLSKMDNFSDWSDEEVTDRGVPLET
KAPPAPVEPLKKAAGPRGVRERGNPPPIAPLLPQDQTPTLLPTPQPLMSQTLLRKLPPEQ
TRSSSMGSNQSRTSSRRLRSPSNEPANREDPQGPRARRGRLQGANSRDRERERERERPVV
NEPPGVERKSRIDQLRRGEPSRSTSSDRQDSHSHSSRRSSPDSERPARSRSRAGSYDSRE
RERDREPFERERDRKDLRPQQQPPPQQQQQQQPLLLQQPLQQQPRDWEPELRDWPGRGRE
PLLMRPGREPLLRERDIRDRDRLLPEGLIQQHERERDRDRGDRERERMMMDLPPHGDPRA
PGRGDLRGDLRGDMRGDLRGDMIRPERSEYETLLPKEAFNPPETEKPNSHHLIGEQREPE
KTDSIDEDDDGKEDDGQSVASVGEEYEPISDDELDEILADSQKKEDQQDEEKITGPLDVI
DVDWSSLMPKQKAEPRAAGAALLRFTPGAVLLRAGISKRLAGPELLEQVREVCRAELDDP
KDADKLFEHDLGALNMAALNRRVERAGLLRNLGPCCKALCARRDFAIRRQLLKNDKGLTK
QYPTTPVVDTELLQMSMRLFRRTMAGVAPEKPDGGSAPAAEGPPAEGGKLITPKTEVCVS
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagatcaggcggaaggtaacagtggagaattcaaaaaccatatctgatagcagc
agcacccccgccaccagcagcagcagcagcagcagcaaccccgccgccccctcccgccgg
cccagtgtgtttgagagacttggccccagcactgggagtaatgctgctgatagtcactgt
agaaattggctgaagaccggtaattgcatttacggcaacacttgtcgctacacacatgga
actcagccacgaggcaaaggatttagctttagtcggtcagccgagagacccacaggtgat
ctgcgggagaggatgaagaataaaagacaggatgttgacccagaaaacttgaagcgagac
ctagacgagcccacatcccccccagcgagacagagagactcctccagaggcagacacagg
gaaaaggaggatatcaaaatcacaaaagagcgcaccccagcaagtgaagaagagcccaca
gagtgggaaaccaatcgtgaagactcagatatcggtgactacgactacgagttatcccta
gagatgaagcgtcagaagatccaacgtgagctgatgaagttggagaacttggacaagagg
gatgagattgtcatcaagaaggaggagacccccgccaaaacaagagccaccgccatgccg
aaggcttctccagagccgttaagcaataaggattcaccttcacccaggaaggcaagtgga
tccccaaaacacaaaagtggaaccaaaggctcaggctctgggaagaaagagaagaaggca
ctggtgtcctcgcctgtttcagaaactaccaggccttcgaaagggagccacagtaagaag
aaagggccccgtacccccagtcctcctcccccagtgcctctggaccttcccgtggttggg
aagaaacacaaaggcaagcacaagaacaaggagaagtcagaggagaagcagaaggaggca
aaagatcaggggcgagatgcagaaaaacacaaggagaagaaggagaaacgcagggaccga
tcggacagttcccacaaggccaagcggtcagtgacgtcagaggagcgatctggcagcgtg
tcgtccccctcgaggtgcacctcccccccagccaggaagaaatccagctctcctaaagca
tcggcccataaaacccccgtgctggcctcccctcctcgcaggtctccctctcctccacgg
caccagcgcacccccactcccccccgacagcactccccctcctcccactctggttcctcc
gcccagcgacactctccgtctcctcgtcgccgccgctcctcctccccgacctatcatcgc
agcgcagcagctccggcttctgcctcctcccctcagagctcccggcgttcccgatccccc
ctcgcctcccacgacgcctcctctcccccccgccgctccgacagatccagccccagccag
cggcactcgagaggccgagagaggagccggggggaacgagagaggagcccccccgcccag
gagcgcagacctgagcgcagagacgaaagccgcagcaagcgtgagaaggaaggcctccgc
gacgaccgggactttgactccgagcaggtctcgtcacgggacgcccgggaagaccgagag
acgagagaggctcgtgagagaagggagactcgcgacagaggaagggaaacaacccgagac
tctcgtgacaaccgagacaataccagagacgctaaggaccccagagagagcaggacggag
acccgccccagccgagagtctccagagcgccgggaacgggaacgagagagggaccgcgag
aaggagaaggagaaggagaaagagaaagagaaggagaaagagaaggagaaggagagagag
cgggaaaaggaaaaggaaagggaaaggagtgaggcccacaggaaggaggagccggctcag
gatgacaggagctatgggagagggcatggacgggaggagggagggagagcggaggcgagg
acggagaacaggccggacagagcggagaggaacgggcgagggagaggacgtgggactgag
acatctgagaaaggctcaaacagaaactcccgaggatcccaactggaaagcagccatgac
aactgggactcccggagcagcgcggtgagggaacggagcgccgagagaagcacggaccgc
agcgctacagaaaggagctcggagaggggttcggacagagatcgatacgaaggcgagcgc
agaggagagccggcccgcgacccctcgttcgaccggaggggaggacacggagagagggag
cgcagagacatccgggagagagccggagatcaaagagcagcctccccaaaccgacaccag
gggagagccgaagagcccgagagggaggagaggagggaggagcgtcggactgatcgacca
gaagaccggcgagacgacaggactcgcgaccgggacagagagagagagagagaaagggag
agggaacgggagagagagagggagaaggagaaggagcgagagcgagaccgcgagagggaa
aaggagcgagagaaggaggcggagagggagagggcccgggagagagagagggaacgggaa
cgggagaaggagagagaacgagagagggaacgggagcgcgaggagagggagaaagagagg
gaggaccgggagagggagaggagggacagggagagagatagggagcagcgggagagggag
aggcagcgggaatgggaggagcgagagagagggagagaggaaagacgggacaggagggat
gaccccagggacgagcgacctgttcgagacacccgggacgacaggaaggccagtcgtaag
aggcccagagtggagagcagcccgagcccccgtgcctcgccgaagcgcacagctcgtgac
ctcagtcctgcagagagcgacggctacaacagtgcggaagagaagagtgagcgcccaatt
ggccgggggcaggccaagctccaccctccgcccctcctcccgaacccagtgtgtccgcat
ccatctgacagtgcagagaagaatcgtctgccgagccaggtggtgcggccccaggatcct
ttgctgcgcactccaccggtggctgctgctgtatctgaggagaaaccgagtcactggaag
gaggaggagcgcagaggggccggggagaaaagggaaactcgcagcagccgccacgaggaa
ctagagcctcgcgtggaacggagcagaggcgacagacgaggagatcccctcgctgacccc
ccgtctgactctcgaagcagaggcagagacctgcgagagcccactctccccccccctccc
cctccccctcctcctccgcctcctcaagccctagtcagcgtcgacactgtccacgaggag
ggcaaaaagaagaccaagtcgcaaagaaagggattgaagaagggtcgcaaagaagatgac
atcgctagtggcaacatcgtggctgctgcaggagatcgattcaaccccgagcccccggcc
ggcgtcttggcagaagttcctccacccgtacactcgcccaggaaaggggccaagaagaag
gcgctcgagcgaaagaggaaacgctcgcgagaaggagaatctgatgtgtctgaggaagat
tcatcggcccctcagcctcacaataagaagaagagaggtccccggacacccccgccttca
atgaggcctgatattcgtgctgctgcaggaaacaaagagccgtctcctctgtccaaaatg
gacaatttcagtgattggtcagatgaggaggtaacagaccgaggagtccccctggagaca
aaagctccaccggctcctgttgagcctctcaagaaagctgcaggtcccagaggggtcagg
gagcggggcaaccctcctcccatcgctcctctattgccccaagaccagactcccaccctg
ctgccgactccgcagcccctcatgtcccagaccctgctccgcaaactccccccggagcag
acgcgcagcagcagcatggggagcaaccagagccgcacctcgtccagacgcctgagatcc
ccctccaacgagccggccaatcgagaagacccgcaaggtccaagagctcgtcggggccgg
ctgcagggcgccaactctcgggacagagagcgtgaaagagagagagagaggccggtggtg
aacgagcctccgggggtcgagaggaagtctcgtatcgaccagctgaggagaggagagccc
agccgcagcacctcctcagaccggcaggactcccacagccacagctccagacgcagctct
ccagactccgagcggccggccaggtccaggtcccgcgccggctcctacgacagccgggag
cgcgaaagggaccgcgagccgtttgagcgggagcgagacaggaaggatctgcggccgcag
cagcagccgccgccgcagcagcagcagcagcagcagcccctgctcctccagcagccgttg
cagcagcagcccagagactgggagcccgagctgagagactggcccggcaggggacgggag
cccctactgatgagacccggccgggaacccctcctgagggagcgggacatcagggaccgg
gatcgcttactccctgaaggactcattcagcagcatgagcgagagagggatcgggacaga
ggagatcgagagagggagaggatgatgatggacctgccgccgcatggggacccccgggcg
ccgggacgaggggatcttagaggagatcttagaggagatatgaggggggacctgcggggg
gacatgatcagaccggagaggagcgagtatgagactctgctgccgaaagaagccttcaac
cctccagagacggagaaacccaacagccaccatctgatcggagagcagcgtgagccggag
aagacggacagcatcgatgaagacgatgatgggaaagaagacgatggccagtcagttgca
tctgtgggcgaggagtatgaacccatcagtgatgatgagctagatgagatccttgctgac
agccagaaaaaagaagatcagcaggacgaggagaaaattacaggtcctctggatgtcatt
gatgtggactggtccagcctgatgcccaagcagaaggcagagccccgggcagcaggggcc
gcgctgctccggttcaccccaggggccgtgctccttcgggcgggcatctcgaagagactt
gcagggcctgagctcctggagcaggtcagggaggtgtgcagagctgagctggacgaccct
aaagatgccgacaagctgtttgagcatgacctgggggctttaaacatggcggccctgaac
aggcgggtggagagggccggattactgaggaacctcgggccctgctgcaaggccctgtgc
gcccgcagagacttcgccatccgccgccagctgttaaaaaatgacaagggtcttacgaag
cagtaccccactacaccagtggtagacaccgagctgctgcagatgagcatgcgtctcttc
agaaggaccatggcgggcgtggcccccgagaagcctgacggggggtcggcccctgcagcc
gagggccctccagctgagggtggtaagctcatcacacctaagactgaggtgtgtgtgtcc
tga
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