Trematomus bernacchii (emerald rockcod): 117499067
Help
Entry
117499067 CDS
T09643
Name
(RefSeq) low-density lipoprotein receptor-related protein 6-like
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04150
mTOR signaling pathway
tben04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
117499067
04150 mTOR signaling pathway
117499067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117499067
Membrane trafficking [BR:
tben04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
117499067
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
SGL
DUF5050
EGF_LRP2
EGF
cEGF
Motif
Other DBs
NCBI-GeneID:
117499067
NCBI-ProteinID:
XP_034007240
LinkDB
All DBs
Position
Unknown
AA seq
1399 aa
AA seq
DB search
MGVVLRSLLLCSFCILIRGVPLLLYANRRDLRLVDAAHEKHNSSVVVGGLEDAAAVDYIY
DQGLIYWSDVSEEAIKRTVFNQSGASVVQTVVPGLVSPDGIACDWRGRKLYWTDSETNRI
EVSELDGKLRKVLFWQELDQPRAIALDPERGYMYWTDWGEIPKIERAGMDGTNRSMIIDK
EIHWPNGLTLDYAQQKLYWADAKHNFIHRANMDGSNREVVVKGELPHPFALTLYEETLFW
TDWNTHSIHSCRKQTGEDQRVVHSDIFSPMDIHVFSAKRQSILVSSPCSVQNGGCSHLCL
LSPVEPFHQCACPTGVQLLPGNKTCRDGATHMLLLARRTDLRRISLDTPDFTDIILQVED
IRHAIAIDYDPVEGYVYWTDDDVKALRRSLLDGSDSQFVVTSQVNHPDGIAVDWIARNLY
WTDTGTDRIEVTRLNGSMRKILISEDLDEPRAIVLDPVAGYMYWTDWGEVPKIERSDLDG
CERLVLVNTSLGWPNGLALDYEERKLYWGDAKTDKIEVMSMDGSGRQVLVEDKLPHIFGF
TLLGDFIYWTDWQRRSIERVNKRTAEREVIIDQLPDLMGLKAVSVHLASGTNACSELNGG
CSHLCLFTPRGVICGCPIGLELVSDMKNCIVPEAFLLFSRHTDIRRISLETNNNNVAIPL
TGVKEASALDFDVTDNRIYWTDITLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKN
LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGYMYWTEWGGKPKIDRAAM
DGTGRLTLVSDVGRANGLTIDYAERRLYWTDLDTTLIESSNMLGEEREVIADDLPHPFGL
TQYQDYIYWTDWSQRSIERANKTSGQNRTVIQGHLDYVMDILVFHSSRQGGWNACAATNG
HCSHLCLAVPISGFVCGCPAHFLLNGDNKTCSAPTSFLLFSQKTAINRMVMDEQQSPDII
LPIHSLRNVRAIDYDPLDKQLYWIDSKQNVIRRATEDGNQSMTVVSSPLQGPGSGSGPGG
SGLQIYDLSIDVFSRFIYWTSEVTNVINVTRTDGSRVGVVLRGEHDKPRAIVVNPERGYM
YFTNLQERSPKIERAALDGTEREVLFFSGLGKPVALAIDNELGKLFWVDSDLRRIESSDL
SGANRIVMADSNILQPVGLTVFGGHLYWIDKQQQMIERIDKNTREGRTKIQARIAYLSDI
HAVHELDMREYSKHPCTWENGGCSHICIVKGDGTTRCSCPVHLVLLQDELSCGEPPTCSP
DQFSCSSGEVDCIPHAWRCDGYPECDDSSDEQNCPVCSEEEFQCDSRQCIQMKLRCNGEK
DCQDGTDERECEVRCPPDQFSCSNGQCVGKHKKCDHNTDCSDNSDEIGCYPTEEPPPPSN
NTIVSIVGVVMSLFVVEEN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtcgtgctgcggagcctgttgttgtgtagtttctgtattctcatacgaggcgtg
ccgctgctgctgtatgcgaaccggcgggacctccgtctggtggacgccgcccacgagaag
cacaactcctcggtggtggtcgggggtctggaggacgccgcggccgtggattatatctac
gaccagggcctcatttactggagcgacgtgagcgaggaggccatcaaacgcaccgtgttc
aaccaatcaggagccagcgtggtgcagacggtggtgccgggactcgtgtcgcccgacggc
atcgcatgcgattggagaggaaggaaactctactggaccgactcggagacgaataggatc
gaagtttctgagctggacgggaagctgaggaaggttttattctggcaggagctggaccaa
ccccgagccatcgctctggaccccgaacgagggtacatgtactggacggattggggtgag
atcccaaagatcgagcgggcggggatggacggtacgaaccgctccatgatcatcgataaa
gagatccattggcccaacggcctgacgctggactacgctcagcagaaactgtactgggcc
gacgccaagcacaacttcatccaccgagccaacatggacggctccaacagggaggtggtg
gtgaaaggggagcttcctcacccgttcgccctcaccctttacgaggagacgctgttctgg
acggactggaacacgcactccatccattcctgcaggaaacagacgggcgaggaccagcgg
gtcgttcactcagacatcttctcccccatggacatccacgtgttcagcgccaagaggcag
agcatactggtgagcagcccgtgctcagtgcagaatggaggctgttcccacctctgcctg
ctctcccctgtggagccgttccatcagtgcgcctgtcccaccggagtgcaactgctgccc
ggcaacaagacctgcagagacggtgcgacccacatgctgcttctcgctcggcgcaccgac
ctgcggcggatctctctcgacacgccggacttcaccgacatcatcctgcaggtggaggac
atccggcacgccatcgccatcgactacgacccggtggagggatacgtttactggacggac
gacgatgtgaaggctcttcgccgctctctgctggacggatccgactctcagttcgtcgtc
acgtcgcaggtgaaccacccggacggcatcgcagtggactggatcgcgaggaacctttac
tggaccgacaccggcaccgaccgcatcgaggtgacgcggctcaacggctccatgaggaag
atactcatctcagaagacctggacgagccccgcgccatcgtgctggaccccgtcgctggg
tacatgtactggacggactggggcgaggtgcctaagatcgagcgttcggacctggacggg
tgtgagcgtctggttctggtcaacacgtcgctcggctggcccaacggactcgctctggac
tacgaggagcgcaaactgtactggggagacgccaagaccgacaagatcgaggtgatgagc
atggacggttcggggcggcaggtgttggtcgaggacaaactccctcacatcttcggcttc
acgctgctcggagacttcatctattggacggactggcagcggcgcagcatcgaacgcgtc
aacaaacgcacggcagagcgagaggtgatcatcgatcagctgccggacctcatggggctg
aaggccgtcagcgtgcacctggcctcaggaaccaacgcctgctctgagttaaacggcggc
tgcagtcacctctgcctcttcactcctcgaggagtgatctgtggatgtcccatcggtctg
gagctggtctccgacatgaagaactgcatcgtccccgaagccttcctgctgttctccaga
cacacggacatccgccgcatctcgctggaaacaaacaacaacaacgtggccatcccgctg
accggcgtcaaggaggcgtccgcgctcgacttcgacgtcaccgacaaccgcatctactgg
accgacatcacgctgaagacgatcagccgggccttcatgaacggctcggctctggagcac
gtggtggagttcgggctggattaccccgaggggatggctgttgattggctggggaagaac
ctctactgggcggacacggggaccaatcgcatcgaagtatccaaactggacgggcagcac
cggcaggttctggtgtggaaagacctggacagcccgcgggcgctggctctggacccggct
gaggggtacatgtactggacggagtggggggggaagcctaagatcgaccgcgcggcgatg
gacgggacggggcgtctcactctggtctcggacgtagggcgagccaacggactcaccatc
gattacgctgagcggcgcctctactggacagacctggacactacactcattgagtcctcc
aacatgctgggtgaggagcgggaggtgatagcagacgacctccctcaccccttcggcctc
acccagtaccaggactacatctactggacggactggagccagcgcagcatcgagcgcgcc
aacaagaccagcgggcagaatcgaaccgtgattcagggccacctggactacgtgatggac
atcctggtgttccactcgtcacggcaggggggctggaacgcctgcgccgccaccaatggg
cactgctctcacctgtgcctcgccgtgccaatcagcggcttcgtctgtggatgccccgcc
cacttcctgctcaacggagacaacaagacctgcagcgcccccacctccttcctgctgttc
agccagaagacggccattaaccgcatggtgatggacgagcagcagagccccgacatcatc
ctgcccatccacagcctgaggaacgtccgcgccatcgactacgacccgctggacaagcag
ctgtactggatcgactccaagcagaacgtcatccggagggccacagaggacgggaaccag
agcatgacggtggtgtccagcccgctgcagggtcctggttctggttctggtcctggtggt
tctggtctgcagatttacgacctgagcatcgacgtgttcagccgcttcatctactggacc
agcgaggtcaccaacgtcatcaacgtcacgaggaccgacggcagccgagtgggcgtcgtt
ctgcgcggagagcacgacaaaccgagagccatcgtggtgaacccagagagagggtacatg
tacttcaccaacctgcaggagcgctccccaaagatcgagcgtgcggcgctggacgggacg
gagcgagaggttctgttcttcagcggcttggggaaaccggtcgctctggccatcgacaac
gagctggggaaactgttctgggtcgactcggacctgcggaggatcgagagcagcgacctc
tccggagcgaaccgcatcgtgatggcggactcgaacatcctgcagccggtggggctgacg
gtgttcggggggcacctctactggatcgacaagcagcagcagatgatcgagcgcattgac
aagaacacccgggagggaagaaccaagatccaggcgcgcatcgcctacctgagcgacatc
cacgccgtgcacgagctcgacatgcgggagtacagtaaacacccgtgcacctgggagaat
ggtggctgctcccacatctgcatcgtgaagggagacgggacgaccaggtgctcgtgtcct
gttcacctggtgctgctgcaggacgagctctcctgtggagagcctcccacctgctcccct
gatcagttctcctgcagctcaggggaagtggactgtattcctcacgcctggcgctgtgat
ggatatccagaatgtgacgacagcagcgacgagcagaactgccccgtgtgctccgaggag
gagttccagtgcgacagcaggcagtgcatccagatgaaactcaggtgcaacggagagaag
gactgccaggacgggaccgacgagagggagtgtgaagtgcgctgcccccccgatcagttc
tcctgctctaacggccagtgcgtcgggaaacacaagaagtgcgaccacaacacggactgc
tccgacaactcggacgagatcggctgctaccccacagaggagcccccccccccctctaat
aacaccatagtgtctatagtaggcgtagtgatgtcgctcttcgtggtggaggagaactga
DBGET
integrated database retrieval system
