Trematomus bernacchii (emerald rockcod): 117499197
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Entry
117499197 CDS
T09643
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117499197 (srrm1)
03015 mRNA surveillance pathway
117499197 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117499197 (srrm1)
03041 Spliceosome [BR:
tben03041
]
117499197 (srrm1)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117499197 (srrm1)
Spliceosome [BR:
tben03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
117499197 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
117499197
NCBI-ProteinID:
XP_034007495
LinkDB
All DBs
Position
Unknown
AA seq
864 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTETL
GFEDDVVIELIFNLLEEKNPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLATLKKVDDDKKEKDIRDRAQSKSPRSLHRPMSRRKSRSP
SPRRRSPVKRERKRSASRSPRRKPSPVVSSSPPPPLMQLPAKPVEQLVEPNALEGALPEP
AIQETPSTCDTVVEVVKPDPVTEVKESSPEKPLKKEERPKSRDREKDSRRDRPHHRSRSH
SRNRRRRSRSRSYSPRRRPSPRRRMSPRRRSPPRRGPPGNRNRHRRSPVRRRRSRSASSS
GSSSSNSRSPKKAMKRISNSPPRKGVHHPEKAISPAGKDRRSPSPRARRGRGSASPARPS
GLKQKQRGRNDSPSDNAKPRPSEGSDSEEDKNDKEATADSVQQRRQYRRQNRQTSSDSGS
SSSENEGPKRPTAGPGAKNGDVRRRRSRTPSPRRRHRDASPRKRRSPSPPRRRRSPSPPR
RRRSPSPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPLPPQKRKMSSSPPKRSSPGAK
RRPSRSPKRRNSPPQRRRMSPSSSPPRHRRSPMLPSARLSRDPRSPVAAAGRLSPSPATR
GRPVRGSTSPQGRFENSSASPSNPRRQQSPTHSGKPIRRVSRTPEPRNNKRPSPSPQPMR
RAASRSVSPQPAALKRPVPASASPSPSRSASGSPPPAKKASSGSGSQSPSKNSDVDGSGK
KKKKKKEKKHKKEKKHKKHKKHKKEKSGSAVTGDAHENHGAEDGESRKESDSEVEDSLAG
LEKHLREKALRSMRKAQLSPSQMS
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggtacaagtgcggagcaagacaaccgtttcagcaacaag
cagaagaaactgctgaagcagctgaagtttgcagaatgtctggacaagaaggtggacatg
accaaagtgaacctggaagtcatcaaaccttggataactcagcgagtgacagaaactctg
ggattcgaggatgatgtcgtcatagagttaatatttaacctgcttgaggagaagaatcca
gatagcaagatgatgcagatcaacctgacaggctttctgaatgggaagaacgcccgggag
ttcatgagggacctgtggcccctgctgctgagtgctcaggagaacattgctggcatcccc
tctgctttcctggaacagaagaaggaggaaattaaacagagacagattgaacaagagaag
ctggctactctgaagaaagttgatgatgataagaaggaaaaggacatcagagacagggct
cagtcaaaaagcccaagaagtttgcatcgtcctatgtctaggaggaaatcaaggtcaccg
tcaccacggcgaaggtcgccagtgaagcgtgaaaggaaacgcagtgcctctcgctcgccg
agacgcaaacccagtccagtcgtcagcagctccccccctccacccctgatgcagctgcca
gccaaacctgtggagcagcttgtggagccgaatgcattagaaggagccctgccagagccg
gccatccaagaaactccttccacatgtgacacagttgtggaggtggtgaaaccagaccca
gttactgaagtcaaagaatcttcgccagagaagcctctcaagaaagaggaaaggcccaag
tcccgggacagggagaaggacagcaggagggacagacctcaccaccgctctcgttctcat
tcccgcaaccgcaggcgacgctcccgctctagatcctactctcctcgtagaagaccaagt
cccaggaggaggatgtctcctcgtcgtaggagcccccccaggcgtggcccccctggcaac
agaaacagacatagacggtccccagtccgcaggaggcgctcacgctctgcttcatcttct
ggcagcagctcctccaactctcgctctcctaaaaaagcaatgaagagaatatccaactcc
ccacccagaaagggggtccatcatcctgaaaaagccatcagccccgccgggaaggacagg
cggtctccatctcctcgtgccagaagaggccgaggctctgcgtcaccagccaggccgtct
ggtttaaagcaaaaacaaaggggaaggaatgattctccgtctgataatgccaagcccaga
ccttctgaaggctctgactcagaggaggataaaaatgacaaagaggcaacagcagattcg
gtgcagcagcgacgtcagtatcgcaggcagaaccgacagacatcttcagattcaggatct
tcctcctctgaaaacgaggggcccaagaggccaacagccgggccgggagccaaaaacggg
gatgtgaggaggagacgcagccgaacaccgtcaccacggaggagacacagagatgcctcc
ccaaggaaaagacgctctccatctcctccacgcagacggcgctccccgtctcccccacga
cgtcgcagatctccttctcctcctagacgaaggtccccttccccgcctccccgtcgtcgt
tctccatcccccagacgatattctccccctatccagcgtcgctacagcccctcacctttg
cccccacagaagaggaagatgtctagctctcccccaaagcgctcttctccaggggccaag
cgacgcccctccaggtcccccaagcgcagaaactcccctcctcaaaggagacgcatgtct
ccttcctcatctccacccagacaccggaggagccccatgttgccttctgctagactaagc
agggacccacgatcccctgtggcagcagctggccgcctctccccgtcccccgcaacccgc
ggtcgacctgttcggggttccaccagtcctcagggacgttttgaaaactccagtgcatct
ccatctaacccgcggaggcagcagtccccgacacacagcggcaaacccatccgccgagtg
tcccgtaccccagagccacgcaacaacaagagaccctctccgagcccccagcccatgagg
agagcagcctccagatctgtttcccctcaaccagcagctctgaaacgtcccgtccctgca
tctgcctccccctcaccctcccgctctgccagtgggtctccaccaccagcaaagaaagcc
agcagtggttccggcagccaatccccaagcaagaattccgatgttgatggcagtggaaag
aagaagaaaaagaagaaggaaaagaaacacaagaaagagaagaaacacaagaagcacaag
aagcataagaaggagaagagtggtagtgctgtgaccggtgatgcacatgaaaaccacggc
gcggaggacggagagtcaagaaaggaatcagatagtgaagtagaggacagcttggccggc
ctggagaagcacctaagagagaaagccctacggtccatgaggaaggcccagctgtctcca
tcccagatgtcctga
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integrated database retrieval system
