Trematomus bernacchii (emerald rockcod): 117499249
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Entry
117499249 CDS
T09643
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
117499249
NCBI-ProteinID:
XP_034007521
LinkDB
All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MAAVPLHTFYVTVFQLCLLHLANGGAYYGPKQPPPQPQPPPLPQYNDGFPQQQFLGNEMP
HLPYGNEGPLLPQYGKDLPPLPLQKGIERPMNAGKGQTFFRGAKGPPPPRPVEGLREGPQ
GIQGPPGPPGPQGPHGLPGQALSGQPGKPGPPGPQGYQGLSKPGMPGLPGKPGGPGLPGP
KGDLGSNGGGGSTGLPGPPGRPGPPGLPGILKPGGQGLPGQLGRLGEPGHKGPPGFPGPS
GPKGDRGYGQPGLPGLKGPSGPPGQPGNTGGPGFGKPGMNGVPGQPGIPGKTGTSGESGL
AGPTGERGQPGPAGLTGIGKPGNDGFRGQPGPPGGKGESGPHGLPGGPGMPGYGKPGFPG
PKGHIGHGGLTGPPGLKGDKGHGGLPGVIGPNGPSGMPGPPGPIGVPGSLGFPGQKGEDG
FAGQKGNPGMKGDIGPQGLPGQSGFSGGEGQPGPRGFQGPIGPKGEAGMRGSPGTPGAAG
LTGPRGAAGQTGGKGYQGQQGIPGLTGPGGPLGPPGMPGPKGETGLPGKPGYPGEGKLGP
SGNIGPQGNTGPSGPTGLTGQPGQPGLPGPPGLPAGSPDIGQVLPVTGPYPGTKQGWKKN
GGDIGGNGVEMPAFTAKLTTPFPPVGSPVIFDKLLHNGNQNYNPQNGVFTCSVPGVYYFA
YHVHCKGGNVWVALTKNNEPVMYTYDEYSKGLLDQASGSAVLPLRQGDTVHIQLPSDQAS
GLYAGQYVHSSFSGFLLYPM
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgtacctctccacactttctatgtcacagtgttccagctgtgcttattacac
ctggccaacggaggggcttattacggacctaagcagccccccccgcagccccagcccccg
cccttgccacagtataacgatgggtttcctcagcagcagtttttggggaacgagatgcca
cacctgccttatggcaatgaagggccattactgcctcagtatggaaaggatcttcctcca
ctgcctttacaaaagggcatagagaggccaatgaatgcaggcaaaggccaaacattcttc
agaggggcgaaaggccctcctccacctcgtcctgttgaaggtctcagagagggaccacaa
ggaattcagggccccccaggaccgccaggaccacaaggaccacacgggctaccaggccag
gcattgtccgggcaaccagggaagcctgggccgcctggtcctcaaggataccaaggactc
agtaaacctggcatgccaggattgccaggaaaacctggagggcctggattaccaggacct
aaaggtgaccttggttctaatggtggtggaggatcaactggacttcctgggcctcccggg
cgcccaggtccccctggacttccagggattttgaaaccaggaggtcagggactgccaggc
cagcttggtcgtctaggggagcctggccataaaggtccacctgggtttcctggtccttca
ggtcccaagggagacagagggtacggtcaacctggtttaccaggtttgaaaggaccgagc
ggaccaccaggtcaacctggcaatacgggcggccccgggtttggaaaacctggcatgaat
ggtgtccctggacaaccaggaataccaggaaaaactggtacttctggagagtcaggactg
gcggggcctactggtgaaagaggccaaccgggaccagcaggcttgacaggaattggaaaa
ccaggaaatgatggtttcagagggcagccagggccccctggagggaaaggggaatcgggc
cctcacggtttaccagggggtccaggcatgccaggttatggtaaaccagggtttccagga
cctaagggtcacattggacatggtggtcttactggacctccgggcctaaaaggagacaaa
ggtcacggaggtcttccaggggtcatcggtcctaatggtcctagcggaatgcccgggcca
ccgggaccaataggggttcctggtagtctcgggttcccggggcaaaagggagaggatgga
tttgcgggacaaaaaggaaatccaggaatgaagggtgacataggcccccaaggtcttcca
ggacagtcgggtttctcaggcggggaaggacaaccggggccgagaggttttcaaggaccc
attggccctaaaggagaagctggtatgaggggttcacctggtacccctggtgccgcaggg
ttaactggaccgaggggagcggcgggacaaactggagggaaaggctaccagggacaacaa
ggtatcccagggcttacaggaccagggggaccactcggacctcctgggatgccagggcca
aaaggtgaaacgggcctacccggtaaacctggctatcctggtgagggaaaactaggaccc
tctggtaatattggtcctcaaggtaacactgggccaagtggccctactggacttacagga
caacctggacaacccggactccccggtcctccaggactgcctgctggatctcctgacatc
ggacaggtcctccccgtgaccggcccataccctggcacaaaacaaggttggaagaaaaat
ggaggcgacataggtggaaatggcgtcgagatgcctgcgttcacagcaaagctcactact
ccgttcccgcctgtaggatctcctgtcatatttgacaaactcctgcacaatggaaatcag
aactacaacccccaaaatggtgtttttacctgtagcgtaccaggggtctactattttgct
taccacgtccactgcaaagggggtaacgtgtgggtagcactgacgaagaacaatgagcca
gtgatgtacacatacgacgaatactcaaagggcttgctggatcaggcatcggggagcgca
gtactcccgttacgacaaggagacaccgtgcatatacagctgccgtccgaccaggcctca
ggactttacgccggtcaatatgtccactcttcgttttccggattcttattgtaccccatg
taa
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